Wall clock time and date at job start Tue Mar 31 2020 15:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.46961 * 239.99753 * 3 2 1 5 5 H 1.48504 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47438 * 119.99461 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 160.43155 * 7 2 1 9 9 N 1.36937 * 120.00177 * 340.43834 * 7 2 1 10 10 C 1.50174 * 120.53457 * 336.70635 * 9 7 2 11 11 C 1.46234 * 107.58984 * 109.60537 * 10 9 7 12 12 C 1.52525 * 114.27645 * 58.37170 * 11 10 9 13 13 C 1.50126 * 105.41806 * 270.59077 * 12 11 10 14 14 H 1.09006 * 109.20482 * 337.39127 * 13 12 11 15 15 N 1.46494 * 109.21343 * 218.03147 * 13 12 11 16 16 C 1.34765 * 120.00168 * 154.99991 * 15 13 12 17 17 O 1.21702 * 120.00305 * 0.02562 * 16 15 13 18 18 C 1.46581 * 120.00149 * 179.97438 * 16 15 13 19 19 C 1.36669 * 125.45411 * 179.97438 * 18 16 15 20 20 C 1.37533 * 113.28769 * 179.97438 * 19 18 16 21 21 Cl 1.73604 * 122.45764 * 180.02562 * 20 19 18 22 22 C 1.33865 * 115.07833 * 0.02562 * 20 19 18 23 23 S 1.70620 * 110.96207 * 359.72285 * 22 20 19 24 24 C 1.54840 * 110.81313 * 97.68352 * 13 12 11 25 25 C 1.43403 * 120.52131 * 156.59708 * 9 7 2 26 26 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.84554 * 350.06008 * 10 9 7 28 28 H 1.08997 * 109.84293 * 229.14622 * 10 9 7 29 29 H 1.08997 * 108.52575 * 179.61747 * 11 10 9 30 30 H 1.09001 * 108.52039 * 297.29040 * 11 10 9 31 31 H 1.09000 * 110.24936 * 29.56948 * 12 11 10 32 32 H 1.09005 * 110.24745 * 151.61913 * 12 11 10 33 33 H 0.97002 * 119.99759 * 334.99871 * 15 13 12 34 34 H 1.08007 * 123.35616 * 0.02916 * 19 18 16 35 35 H 1.08002 * 124.52183 * 180.02562 * 22 20 19 36 36 H 1.08997 * 109.36001 * 81.34430 * 24 13 12 37 37 H 1.09003 * 109.35812 * 201.06466 * 24 13 12 38 38 H 1.09004 * 108.12414 * 149.83118 * 25 9 7 39 39 H 1.09005 * 107.97151 * 33.17584 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2293 -0.3127 9 7 1.3850 -2.3537 0.3981 10 6 0.1857 -2.2982 1.3002 11 6 -0.9814 -2.6841 0.5080 12 6 -0.8834 -4.0714 -0.1181 13 6 -0.2340 -3.8610 -1.4552 14 1 -0.3850 -2.8279 -1.7685 15 7 -0.8499 -4.7572 -2.4367 16 6 -0.8274 -4.4399 -3.7463 17 8 -0.2949 -3.4090 -4.1136 18 6 -1.4432 -5.3369 -4.7285 19 6 -1.4851 -5.1258 -6.0782 20 6 -2.1252 -6.1301 -6.7660 21 17 -2.3137 -6.1039 -8.4916 22 6 -2.5922 -7.1291 -6.0072 23 16 -2.2398 -6.8603 -4.3596 24 6 1.2848 -4.1531 -1.3812 25 6 1.8637 -3.6317 -0.0423 26 1 -0.4850 0.8400 -0.0004 27 1 0.0558 -1.2853 1.6814 28 1 0.3150 -2.9922 2.1307 29 1 -1.8611 -2.6556 1.1509 30 1 -1.1140 -1.9546 -0.2910 31 1 -0.2676 -4.7227 0.5022 32 1 -1.8780 -4.4991 -0.2450 33 1 -1.2740 -5.5790 -2.1440 34 1 -1.0573 -4.2572 -6.5569 35 1 -3.1174 -7.9928 -6.3877 36 1 1.4499 -5.2281 -1.4520 37 1 1.7893 -3.6548 -2.2091 38 1 1.6383 -4.3638 0.7332 39 1 2.9473 -3.5687 -0.1423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052766223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:41 Heat of formation + Delta-G solvation = 1.230346 kcal Electronic energy + Delta-G solvation = -23568.378616 eV Core-core repulsion = 20049.658601 eV Total energy + Delta-G solvation = -3518.720014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16159 -39.58108 -38.83008 -37.03444 -36.28208 -34.09506 -33.30671 -32.04692 -30.58558 -28.01978 -26.41212 -25.66677 -24.58132 -22.54819 -21.80636 -20.91529 -20.34151 -19.60841 -18.58657 -17.47424 -17.00304 -16.95305 -16.60104 -16.28798 -15.72755 -15.60410 -15.15229 -15.00222 -14.64741 -14.27400 -14.10968 -13.95258 -13.80206 -13.49264 -13.21215 -13.13411 -12.66073 -12.48328 -12.43433 -12.38556 -12.16052 -11.96295 -11.91038 -11.76524 -11.58055 -11.18751 -11.11603 -11.11008 -10.43219 -10.21099 -9.94272 -9.50197 -8.62511 -7.81818 -5.21471 -0.71641 0.18618 0.42725 1.02920 1.45014 1.47136 1.47448 1.54180 2.05009 2.11269 2.55137 3.31211 3.63902 3.64849 3.91047 4.03001 4.08711 4.13192 4.32932 4.49592 4.52272 4.64765 4.74073 4.81726 4.87731 4.89637 4.90840 5.06484 5.19674 5.28333 5.31120 5.40396 5.52260 5.63755 5.68573 5.79963 6.22563 6.44018 6.47282 7.14863 7.21194 7.95100 8.42160 9.22046 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.003008 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.350806 B = 9305.777827 C =10138.690659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.043 4.043 3 Si 0.954 3.046 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.057 0.943 9 N -0.602 5.602 10 C 0.166 3.834 11 C -0.124 4.124 12 C -0.107 4.107 13 C 0.168 3.832 14 H 0.043 0.957 15 N -0.706 5.706 16 C 0.578 3.422 17 O -0.577 6.577 18 C -0.286 4.286 19 C -0.064 4.064 20 C -0.077 4.077 21 Cl -0.047 7.047 22 C -0.218 4.218 23 S 0.335 5.665 24 C -0.142 4.142 25 C 0.156 3.844 26 H 0.246 0.754 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.410 0.590 34 H 0.143 0.857 35 H 0.213 0.787 36 H 0.083 0.917 37 H 0.017 0.983 38 H 0.062 0.938 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -21.185 -7.437 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.075 0.925 9 N -0.324 5.324 10 C 0.043 3.957 11 C -0.163 4.163 12 C -0.145 4.145 13 C 0.064 3.936 14 H 0.062 0.938 15 N -0.357 5.357 16 C 0.365 3.635 17 O -0.458 6.458 18 C -0.407 4.407 19 C -0.097 4.097 20 C -0.117 4.117 21 Cl -0.019 7.019 22 C -0.357 4.357 23 S 0.602 5.398 24 C -0.184 4.184 25 C 0.028 3.972 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.161 0.839 35 H 0.230 0.770 36 H 0.101 0.899 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.072 -21.121 -6.449 23.874 hybrid contribution 0.673 2.157 -2.014 3.027 sum -8.399 -18.963 -8.463 22.401 Atomic orbital electron populations 1.70121 1.05808 1.25112 1.54968 1.25501 0.96031 1.00646 1.01709 0.85550 0.77796 0.80467 0.77828 1.21431 1.22025 1.20402 1.19341 0.93543 0.86929 1.39509 0.92526 1.44442 1.34124 1.01272 1.52596 1.20134 0.85509 0.99404 0.90654 1.20741 0.98350 0.96079 1.01122 1.21298 1.00918 0.98104 0.94169 1.20912 0.92471 0.92323 0.87866 0.93842 1.46122 1.58364 1.25755 1.05477 1.17385 0.78800 0.84576 0.82736 1.90878 1.46977 1.27546 1.80384 1.24447 1.14336 1.04554 0.97329 1.20536 0.97778 0.99506 0.91929 1.19435 1.07278 0.97750 0.87260 1.98370 1.96548 1.98500 1.08451 1.25715 1.06336 1.04449 0.99151 1.82689 1.46061 1.09401 1.01668 1.23199 0.94946 1.00224 1.00034 1.20500 0.95996 0.87523 0.93210 0.94506 0.92648 0.94699 0.93339 0.92382 0.89378 0.89401 0.75317 0.83930 0.76996 0.89872 0.96405 0.91934 0.95510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.05 9.43 21.65 0.20 -52.84 16 2 C -0.04 -2.42 4.91 84.86 0.42 -2.00 16 3 Si 0.95 46.51 29.60 68.60 2.03 48.54 16 4 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.26 -14.73 9.62 84.03 0.81 -13.92 16 8 H 0.06 3.21 7.88 -2.91 -0.02 3.18 16 9 N -0.60 -29.43 2.61 -707.88 -1.85 -31.27 16 10 C 0.17 7.47 5.24 83.58 0.44 7.91 16 11 C -0.12 -5.03 5.03 28.35 0.14 -4.89 16 12 C -0.11 -3.36 5.34 29.51 0.16 -3.20 16 13 C 0.17 6.27 2.22 44.69 0.10 6.37 16 14 H 0.04 2.22 6.26 -2.38 -0.01 2.21 16 15 N -0.71 -20.85 4.97 -448.04 -2.23 -23.07 16 16 C 0.58 19.91 7.73 86.42 0.67 20.58 16 17 O -0.58 -26.91 16.51 -4.36 -0.07 -26.98 16 18 C -0.29 -7.21 6.45 24.08 0.16 -7.05 16 19 C -0.06 -1.60 9.89 21.74 0.21 -1.38 16 20 C -0.08 -1.49 6.25 21.11 0.13 -1.36 16 21 Cl -0.05 -0.87 29.10 -2.72 -0.08 -0.95 16 22 C -0.22 -2.85 10.77 66.82 0.72 -2.13 16 23 S 0.33 4.46 22.15 -56.49 -1.25 3.21 16 24 C -0.14 -5.40 5.98 31.87 0.19 -5.21 16 25 C 0.16 6.31 5.17 87.60 0.45 6.76 16 26 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.06 2.88 6.05 -2.39 -0.01 2.87 16 28 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.06 2.96 5.29 -2.39 -0.01 2.94 16 31 H 0.09 2.42 6.29 -2.39 -0.02 2.40 16 32 H 0.09 2.18 7.85 -2.38 -0.02 2.16 16 33 H 0.41 8.29 7.59 -92.71 -0.70 7.58 16 34 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 2.11 6.89 -2.39 -0.02 2.09 16 39 H 0.03 1.11 7.98 -2.38 -0.02 1.09 16 Total: -1.00 -72.49 339.33 1.74 -70.75 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.39 Total: 12.17 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 4.60 Total: 0.46 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.87 Total: -107.19 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.25 Total: 3.21 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -72.49 1.74 -70.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052766223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.976 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds