Wall clock time and date at job start Tue Mar 31 2020 15:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99727 * 2 1 4 4 H 1.48500 * 109.47239 * 239.99837 * 3 2 1 5 5 H 1.48499 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47016 * 119.99805 * 3 2 1 7 7 C 1.38813 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99519 * 195.66891 * 7 2 1 9 9 N 1.36938 * 119.99835 * 15.67569 * 7 2 1 10 10 C 1.44579 * 118.63782 * 206.48816 * 9 7 2 11 11 C 1.54862 * 109.60400 * 270.72568 * 10 9 7 12 12 C 1.47090 * 110.31994 * 288.73900 * 11 10 9 13 13 C 1.52567 * 114.32965 * 62.80102 * 12 11 10 14 14 H 1.08989 * 109.49128 * 34.97283 * 13 12 11 15 15 N 1.46497 * 109.48866 * 155.02458 * 13 12 11 16 16 C 1.34785 * 119.99774 * 205.00119 * 15 13 12 17 17 O 1.21634 * 119.99623 * 359.97438 * 16 15 13 18 18 C 1.47161 * 120.00094 * 179.97438 * 16 15 13 19 19 C 1.36044 * 123.46315 * 0.02562 * 18 16 15 20 20 S 1.70447 * 110.82696 * 179.71286 * 19 18 16 21 21 C 1.75499 * 92.45705 * 0.26874 * 20 19 18 22 22 C 1.32844 * 110.58068 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 123.46445 * 180.02562 * 22 21 20 24 24 C 1.50881 * 109.35696 * 274.98611 * 13 12 11 25 25 C 1.47598 * 118.64690 * 26.46723 * 9 7 2 26 26 H 0.97002 * 120.00070 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.44901 * 150.68470 * 10 9 7 28 28 H 1.09006 * 109.42634 * 30.75354 * 10 9 7 29 29 H 1.08999 * 109.32937 * 168.47154 * 11 10 9 30 30 H 1.09000 * 109.32477 * 48.99310 * 11 10 9 31 31 H 1.09007 * 108.51114 * 301.54302 * 12 11 10 32 32 H 1.08997 * 108.51465 * 184.06045 * 12 11 10 33 33 H 0.96996 * 120.00857 * 24.99659 * 15 13 12 34 34 H 1.07997 * 124.58990 * 359.97438 * 19 18 16 35 35 H 1.08006 * 124.70985 * 179.97438 * 21 20 19 36 36 H 1.09004 * 109.36900 * 212.07557 * 24 13 12 37 37 H 1.09006 * 109.36854 * 331.69246 * 24 13 12 38 38 H 1.08998 * 108.94716 * 258.55530 * 25 9 7 39 39 H 1.09004 * 108.94758 * 17.27246 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0601 -1.2196 0.2521 9 7 1.3637 -2.3658 -0.3215 10 6 1.8694 -3.6099 0.2141 11 6 2.9231 -4.2023 -0.7539 12 6 2.2711 -4.7060 -1.9724 13 6 1.5628 -3.6341 -2.7952 14 1 2.1223 -2.7007 -2.7352 15 7 1.4803 -4.0657 -4.1928 16 6 1.3763 -3.1496 -5.1759 17 8 1.3505 -1.9646 -4.9027 18 6 1.2941 -3.5830 -6.5799 19 6 1.3161 -4.8877 -6.9647 20 16 1.1942 -5.0218 -8.6595 21 6 1.1189 -3.2808 -8.8675 22 6 1.1862 -2.6667 -7.6915 23 17 1.1401 -0.9409 -7.5088 24 6 0.1716 -3.4235 -2.2505 25 6 0.1792 -2.2983 -1.1995 26 1 -0.4850 0.8401 -0.0004 27 1 1.0469 -4.3156 0.3313 28 1 2.3308 -3.4260 1.1844 29 1 3.4468 -5.0208 -0.2602 30 1 3.6414 -3.4279 -1.0229 31 1 1.5400 -5.4622 -1.6864 32 1 3.0269 -5.1799 -2.5987 33 1 1.5006 -5.0106 -4.4107 34 1 1.3955 -5.7253 -6.2876 35 1 1.0310 -2.7784 -9.8195 36 1 -0.4987 -3.1517 -3.0661 37 1 -0.1795 -4.3465 -1.7890 38 1 -0.7195 -2.3784 -0.5881 39 1 0.1733 -1.3365 -1.7125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052467507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:33 Heat of formation + Delta-G solvation = -5.494688 kcal Electronic energy + Delta-G solvation = -23901.706804 eV Core-core repulsion = 20382.695171 eV Total energy + Delta-G solvation = -3519.011634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.18376 -39.42898 -38.20514 -36.89374 -36.28609 -34.49209 -32.74123 -32.36566 -30.57952 -27.84669 -26.32992 -25.33627 -24.99477 -22.52402 -21.64164 -21.01317 -20.25174 -19.17315 -18.54702 -18.08196 -17.25840 -16.68677 -16.21395 -16.07589 -15.82672 -15.55305 -14.91998 -14.79844 -14.46877 -14.35840 -14.25862 -13.99448 -13.81791 -13.60455 -13.21147 -13.01115 -12.73691 -12.61219 -12.50903 -12.47887 -12.12245 -12.01258 -11.75585 -11.74113 -11.50317 -11.38154 -11.34341 -10.77651 -10.43178 -10.12754 -9.96762 -9.32566 -8.63971 -7.85858 -5.30700 -0.33805 0.27482 0.65872 0.70739 1.38760 1.45188 1.49119 1.62497 2.19304 2.31649 2.49854 3.28972 3.60731 3.69494 3.82261 3.96379 4.10204 4.27655 4.36687 4.41218 4.47919 4.49383 4.70271 4.72602 4.83346 4.89083 4.96146 5.04058 5.18009 5.23489 5.26667 5.37426 5.53109 5.59956 5.65288 5.72045 5.78646 6.41313 6.64348 7.19131 7.35767 7.97689 8.35148 9.18856 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003920 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.407066 B = 7141.774727 C = 8525.223374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.048 4.048 3 Si 0.954 3.046 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.133 4.133 12 C -0.102 4.102 13 C 0.166 3.834 14 H 0.048 0.952 15 N -0.705 5.705 16 C 0.558 3.442 17 O -0.566 6.566 18 C -0.181 4.181 19 C -0.196 4.196 20 S 0.326 5.674 21 C -0.239 4.239 22 C -0.042 4.042 23 Cl -0.053 7.053 24 C -0.130 4.130 25 C 0.196 3.804 26 H 0.246 0.754 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.412 0.588 34 H 0.210 0.790 35 H 0.198 0.802 36 H 0.045 0.955 37 H 0.076 0.924 38 H -0.004 1.004 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -19.206 -19.642 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.783 3.217 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.173 4.173 12 C -0.140 4.140 13 C 0.061 3.939 14 H 0.066 0.934 15 N -0.357 5.357 16 C 0.344 3.656 17 O -0.445 6.445 18 C -0.199 4.199 19 C -0.335 4.335 20 S 0.591 5.409 21 C -0.375 4.375 22 C -0.080 4.080 23 Cl -0.025 7.025 24 C -0.170 4.170 25 C 0.071 3.929 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.250 0.750 34 H 0.227 0.773 35 H 0.215 0.785 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.014 0.986 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.913 -19.325 -20.398 28.249 hybrid contribution 0.102 2.884 1.268 3.152 sum 3.015 -16.441 -19.130 25.404 Atomic orbital electron populations 1.70199 1.06493 1.25410 1.55934 1.25684 0.95951 1.01212 1.01498 0.85534 0.77839 0.80230 0.78102 1.21698 1.22054 1.19213 1.19445 0.92513 0.86480 1.40805 0.91763 1.43831 1.32153 1.02785 1.53837 1.20962 0.95268 0.86906 0.94723 1.21291 0.98754 1.00226 0.97022 1.20512 1.00382 0.96687 0.96406 1.20154 0.95889 0.98513 0.79320 0.93390 1.45836 1.74386 1.09835 1.05648 1.18068 0.76441 0.85711 0.85424 1.90913 1.50506 1.18632 1.84448 1.19862 1.13926 0.93306 0.92798 1.26091 1.03162 0.99308 1.04905 1.82791 1.64896 0.98038 0.95136 1.25834 1.10046 1.00390 1.01222 1.20916 1.07224 0.86252 0.93640 1.98399 1.96780 1.09272 1.98013 1.22231 0.96885 0.99791 0.98105 1.20571 0.87510 0.95396 0.89457 0.94518 0.93230 0.94364 0.89031 0.94656 0.89915 0.90116 0.75015 0.77287 0.78473 0.93623 0.90511 0.98620 0.95574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.40 11.01 21.65 0.24 -59.16 16 2 C -0.05 -2.91 4.87 84.86 0.41 -2.49 16 3 Si 0.95 49.19 29.58 68.60 2.03 51.22 16 4 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 5 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.26 -15.22 9.44 84.03 0.79 -14.43 16 8 H 0.06 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.60 -31.19 2.27 -698.31 -1.59 -32.78 16 10 C 0.15 5.94 5.65 87.37 0.49 6.43 16 11 C -0.13 -4.21 5.74 29.39 0.17 -4.04 16 12 C -0.10 -2.76 4.69 28.61 0.13 -2.62 16 13 C 0.17 5.88 2.06 44.16 0.09 5.97 16 14 H 0.05 2.30 6.92 -2.39 -0.02 2.28 16 15 N -0.70 -19.74 4.90 -450.05 -2.21 -21.95 16 16 C 0.56 19.09 7.61 86.58 0.66 19.75 16 17 O -0.57 -26.34 14.72 -4.14 -0.06 -26.40 16 18 C -0.18 -4.56 5.98 -19.86 -0.12 -4.68 16 19 C -0.20 -2.71 10.38 67.31 0.70 -2.01 16 20 S 0.33 2.92 23.02 -56.49 -1.30 1.62 16 21 C -0.24 -3.84 11.00 66.64 0.73 -3.11 16 22 C -0.04 -1.08 6.49 22.68 0.15 -0.93 16 23 Cl -0.05 -1.72 27.24 -2.72 -0.07 -1.80 16 24 C -0.13 -5.16 5.38 30.24 0.16 -4.99 16 25 C 0.20 10.28 4.67 86.50 0.40 10.69 16 26 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 28 H 0.04 1.57 7.99 -2.38 -0.02 1.55 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.84 7.36 -2.38 -0.02 1.83 16 32 H 0.08 1.72 8.04 -2.39 -0.02 1.70 16 33 H 0.41 7.25 7.10 -92.71 -0.66 6.59 16 34 H 0.21 1.31 7.01 -2.91 -0.02 1.29 16 35 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.05 1.88 7.85 -2.38 -0.02 1.86 16 37 H 0.08 2.55 7.32 -2.38 -0.02 2.54 16 38 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 39 H 0.03 1.62 6.33 -2.38 -0.02 1.60 16 Total: -1.00 -82.42 340.58 2.25 -80.18 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.42 Total: 5.55 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.78 Total: 3.52 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -3.55 Total: -113.89 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.06 Total: -26.40 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.03 Total: 51.22 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.30 Total: 1.62 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.80 kcal Total: -82.42 2.25 -80.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052467507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.682 kcal (2) G-P(sol) polarization free energy of solvation -82.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds