Wall clock time and date at job start Tue Mar 31 2020 15:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47477 * 239.99808 * 3 2 1 5 5 H 1.48507 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47079 * 119.99573 * 3 2 1 7 7 C 1.38806 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99882 * 196.75195 * 7 2 1 9 9 N 1.36935 * 120.00218 * 17.02219 * 7 2 1 10 10 C 1.44577 * 118.64603 * 206.97284 * 9 7 2 11 11 C 1.54864 * 109.59997 * 270.70802 * 10 9 7 12 12 C 1.47091 * 110.32048 * 288.73152 * 11 10 9 13 13 C 1.52567 * 114.32574 * 62.80715 * 12 11 10 14 14 H 1.09003 * 109.48898 * 34.97078 * 13 12 11 15 15 N 1.46503 * 109.49043 * 155.01660 * 13 12 11 16 16 C 1.34770 * 119.99953 * 204.99535 * 15 13 12 17 17 O 1.21702 * 120.00296 * 0.02562 * 16 15 13 18 18 C 1.46577 * 119.99964 * 179.97438 * 16 15 13 19 19 C 1.36677 * 125.45292 * 180.02562 * 18 16 15 20 20 C 1.37529 * 113.28569 * 180.02562 * 19 18 16 21 21 Cl 1.73600 * 122.45783 * 179.97438 * 20 19 18 22 22 C 1.33871 * 115.08122 * 0.02562 * 20 19 18 23 23 S 1.70619 * 110.96022 * 359.72379 * 22 20 19 24 24 C 1.50883 * 109.35822 * 274.98114 * 13 12 11 25 25 C 1.47601 * 118.64052 * 26.70840 * 9 7 2 26 26 H 0.97003 * 119.99916 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.44645 * 30.74793 * 10 9 7 28 28 H 1.09003 * 109.44613 * 150.66770 * 10 9 7 29 29 H 1.08993 * 109.32892 * 48.99738 * 11 10 9 30 30 H 1.08999 * 109.32229 * 168.64462 * 11 10 9 31 31 H 1.09007 * 108.50863 * 184.05938 * 12 11 10 32 32 H 1.08994 * 108.51693 * 301.70099 * 12 11 10 33 33 H 0.96997 * 119.99679 * 25.00024 * 15 13 12 34 34 H 1.07995 * 123.35473 * 359.97138 * 19 18 16 35 35 H 1.07999 * 124.52077 * 179.97438 * 22 20 19 36 36 H 1.08992 * 109.36597 * 212.07718 * 24 13 12 37 37 H 1.09004 * 109.36465 * 331.70166 * 24 13 12 38 38 H 1.08998 * 108.95194 * 258.57681 * 25 9 7 39 39 H 1.09003 * 108.94596 * 17.20450 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0559 -1.2218 0.2702 9 7 1.3706 -2.3622 -0.3461 10 6 1.8588 -3.6110 0.1946 11 6 2.9372 -4.1992 -0.7485 12 6 2.3176 -4.6931 -1.9878 13 6 1.6343 -3.6140 -2.8222 14 1 2.1940 -2.6823 -2.7405 15 7 1.5891 -4.0358 -4.2245 16 6 1.5138 -3.1129 -5.2037 17 8 1.4838 -1.9290 -4.9231 18 6 1.4693 -3.5349 -6.6067 19 6 1.3934 -2.6977 -7.6843 20 6 1.3654 -3.3621 -8.8881 21 17 1.2701 -2.5308 -10.4091 22 6 1.4160 -4.6970 -8.8008 23 16 1.5107 -5.1990 -7.1729 24 6 0.2291 -3.4040 -2.3142 25 6 0.2075 -2.2854 -1.2516 26 1 -0.4850 0.8401 -0.0004 27 1 2.2938 -3.4352 1.1784 28 1 1.0319 -4.3155 0.2844 29 1 3.6643 -3.4247 -0.9925 30 1 3.4434 -5.0242 -0.2474 31 1 3.0894 -5.1645 -2.5965 32 1 1.5756 -5.4476 -1.7269 33 1 1.6134 -4.9794 -4.4481 34 1 1.3580 -1.6217 -7.5989 35 1 1.4030 -5.3667 -9.6480 36 1 -0.4179 -3.1252 -3.1458 37 1 -0.1363 -4.3293 -1.8687 38 1 -0.7058 -2.3696 -0.6627 39 1 0.2141 -1.3186 -1.7550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052766222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:38 Heat of formation + Delta-G solvation = 12.357436 kcal Electronic energy + Delta-G solvation = -23530.792985 eV Core-core repulsion = 20012.555478 eV Total energy + Delta-G solvation = -3518.237507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.91575 -38.44782 -37.49722 -36.22380 -34.70138 -32.90717 -31.20335 -30.62231 -29.66243 -26.23371 -25.29780 -23.83831 -23.24510 -21.40400 -20.34224 -19.50052 -19.22512 -18.57804 -16.70231 -16.48900 -15.87909 -15.65961 -15.13680 -14.78081 -14.33764 -13.99611 -13.76394 -13.53762 -13.50853 -13.19415 -13.05855 -12.84539 -12.42253 -11.93141 -11.78967 -11.64617 -11.54600 -11.17987 -11.07108 -10.88182 -10.71226 -10.41669 -10.21738 -10.08904 -9.96352 -9.77491 -9.68383 -9.55894 -9.26981 -8.86938 -8.75147 -8.29604 -6.59896 -5.70481 -3.14211 0.13053 0.90184 1.24201 1.89940 2.20262 3.21908 3.24422 3.45924 3.52034 3.54988 4.48571 4.58878 4.80246 4.86783 5.13303 5.28366 5.32949 5.50033 5.56046 5.62204 5.72939 5.78088 5.99264 6.09424 6.20253 6.24966 6.43864 6.49709 6.57364 6.65165 6.75697 6.86248 6.97313 7.06554 7.46779 7.61733 7.76882 7.90908 8.30626 8.55579 9.31550 9.98707 10.43252 11.37099 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.003297 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.300154 B = 8490.884535 C = 9744.226160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.156 3.844 11 C -0.145 4.145 12 C -0.106 4.106 13 C 0.154 3.846 14 H 0.106 0.894 15 N -0.721 5.721 16 C 0.581 3.419 17 O -0.507 6.507 18 C -0.242 4.242 19 C -0.059 4.059 20 C -0.056 4.056 21 Cl -0.048 7.048 22 C -0.237 4.237 23 S 0.242 5.758 24 C -0.148 4.148 25 C 0.183 3.817 26 H 0.253 0.747 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.388 0.612 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -14.709 -16.890 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.728 3.272 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.145 4.145 13 C 0.052 3.948 14 H 0.124 0.876 15 N -0.372 5.372 16 C 0.365 3.635 17 O -0.383 6.383 18 C -0.363 4.363 19 C -0.091 4.091 20 C -0.096 4.096 21 Cl -0.019 7.019 22 C -0.376 4.376 23 S 0.508 5.492 24 C -0.188 4.188 25 C 0.058 3.942 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.221 0.779 34 H 0.182 0.818 35 H 0.196 0.804 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.394 -15.048 -16.071 22.146 hybrid contribution 0.298 1.785 -1.312 2.236 sum 2.692 -13.263 -17.384 22.030 Atomic orbital electron populations 1.70048 1.05263 1.25564 1.53684 1.24998 0.95197 0.98351 1.00448 0.86440 0.79060 0.83637 0.78063 1.20931 1.21682 1.20984 1.19109 0.92701 0.85233 1.42122 0.91837 1.43666 1.34406 1.01836 1.51300 1.20697 0.93809 0.88343 0.94353 1.21450 1.00596 1.00015 0.96578 1.20579 0.99291 0.97365 0.97218 1.20618 0.98086 0.99605 0.76509 0.87560 1.46214 1.74995 1.08493 1.07461 1.16828 0.77610 0.86297 0.82747 1.90943 1.48453 1.16198 1.82667 1.24782 1.15964 0.97321 0.98254 1.20558 0.97770 1.02313 0.88503 1.19554 1.09832 0.91658 0.88582 1.98375 1.96913 1.78203 1.28450 1.25198 1.09951 0.98465 1.03983 1.83051 1.66344 1.04890 0.94901 1.22512 0.95127 1.01035 1.00112 1.20996 0.88995 0.95627 0.88618 0.93656 0.93535 0.94985 0.91847 0.92931 0.93354 0.92674 0.77877 0.81766 0.80410 0.92547 0.93423 0.95493 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 11.12 55.49 0.62 -26.03 16 2 C 0.01 0.26 4.83 -17.43 -0.08 0.17 16 3 Si 0.90 22.48 29.59 -169.99 -5.03 17.46 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.26 -7.20 9.43 -15.06 -0.14 -7.34 16 8 H 0.06 1.72 7.88 -52.48 -0.41 1.31 16 9 N -0.59 -14.50 2.26 -171.87 -0.39 -14.89 16 10 C 0.16 3.15 5.65 -4.09 -0.02 3.13 16 11 C -0.15 -2.43 5.74 -28.58 -0.16 -2.60 16 12 C -0.11 -1.59 4.69 -29.79 -0.14 -1.73 16 13 C 0.15 2.71 2.06 -69.21 -0.14 2.56 16 14 H 0.11 2.36 6.92 -51.93 -0.36 2.00 16 15 N -0.72 -10.40 4.93 -56.40 -0.28 -10.68 16 16 C 0.58 9.42 7.60 -12.90 -0.10 9.32 16 17 O -0.51 -10.71 16.50 5.19 0.09 -10.63 16 18 C -0.24 -3.03 6.45 -36.79 -0.24 -3.27 16 19 C -0.06 -0.72 9.89 -40.40 -0.40 -1.12 16 20 C -0.06 -0.57 6.25 -41.37 -0.26 -0.83 16 21 Cl -0.05 -0.46 29.10 -51.86 -1.51 -1.97 16 22 C -0.24 -1.95 10.78 29.20 0.31 -1.63 16 23 S 0.24 1.98 22.15 -107.50 -2.38 -0.40 16 24 C -0.15 -2.82 5.39 -27.11 -0.15 -2.97 16 25 C 0.18 4.44 4.71 -2.76 -0.01 4.42 16 26 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 28 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.62 8.04 -51.92 -0.42 0.20 16 32 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 33 H 0.39 4.23 7.71 -40.82 -0.31 3.91 16 34 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 37 H 0.05 0.82 7.31 -51.93 -0.38 0.44 16 38 H 0.03 0.70 8.03 -51.93 -0.42 0.29 16 39 H 0.08 2.15 6.39 -51.93 -0.33 1.82 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -31.67 344.70 -10.31 -41.98 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.08 Total: 1.86 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.53 Total: -1.89 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.05 Total: -51.60 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.38 Total: -0.40 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.67 -10.31 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052766222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.336 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds