Wall clock time and date at job start Tue Mar 31 2020 15:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.46961 * 239.99753 * 3 2 1 5 5 H 1.48504 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47438 * 119.99461 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 160.43155 * 7 2 1 9 9 N 1.36937 * 120.00177 * 340.43834 * 7 2 1 10 10 C 1.50174 * 120.53457 * 336.70635 * 9 7 2 11 11 C 1.46234 * 107.58984 * 109.60537 * 10 9 7 12 12 C 1.52525 * 114.27645 * 58.37170 * 11 10 9 13 13 C 1.50126 * 105.41806 * 270.59077 * 12 11 10 14 14 H 1.09006 * 109.20482 * 337.39127 * 13 12 11 15 15 N 1.46494 * 109.21343 * 218.03147 * 13 12 11 16 16 C 1.34765 * 120.00168 * 154.99991 * 15 13 12 17 17 O 1.21702 * 120.00305 * 0.02562 * 16 15 13 18 18 C 1.46581 * 120.00149 * 179.97438 * 16 15 13 19 19 C 1.36669 * 125.45411 * 179.97438 * 18 16 15 20 20 C 1.37533 * 113.28769 * 179.97438 * 19 18 16 21 21 Cl 1.73604 * 122.45764 * 180.02562 * 20 19 18 22 22 C 1.33865 * 115.07833 * 0.02562 * 20 19 18 23 23 S 1.70620 * 110.96207 * 359.72285 * 22 20 19 24 24 C 1.54840 * 110.81313 * 97.68352 * 13 12 11 25 25 C 1.43403 * 120.52131 * 156.59708 * 9 7 2 26 26 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.84554 * 350.06008 * 10 9 7 28 28 H 1.08997 * 109.84293 * 229.14622 * 10 9 7 29 29 H 1.08997 * 108.52575 * 179.61747 * 11 10 9 30 30 H 1.09001 * 108.52039 * 297.29040 * 11 10 9 31 31 H 1.09000 * 110.24936 * 29.56948 * 12 11 10 32 32 H 1.09005 * 110.24745 * 151.61913 * 12 11 10 33 33 H 0.97002 * 119.99759 * 334.99871 * 15 13 12 34 34 H 1.08007 * 123.35616 * 0.02916 * 19 18 16 35 35 H 1.08002 * 124.52183 * 180.02562 * 22 20 19 36 36 H 1.08997 * 109.36001 * 81.34430 * 24 13 12 37 37 H 1.09003 * 109.35812 * 201.06466 * 24 13 12 38 38 H 1.09004 * 108.12414 * 149.83118 * 25 9 7 39 39 H 1.09005 * 107.97151 * 33.17584 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2293 -0.3127 9 7 1.3850 -2.3537 0.3981 10 6 0.1857 -2.2982 1.3002 11 6 -0.9814 -2.6841 0.5080 12 6 -0.8834 -4.0714 -0.1181 13 6 -0.2340 -3.8610 -1.4552 14 1 -0.3850 -2.8279 -1.7685 15 7 -0.8499 -4.7572 -2.4367 16 6 -0.8274 -4.4399 -3.7463 17 8 -0.2949 -3.4090 -4.1136 18 6 -1.4432 -5.3369 -4.7285 19 6 -1.4851 -5.1258 -6.0782 20 6 -2.1252 -6.1301 -6.7660 21 17 -2.3137 -6.1039 -8.4916 22 6 -2.5922 -7.1291 -6.0072 23 16 -2.2398 -6.8603 -4.3596 24 6 1.2848 -4.1531 -1.3812 25 6 1.8637 -3.6317 -0.0423 26 1 -0.4850 0.8400 -0.0004 27 1 0.0558 -1.2853 1.6814 28 1 0.3150 -2.9922 2.1307 29 1 -1.8611 -2.6556 1.1509 30 1 -1.1140 -1.9546 -0.2910 31 1 -0.2676 -4.7227 0.5022 32 1 -1.8780 -4.4991 -0.2450 33 1 -1.2740 -5.5790 -2.1440 34 1 -1.0573 -4.2572 -6.5569 35 1 -3.1174 -7.9928 -6.3877 36 1 1.4499 -5.2281 -1.4520 37 1 1.7893 -3.6548 -2.2091 38 1 1.6383 -4.3638 0.7332 39 1 2.9473 -3.5687 -0.1423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052766223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:41 Heat of formation + Delta-G solvation = 19.762422 kcal Electronic energy + Delta-G solvation = -23567.575004 eV Core-core repulsion = 20049.658601 eV Total energy + Delta-G solvation = -3517.916403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.81603 -38.41040 -37.52333 -36.20455 -34.65900 -32.37113 -31.57845 -30.54199 -29.40525 -26.30357 -25.29214 -23.98216 -23.02726 -21.27091 -20.25705 -19.55395 -19.05609 -18.49593 -16.76152 -16.46700 -15.71738 -15.47858 -15.13576 -14.74677 -14.27846 -13.93660 -13.73709 -13.57980 -13.47104 -13.17924 -13.04298 -12.46961 -12.24243 -11.87462 -11.68833 -11.61321 -11.46048 -11.23200 -11.15044 -10.76489 -10.63609 -10.39734 -10.27223 -10.07434 -9.78555 -9.65094 -9.49736 -9.35131 -9.23038 -8.80158 -8.62633 -8.35717 -6.68651 -5.75066 -3.13849 0.16936 0.93574 1.27988 1.93287 2.23057 3.28778 3.35405 3.44344 3.49588 3.51137 4.52245 4.56156 4.85461 4.90685 5.33998 5.36793 5.41081 5.54118 5.60008 5.74502 5.80782 5.84939 6.00029 6.25135 6.27198 6.39274 6.46401 6.68226 6.82741 6.88689 6.93142 7.00765 7.09505 7.21370 7.59806 7.71794 7.78533 7.98486 8.38470 8.46923 9.23224 9.90596 10.42565 11.32739 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.003008 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.350806 B = 9305.777827 C =10138.690659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.122 4.122 13 C 0.156 3.844 14 H 0.106 0.894 15 N -0.721 5.721 16 C 0.580 3.420 17 O -0.512 6.512 18 C -0.241 4.241 19 C -0.061 4.061 20 C -0.055 4.055 21 Cl -0.049 7.049 22 C -0.239 4.239 23 S 0.243 5.757 24 C -0.152 4.152 25 C 0.162 3.838 26 H 0.253 0.747 27 H 0.091 0.909 28 H 0.006 0.994 29 H 0.031 0.969 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.388 0.612 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 -17.283 -8.082 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.160 4.160 13 C 0.054 3.946 14 H 0.124 0.876 15 N -0.371 5.371 16 C 0.364 3.636 17 O -0.388 6.388 18 C -0.362 4.362 19 C -0.093 4.093 20 C -0.096 4.096 21 Cl -0.020 7.020 22 C -0.377 4.377 23 S 0.509 5.491 24 C -0.194 4.194 25 C 0.032 3.968 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.221 0.779 34 H 0.182 0.818 35 H 0.196 0.804 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.690 -17.152 -7.120 20.100 hybrid contribution 0.283 1.059 -1.780 2.090 sum -7.406 -16.093 -8.899 19.825 Atomic orbital electron populations 1.69939 1.05076 1.25359 1.54134 1.24879 0.95232 0.98210 1.01070 0.86393 0.78986 0.83573 0.77991 1.21023 1.21750 1.21243 1.19163 0.93660 0.85312 1.39846 0.91523 1.44272 1.33703 1.00915 1.52024 1.20165 0.85225 1.00605 0.89894 1.20931 0.98543 0.94889 1.02481 1.21380 0.98747 0.99970 0.95894 1.21378 0.92234 0.94754 0.86260 0.87624 1.46429 1.58810 1.25524 1.06326 1.16869 0.79809 0.84945 0.81998 1.90914 1.44073 1.24516 1.79332 1.24835 1.11420 1.01794 0.98132 1.20543 0.97772 0.99416 0.91606 1.19552 1.05834 0.97355 0.86867 1.98372 1.96496 1.98474 1.08701 1.25193 1.08806 1.04688 0.99040 1.83069 1.49201 1.14113 1.02731 1.23328 0.95050 0.98612 1.02441 1.20356 0.96442 0.88233 0.91755 0.93702 0.89101 0.97553 0.95058 0.87870 0.91707 0.92796 0.77917 0.81837 0.80440 0.93604 0.92359 0.95293 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 9.43 55.49 0.52 -24.42 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 21.84 29.60 -169.99 -5.03 16.81 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.78 9.62 -15.06 -0.14 -6.92 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 9 N -0.59 -14.18 2.61 -175.10 -0.46 -14.64 16 10 C 0.16 3.72 5.24 -5.20 -0.03 3.69 16 11 C -0.13 -2.66 5.03 -30.19 -0.15 -2.81 16 12 C -0.12 -2.07 5.34 -28.40 -0.15 -2.22 16 13 C 0.16 2.92 2.22 -68.39 -0.15 2.76 16 14 H 0.11 2.55 6.26 -51.93 -0.33 2.23 16 15 N -0.72 -11.04 4.97 -55.60 -0.28 -11.32 16 16 C 0.58 9.77 7.73 -12.90 -0.10 9.67 16 17 O -0.51 -11.08 16.51 5.19 0.09 -11.00 16 18 C -0.24 -3.13 6.45 -36.79 -0.24 -3.37 16 19 C -0.06 -0.76 9.89 -40.41 -0.40 -1.16 16 20 C -0.06 -0.58 6.25 -41.37 -0.26 -0.84 16 21 Cl -0.05 -0.48 29.10 -51.86 -1.51 -1.99 16 22 C -0.24 -2.04 10.77 29.20 0.31 -1.72 16 23 S 0.24 2.10 22.15 -107.50 -2.38 -0.28 16 24 C -0.15 -2.91 5.98 -24.76 -0.15 -3.06 16 25 C 0.16 3.33 5.17 -4.68 -0.02 3.31 16 26 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.09 2.31 6.05 -51.93 -0.31 2.00 16 28 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.10 2.53 5.29 -51.93 -0.27 2.26 16 31 H 0.06 1.04 6.29 -51.93 -0.33 0.72 16 32 H 0.05 0.78 7.85 -51.93 -0.41 0.38 16 33 H 0.39 4.58 7.59 -40.82 -0.31 4.27 16 34 H 0.16 2.13 8.06 -52.48 -0.42 1.70 16 35 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 39 H 0.03 0.72 7.98 -51.93 -0.41 0.30 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -30.10 339.33 -10.31 -40.41 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.81 Total: 3.96 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.57 Total: -2.65 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.21 Total: -50.38 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.38 Total: -0.28 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.10 -10.31 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052766223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.172 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds