Wall clock time and date at job start Tue Mar 31 2020 15:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99727 * 2 1 4 4 H 1.48500 * 109.47239 * 239.99837 * 3 2 1 5 5 H 1.48499 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47016 * 119.99805 * 3 2 1 7 7 C 1.38813 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99519 * 195.66891 * 7 2 1 9 9 N 1.36938 * 119.99835 * 15.67569 * 7 2 1 10 10 C 1.44579 * 118.63782 * 206.48816 * 9 7 2 11 11 C 1.54862 * 109.60400 * 270.72568 * 10 9 7 12 12 C 1.47090 * 110.31994 * 288.73900 * 11 10 9 13 13 C 1.52567 * 114.32965 * 62.80102 * 12 11 10 14 14 H 1.08989 * 109.49128 * 34.97283 * 13 12 11 15 15 N 1.46497 * 109.48866 * 155.02458 * 13 12 11 16 16 C 1.34785 * 119.99774 * 205.00119 * 15 13 12 17 17 O 1.21634 * 119.99623 * 359.97438 * 16 15 13 18 18 C 1.47161 * 120.00094 * 179.97438 * 16 15 13 19 19 C 1.36044 * 123.46315 * 0.02562 * 18 16 15 20 20 S 1.70447 * 110.82696 * 179.71286 * 19 18 16 21 21 C 1.75499 * 92.45705 * 0.26874 * 20 19 18 22 22 C 1.32844 * 110.58068 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 123.46445 * 180.02562 * 22 21 20 24 24 C 1.50881 * 109.35696 * 274.98611 * 13 12 11 25 25 C 1.47598 * 118.64690 * 26.46723 * 9 7 2 26 26 H 0.97002 * 120.00070 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.44901 * 150.68470 * 10 9 7 28 28 H 1.09006 * 109.42634 * 30.75354 * 10 9 7 29 29 H 1.08999 * 109.32937 * 168.47154 * 11 10 9 30 30 H 1.09000 * 109.32477 * 48.99310 * 11 10 9 31 31 H 1.09007 * 108.51114 * 301.54302 * 12 11 10 32 32 H 1.08997 * 108.51465 * 184.06045 * 12 11 10 33 33 H 0.96996 * 120.00857 * 24.99659 * 15 13 12 34 34 H 1.07997 * 124.58990 * 359.97438 * 19 18 16 35 35 H 1.08006 * 124.70985 * 179.97438 * 21 20 19 36 36 H 1.09004 * 109.36900 * 212.07557 * 24 13 12 37 37 H 1.09006 * 109.36854 * 331.69246 * 24 13 12 38 38 H 1.08998 * 108.94716 * 258.55530 * 25 9 7 39 39 H 1.09004 * 108.94758 * 17.27246 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0601 -1.2196 0.2521 9 7 1.3637 -2.3658 -0.3215 10 6 1.8694 -3.6099 0.2141 11 6 2.9231 -4.2023 -0.7539 12 6 2.2711 -4.7060 -1.9724 13 6 1.5628 -3.6341 -2.7952 14 1 2.1223 -2.7007 -2.7352 15 7 1.4803 -4.0657 -4.1928 16 6 1.3763 -3.1496 -5.1759 17 8 1.3505 -1.9646 -4.9027 18 6 1.2941 -3.5830 -6.5799 19 6 1.3161 -4.8877 -6.9647 20 16 1.1942 -5.0218 -8.6595 21 6 1.1189 -3.2808 -8.8675 22 6 1.1862 -2.6667 -7.6915 23 17 1.1401 -0.9409 -7.5088 24 6 0.1716 -3.4235 -2.2505 25 6 0.1792 -2.2983 -1.1995 26 1 -0.4850 0.8401 -0.0004 27 1 1.0469 -4.3156 0.3313 28 1 2.3308 -3.4260 1.1844 29 1 3.4468 -5.0208 -0.2602 30 1 3.6414 -3.4279 -1.0229 31 1 1.5400 -5.4622 -1.6864 32 1 3.0269 -5.1799 -2.5987 33 1 1.5006 -5.0106 -4.4107 34 1 1.3955 -5.7253 -6.2876 35 1 1.0310 -2.7784 -9.8195 36 1 -0.4987 -3.1517 -3.0661 37 1 -0.1795 -4.3465 -1.7890 38 1 -0.7195 -2.3784 -0.5881 39 1 0.1733 -1.3365 -1.7125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052467507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:36 Heat of formation + Delta-G solvation = 16.497482 kcal Electronic energy + Delta-G solvation = -23900.753152 eV Core-core repulsion = 20382.695171 eV Total energy + Delta-G solvation = -3518.057982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -39.93191 -38.07384 -37.02324 -35.91830 -34.61878 -32.85110 -31.16015 -30.59028 -29.53151 -26.08430 -25.16947 -23.83102 -23.21288 -21.39942 -20.21559 -19.33472 -19.11192 -18.29247 -17.13123 -16.53728 -15.73550 -15.10166 -15.00678 -14.68589 -14.24030 -13.82507 -13.67491 -13.45796 -13.33481 -13.15653 -13.03474 -12.78010 -12.38295 -11.87276 -11.74883 -11.59386 -11.49090 -11.02466 -10.85573 -10.76957 -10.68535 -10.35787 -10.17403 -10.02830 -9.88385 -9.64493 -9.52834 -9.45828 -9.25213 -8.74119 -8.56528 -8.25931 -6.56784 -5.66878 -3.10701 0.42478 0.98555 1.38864 1.64789 2.47431 3.35999 3.47885 3.48497 3.53920 3.57005 4.33966 4.61488 4.88387 4.99130 5.11269 5.19700 5.33052 5.52759 5.54304 5.59805 5.66528 5.78177 6.04578 6.15625 6.24026 6.33606 6.48271 6.53037 6.64020 6.72853 6.82392 6.89608 7.05028 7.11448 7.53542 7.77932 7.82643 7.94404 8.51792 8.58860 9.35157 10.02248 10.46362 11.40638 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003920 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.407066 B = 7141.774727 C = 8525.223374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.105 4.105 13 C 0.156 3.844 14 H 0.105 0.895 15 N -0.722 5.722 16 C 0.563 3.437 17 O -0.501 6.501 18 C -0.137 4.137 19 C -0.211 4.211 20 S 0.216 5.784 21 C -0.238 4.238 22 C -0.008 4.008 23 Cl -0.012 7.012 24 C -0.147 4.147 25 C 0.183 3.817 26 H 0.253 0.747 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.388 0.612 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.025 0.975 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -14.495 -17.775 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.728 3.272 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.029 3.971 11 C -0.187 4.187 12 C -0.144 4.144 13 C 0.053 3.947 14 H 0.123 0.877 15 N -0.373 5.373 16 C 0.346 3.654 17 O -0.375 6.375 18 C -0.155 4.155 19 C -0.349 4.349 20 S 0.480 5.520 21 C -0.374 4.374 22 C -0.046 4.046 23 Cl 0.017 6.983 24 C -0.187 4.187 25 C 0.058 3.942 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.221 0.779 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.765 -14.521 -18.523 23.602 hybrid contribution 0.440 1.631 0.816 1.876 sum 2.205 -12.890 -17.707 22.012 Atomic orbital electron populations 1.70043 1.05238 1.25485 1.53922 1.24989 0.95212 0.98281 1.00507 0.86433 0.79025 0.83662 0.78030 1.20930 1.21693 1.21022 1.19119 0.92314 0.85078 1.42546 0.91844 1.43662 1.32392 1.01877 1.53280 1.20687 0.93857 0.88412 0.94182 1.21449 1.00375 0.99960 0.96873 1.20562 0.99089 0.97441 0.97264 1.20549 0.97774 0.99370 0.77007 0.87733 1.46169 1.75074 1.08722 1.07339 1.17421 0.77998 0.86386 0.83595 1.90941 1.47495 1.15874 1.83238 1.20212 1.08745 0.91492 0.95061 1.25601 1.06871 1.00231 1.02221 1.83023 1.68730 1.01849 0.98403 1.25399 1.12479 0.98000 1.01547 1.20735 1.03815 0.87955 0.92127 1.98425 1.96358 1.05754 1.97811 1.22454 0.95423 1.00843 0.99947 1.20944 0.88480 0.95701 0.89104 0.93690 0.95033 0.93599 0.93050 0.91909 0.92846 0.93500 0.77911 0.80586 0.80466 0.92578 0.93658 0.95692 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 11.01 55.49 0.61 -26.45 16 2 C 0.01 0.26 4.87 -17.43 -0.08 0.17 16 3 Si 0.90 22.85 29.58 -169.99 -5.03 17.82 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.26 -7.29 9.44 -15.06 -0.14 -7.43 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.79 2.27 -172.07 -0.39 -15.18 16 10 C 0.16 3.23 5.65 -4.09 -0.02 3.21 16 11 C -0.15 -2.50 5.74 -28.59 -0.16 -2.67 16 12 C -0.11 -1.62 4.69 -29.79 -0.14 -1.76 16 13 C 0.16 2.80 2.06 -69.22 -0.14 2.66 16 14 H 0.10 2.39 6.92 -51.94 -0.36 2.03 16 15 N -0.72 -10.65 4.90 -56.23 -0.28 -10.92 16 16 C 0.56 9.48 7.61 -12.63 -0.10 9.38 16 17 O -0.50 -10.84 14.72 5.25 0.08 -10.76 16 18 C -0.14 -1.81 5.98 -104.61 -0.63 -2.43 16 19 C -0.21 -1.91 10.38 29.94 0.31 -1.60 16 20 S 0.22 1.52 23.02 -107.50 -2.47 -0.96 16 21 C -0.24 -2.22 11.00 28.88 0.32 -1.90 16 22 C -0.01 -0.10 6.49 -38.99 -0.25 -0.35 16 23 Cl -0.01 -0.19 27.24 -51.86 -1.41 -1.60 16 24 C -0.15 -2.88 5.38 -27.29 -0.15 -3.03 16 25 C 0.18 4.54 4.67 -2.93 -0.01 4.53 16 26 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.75 7.36 -51.92 -0.38 0.37 16 32 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 33 H 0.39 4.19 7.10 -40.82 -0.29 3.90 16 34 H 0.18 1.09 7.01 -52.49 -0.37 0.72 16 35 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.06 1.12 7.85 -51.93 -0.41 0.71 16 37 H 0.04 0.80 7.32 -51.93 -0.38 0.42 16 38 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 39 H 0.08 2.26 6.33 -51.93 -0.33 1.93 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -33.10 340.58 -9.97 -43.07 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.00 Total: 1.07 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.20 Total: -1.22 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.06 Total: -52.55 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.47 Total: -0.96 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.41 Total: -1.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.10 -9.97 -43.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052467507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.565 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds