Wall clock time and date at job start Tue Mar 31 2020 15:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47220 * 275.52786 * 3 2 1 5 5 H 1.48499 * 109.47331 * 35.53157 * 3 2 1 6 6 H 1.48500 * 109.47065 * 155.53088 * 3 2 1 7 7 C 1.38809 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00156 * 336.28363 * 7 2 1 9 9 N 1.36941 * 119.99970 * 156.28065 * 7 2 1 10 10 C 1.47604 * 118.64033 * 139.20520 * 9 7 2 11 11 C 1.53947 * 112.14394 * 137.89005 * 10 9 7 12 12 C 1.50880 * 110.09399 * 319.43681 * 11 10 9 13 13 C 1.52568 * 109.36383 * 91.88419 * 12 11 10 14 14 H 1.08995 * 108.38880 * 36.15056 * 13 12 11 15 15 N 1.46497 * 108.51506 * 153.73324 * 13 12 11 16 16 C 1.34771 * 119.99910 * 209.76352 * 15 13 12 17 17 O 1.21640 * 120.00483 * 0.02562 * 16 15 13 18 18 C 1.47183 * 119.99928 * 180.02562 * 16 15 13 19 19 C 1.35971 * 123.45992 * 0.02562 * 18 16 15 20 20 S 1.70437 * 110.84963 * 179.73760 * 19 18 16 21 21 C 1.75506 * 92.45613 * 0.23370 * 20 19 18 22 22 Cl 1.73597 * 124.71937 * 179.97438 * 21 20 19 23 23 C 1.32893 * 110.56002 * 359.97438 * 21 20 19 24 24 C 1.47095 * 114.32188 * 274.98870 * 13 12 11 25 25 C 1.44570 * 118.64539 * 319.22670 * 9 7 2 26 26 H 0.96999 * 119.99647 * 359.97438 * 1 2 3 27 27 H 1.09002 * 108.94844 * 258.57407 * 10 9 7 28 28 H 1.08995 * 108.95161 * 17.29367 * 10 9 7 29 29 H 1.09003 * 109.36549 * 79.62016 * 11 10 9 30 30 H 1.08998 * 109.36970 * 199.36543 * 11 10 9 31 31 H 1.09001 * 109.49040 * 331.91648 * 12 11 10 32 32 H 1.09003 * 109.49104 * 211.84960 * 12 11 10 33 33 H 0.97005 * 119.99811 * 29.76962 * 15 13 12 34 34 H 1.08006 * 124.56921 * 0.02562 * 19 18 16 35 35 H 1.07999 * 123.47009 * 180.02562 * 23 21 20 36 36 H 1.08999 * 109.32612 * 183.05990 * 24 13 12 37 37 H 1.08993 * 109.33101 * 302.71238 * 24 13 12 38 38 H 1.08997 * 109.45599 * 150.66751 * 25 9 7 39 39 H 1.08997 * 109.43073 * 30.72536 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3809 2.1139 -1.3936 5 1 1.5110 2.6161 0.8136 6 1 3.6013 1.4092 0.5799 7 6 2.0103 -1.2021 0.0005 8 1 1.5387 -2.0978 0.3771 9 7 3.2929 -1.2524 -0.4765 10 6 4.2863 -2.0677 0.2495 11 6 5.1877 -2.8707 -0.7058 12 6 4.3693 -3.4297 -1.8435 13 6 4.3841 -2.4450 -3.0088 14 1 5.3682 -1.9784 -3.0522 15 7 4.1697 -3.1912 -4.2511 16 6 4.7032 -2.7454 -5.4056 17 8 5.3633 -1.7237 -5.4161 18 6 4.4873 -3.4948 -6.6538 19 6 3.7622 -4.6430 -6.7230 20 16 3.7139 -5.2345 -8.3207 21 6 4.6993 -3.9118 -8.9205 22 17 5.1801 -3.7088 -10.5761 23 6 5.0261 -3.0873 -7.9308 24 6 3.3682 -1.3850 -2.9193 25 6 3.6183 -0.5044 -1.6701 26 1 -0.4849 0.8401 0.0004 27 1 4.9098 -1.4098 0.8550 28 1 3.7624 -2.7617 0.9067 29 1 5.9634 -2.2175 -1.1055 30 1 5.6524 -3.6917 -0.1598 31 1 3.3427 -3.5845 -1.5113 32 1 4.7950 -4.3802 -2.1651 33 1 3.6435 -4.0061 -4.2427 34 1 3.2781 -5.1138 -5.8801 35 1 5.6294 -2.2021 -8.0678 36 1 3.4151 -0.7639 -3.8138 37 1 2.3796 -1.8381 -2.8461 38 1 4.6669 -0.2086 -1.6387 39 1 2.9914 0.3858 -1.7223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052766769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:50 Heat of formation + Delta-G solvation = 14.192751 kcal Electronic energy + Delta-G solvation = -23386.105686 eV Core-core repulsion = 19867.947764 eV Total energy + Delta-G solvation = -3518.157922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.19405 -38.26386 -37.41693 -36.51321 -34.91313 -32.87547 -31.45005 -31.07177 -29.49949 -26.34672 -25.38299 -24.23442 -23.15259 -21.69270 -20.37416 -19.70797 -19.17595 -18.53949 -17.25371 -16.65046 -16.22890 -15.23642 -15.06713 -14.92679 -14.53221 -14.06704 -14.01623 -13.89589 -13.73284 -13.27434 -13.06179 -12.97225 -12.60589 -12.12666 -11.96713 -11.90409 -11.86413 -11.60994 -11.15136 -10.91151 -10.83172 -10.57292 -10.34239 -10.19553 -10.02073 -9.90394 -9.75886 -9.57057 -9.25766 -8.98058 -8.75700 -8.47114 -6.74603 -6.01791 -3.43790 0.29750 0.65619 1.36258 1.58875 1.79710 3.23655 3.31321 3.34821 3.48633 3.55334 4.44873 4.53729 4.78715 4.90602 5.00293 5.05725 5.28287 5.28734 5.40336 5.43462 5.54593 5.74655 5.80155 5.89403 6.02453 6.15667 6.22658 6.28995 6.41097 6.53375 6.61522 6.72340 6.77735 6.80646 6.86779 7.06832 7.58463 8.10083 8.26346 8.39058 9.05477 9.72619 10.11609 11.13588 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.002760 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.268523 B =10141.355673 C =10457.086391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.040 3.960 3 Si 0.873 3.127 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.275 4.275 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.146 3.854 11 C -0.131 4.131 12 C -0.114 4.114 13 C 0.161 3.839 14 H 0.076 0.924 15 N -0.719 5.719 16 C 0.573 3.427 17 O -0.535 6.535 18 C -0.139 4.139 19 C -0.209 4.209 20 S 0.234 5.766 21 C -0.175 4.175 22 Cl -0.012 7.012 23 C -0.067 4.067 24 C -0.152 4.152 25 C 0.153 3.847 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.395 0.605 34 H 0.179 0.821 35 H 0.163 0.837 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -13.112 -16.648 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.161 4.161 3 Si 0.703 3.297 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.403 4.403 8 H 0.093 0.907 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.170 4.170 12 C -0.152 4.152 13 C 0.059 3.941 14 H 0.094 0.906 15 N -0.369 5.369 16 C 0.358 3.642 17 O -0.413 6.413 18 C -0.157 4.157 19 C -0.347 4.347 20 S 0.498 5.502 21 C -0.317 4.317 22 Cl 0.016 6.984 23 C -0.098 4.098 24 C -0.193 4.193 25 C 0.026 3.974 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.229 0.771 34 H 0.196 0.804 35 H 0.181 0.819 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.206 -13.516 -17.440 23.908 hybrid contribution 0.735 1.889 0.507 2.089 sum 9.941 -11.626 -16.934 22.820 Atomic orbital electron populations 1.69893 1.06088 1.26783 1.51034 1.25518 0.95005 0.97822 0.97724 0.86975 0.80820 0.84771 0.77138 1.21273 1.22880 1.19366 1.18762 0.87352 0.94276 1.39949 0.90740 1.43897 1.08039 1.55546 1.25136 1.21275 0.90735 0.93231 0.92651 1.21755 0.98398 0.99540 0.97356 1.21262 1.02713 0.96615 0.94605 1.20077 1.00448 0.92296 0.81291 0.90583 1.46295 1.53778 1.28606 1.08186 1.17459 0.79653 0.84418 0.82682 1.90807 1.40027 1.24351 1.86067 1.20172 1.03580 0.97033 0.94941 1.25818 1.04591 1.00629 1.03673 1.83149 1.47159 1.22940 0.96953 1.25087 1.10925 1.04432 0.91304 1.98378 1.90312 1.96693 1.12968 1.21183 0.99484 1.00123 0.89003 1.21749 0.99670 0.97909 0.99940 1.20964 0.97496 0.93656 0.85282 0.92730 0.96397 0.92410 0.92608 0.91958 0.89821 0.92710 0.77137 0.80352 0.81939 0.92705 0.90852 0.94584 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.97 55.49 0.78 -26.15 16 2 C 0.04 1.14 5.22 -17.43 -0.09 1.05 16 3 Si 0.87 22.25 25.29 -169.99 -4.30 17.95 16 4 H -0.28 -7.16 6.70 56.52 0.38 -6.78 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.27 -7.39 9.66 -15.06 -0.15 -7.54 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 9 N -0.60 -13.73 1.79 -172.10 -0.31 -14.04 16 10 C 0.15 2.77 6.24 -2.94 -0.02 2.75 16 11 C -0.13 -1.98 5.71 -27.30 -0.16 -2.13 16 12 C -0.11 -1.66 5.00 -28.02 -0.14 -1.80 16 13 C 0.16 2.58 1.96 -70.99 -0.14 2.45 16 14 H 0.08 1.32 6.65 -51.93 -0.35 0.98 16 15 N -0.72 -9.63 4.85 -57.98 -0.28 -9.91 16 16 C 0.57 8.42 7.64 -12.63 -0.10 8.32 16 17 O -0.53 -9.88 16.30 5.24 0.09 -9.79 16 18 C -0.14 -1.61 5.98 -104.63 -0.63 -2.24 16 19 C -0.21 -1.78 10.38 29.92 0.31 -1.47 16 20 S 0.23 1.74 23.02 -107.50 -2.47 -0.73 16 21 C -0.17 -1.66 7.01 28.89 0.20 -1.46 16 22 Cl -0.01 -0.10 29.27 -51.86 -1.52 -1.62 16 23 C -0.07 -0.75 10.04 -38.97 -0.39 -1.14 16 24 C -0.15 -2.92 5.20 -28.58 -0.15 -3.07 16 25 C 0.15 3.35 4.52 -4.09 -0.02 3.33 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 1.09 7.89 -51.93 -0.41 0.68 16 29 H 0.06 0.84 7.31 -51.93 -0.38 0.46 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 32 H 0.05 0.66 8.05 -51.93 -0.42 0.25 16 33 H 0.39 4.10 7.11 -40.82 -0.29 3.81 16 34 H 0.18 1.07 7.01 -52.48 -0.37 0.70 16 35 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.05 1.08 7.95 -51.93 -0.41 0.67 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 39 H 0.06 1.35 3.60 -51.93 -0.19 1.16 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -31.62 339.89 -9.24 -40.87 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.89 Total: 1.26 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.46 Total: -2.95 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.19 Total: -50.10 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.30 Total: 17.95 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.62 -9.24 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052766769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.060 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds