Wall clock time and date at job start Tue Mar 31 2020 15:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47220 * 275.52786 * 3 2 1 5 5 H 1.48499 * 109.47331 * 35.53157 * 3 2 1 6 6 H 1.48500 * 109.47065 * 155.53088 * 3 2 1 7 7 C 1.38809 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00156 * 336.28363 * 7 2 1 9 9 N 1.36941 * 119.99970 * 156.28065 * 7 2 1 10 10 C 1.47604 * 118.64033 * 139.20520 * 9 7 2 11 11 C 1.53947 * 112.14394 * 137.89005 * 10 9 7 12 12 C 1.50880 * 110.09399 * 319.43681 * 11 10 9 13 13 C 1.52568 * 109.36383 * 91.88419 * 12 11 10 14 14 H 1.08995 * 108.38880 * 36.15056 * 13 12 11 15 15 N 1.46497 * 108.51506 * 153.73324 * 13 12 11 16 16 C 1.34771 * 119.99910 * 209.76352 * 15 13 12 17 17 O 1.21640 * 120.00483 * 0.02562 * 16 15 13 18 18 C 1.47183 * 119.99928 * 180.02562 * 16 15 13 19 19 C 1.35971 * 123.45992 * 0.02562 * 18 16 15 20 20 S 1.70437 * 110.84963 * 179.73760 * 19 18 16 21 21 C 1.75506 * 92.45613 * 0.23370 * 20 19 18 22 22 Cl 1.73597 * 124.71937 * 179.97438 * 21 20 19 23 23 C 1.32893 * 110.56002 * 359.97438 * 21 20 19 24 24 C 1.47095 * 114.32188 * 274.98870 * 13 12 11 25 25 C 1.44570 * 118.64539 * 319.22670 * 9 7 2 26 26 H 0.96999 * 119.99647 * 359.97438 * 1 2 3 27 27 H 1.09002 * 108.94844 * 258.57407 * 10 9 7 28 28 H 1.08995 * 108.95161 * 17.29367 * 10 9 7 29 29 H 1.09003 * 109.36549 * 79.62016 * 11 10 9 30 30 H 1.08998 * 109.36970 * 199.36543 * 11 10 9 31 31 H 1.09001 * 109.49040 * 331.91648 * 12 11 10 32 32 H 1.09003 * 109.49104 * 211.84960 * 12 11 10 33 33 H 0.97005 * 119.99811 * 29.76962 * 15 13 12 34 34 H 1.08006 * 124.56921 * 0.02562 * 19 18 16 35 35 H 1.07999 * 123.47009 * 180.02562 * 23 21 20 36 36 H 1.08999 * 109.32612 * 183.05990 * 24 13 12 37 37 H 1.08993 * 109.33101 * 302.71238 * 24 13 12 38 38 H 1.08997 * 109.45599 * 150.66751 * 25 9 7 39 39 H 1.08997 * 109.43073 * 30.72536 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3809 2.1139 -1.3936 5 1 1.5110 2.6161 0.8136 6 1 3.6013 1.4092 0.5799 7 6 2.0103 -1.2021 0.0005 8 1 1.5387 -2.0978 0.3771 9 7 3.2929 -1.2524 -0.4765 10 6 4.2863 -2.0677 0.2495 11 6 5.1877 -2.8707 -0.7058 12 6 4.3693 -3.4297 -1.8435 13 6 4.3841 -2.4450 -3.0088 14 1 5.3682 -1.9784 -3.0522 15 7 4.1697 -3.1912 -4.2511 16 6 4.7032 -2.7454 -5.4056 17 8 5.3633 -1.7237 -5.4161 18 6 4.4873 -3.4948 -6.6538 19 6 3.7622 -4.6430 -6.7230 20 16 3.7139 -5.2345 -8.3207 21 6 4.6993 -3.9118 -8.9205 22 17 5.1801 -3.7088 -10.5761 23 6 5.0261 -3.0873 -7.9308 24 6 3.3682 -1.3850 -2.9193 25 6 3.6183 -0.5044 -1.6701 26 1 -0.4849 0.8401 0.0004 27 1 4.9098 -1.4098 0.8550 28 1 3.7624 -2.7617 0.9067 29 1 5.9634 -2.2175 -1.1055 30 1 5.6524 -3.6917 -0.1598 31 1 3.3427 -3.5845 -1.5113 32 1 4.7950 -4.3802 -2.1651 33 1 3.6435 -4.0061 -4.2427 34 1 3.2781 -5.1138 -5.8801 35 1 5.6294 -2.2021 -8.0678 36 1 3.4151 -0.7639 -3.8138 37 1 2.3796 -1.8381 -2.8461 38 1 4.6669 -0.2086 -1.6387 39 1 2.9914 0.3858 -1.7223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052766769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:50 Heat of formation + Delta-G solvation = -5.668074 kcal Electronic energy + Delta-G solvation = -23386.966916 eV Core-core repulsion = 19867.947764 eV Total energy + Delta-G solvation = -3519.019152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35167 -39.55681 -38.32207 -37.35397 -36.41714 -34.47442 -33.11737 -32.60879 -30.44180 -27.97181 -26.48956 -25.58780 -24.87572 -22.75102 -21.70911 -21.12083 -20.27838 -19.37303 -18.64024 -18.15691 -17.69162 -16.80647 -16.16398 -16.12104 -15.98341 -15.58885 -15.12061 -14.94787 -14.76075 -14.62234 -14.49846 -14.26758 -13.84292 -13.78619 -13.61400 -13.15519 -12.73252 -12.68026 -12.64088 -12.32090 -12.27753 -11.99773 -11.83508 -11.81264 -11.58804 -11.45536 -11.40163 -10.99103 -10.62609 -10.17237 -9.96395 -9.50188 -8.66407 -8.21047 -5.57884 -0.44366 -0.02032 0.64881 0.70753 1.08581 1.30105 1.38949 1.49680 2.16464 2.27569 2.41922 3.04680 3.40721 3.69600 3.80200 3.89735 4.07564 4.14791 4.25069 4.34204 4.36777 4.50144 4.58092 4.64976 4.71075 4.84680 4.90475 4.94227 4.97629 5.09160 5.16078 5.28680 5.32096 5.41457 5.52003 5.55222 5.98743 6.21225 6.53762 7.07056 7.19511 7.68895 8.07186 8.98353 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.002760 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.268523 B =10141.355673 C =10457.086391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.012 4.012 3 Si 0.929 3.071 4 H -0.284 1.284 5 H -0.306 1.306 6 H -0.262 1.262 7 C -0.254 4.254 8 H 0.047 0.953 9 N -0.610 5.610 10 C 0.140 3.860 11 C -0.122 4.122 12 C -0.105 4.105 13 C 0.167 3.833 14 H 0.067 0.933 15 N -0.708 5.708 16 C 0.573 3.427 17 O -0.582 6.582 18 C -0.171 4.171 19 C -0.193 4.193 20 S 0.309 5.691 21 C -0.187 4.187 22 Cl -0.009 7.009 23 C -0.084 4.084 24 C -0.136 4.136 25 C 0.148 3.852 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.411 0.589 34 H 0.208 0.792 35 H 0.148 0.852 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.825 -15.554 -17.604 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.209 4.209 3 Si 0.758 3.242 4 H -0.211 1.211 5 H -0.235 1.235 6 H -0.186 1.186 7 C -0.384 4.384 8 H 0.065 0.935 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.063 3.937 14 H 0.085 0.915 15 N -0.359 5.359 16 C 0.359 3.641 17 O -0.464 6.464 18 C -0.189 4.189 19 C -0.332 4.332 20 S 0.573 5.427 21 C -0.330 4.330 22 Cl 0.020 6.980 23 C -0.115 4.115 24 C -0.177 4.177 25 C 0.021 3.979 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.224 0.776 35 H 0.166 0.834 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 10.574 -16.001 -18.409 26.585 hybrid contribution 0.291 2.495 0.728 2.615 sum 10.865 -13.506 -17.682 24.761 Atomic orbital electron populations 1.69995 1.07460 1.27232 1.53952 1.26033 0.95476 1.00611 0.98794 0.86069 0.79728 0.81443 0.76944 1.21125 1.23485 1.18594 1.18695 0.88906 0.92988 1.37825 0.93510 1.43992 1.07471 1.56139 1.25762 1.21460 0.90390 0.93078 0.93479 1.21701 0.97517 1.00095 0.96813 1.21194 1.01732 0.97697 0.93693 1.19822 0.98495 0.92196 0.83143 0.91456 1.46062 1.53799 1.28846 1.07155 1.17900 0.78606 0.83901 0.83645 1.90776 1.42231 1.26538 1.86810 1.19835 1.06724 0.98697 0.93638 1.26226 1.02268 0.99067 1.05682 1.82992 1.44528 1.20260 0.94873 1.25269 1.11213 1.05235 0.91293 1.98379 1.90371 1.96795 1.12465 1.21109 1.00317 1.00453 0.89654 1.21546 0.99652 0.98354 0.98146 1.20963 0.97701 0.93166 0.86030 0.92951 0.96174 0.92671 0.92191 0.88488 0.91901 0.89030 0.75144 0.77554 0.83414 0.93797 0.92945 0.92967 0.95412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.22 13.97 21.65 0.30 -57.92 16 2 C -0.01 -0.70 5.22 84.86 0.44 -0.26 16 3 Si 0.93 46.91 25.29 68.60 1.73 48.65 16 4 H -0.28 -14.11 6.70 99.48 0.67 -13.45 16 5 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.25 -13.89 9.66 84.03 0.81 -13.08 16 8 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 9 N -0.61 -27.53 1.79 -698.39 -1.25 -28.79 16 10 C 0.14 5.05 6.24 86.49 0.54 5.59 16 11 C -0.12 -3.28 5.71 30.22 0.17 -3.11 16 12 C -0.11 -2.77 5.00 29.76 0.15 -2.62 16 13 C 0.17 5.10 1.96 43.01 0.08 5.19 16 14 H 0.07 2.24 6.65 -2.39 -0.02 2.23 16 15 N -0.71 -17.72 4.85 -455.58 -2.21 -19.93 16 16 C 0.57 16.41 7.64 86.59 0.66 17.07 16 17 O -0.58 -21.82 16.30 -4.16 -0.07 -21.89 16 18 C -0.17 -3.73 5.98 -19.87 -0.12 -3.85 16 19 C -0.19 -2.68 10.38 67.29 0.70 -1.98 16 20 S 0.31 3.55 23.02 -56.49 -1.30 2.25 16 21 C -0.19 -3.25 7.01 66.64 0.47 -2.78 16 22 Cl -0.01 -0.14 29.27 -2.72 -0.08 -0.22 16 23 C -0.08 -1.84 10.04 22.68 0.23 -1.61 16 24 C -0.14 -5.24 5.20 29.40 0.15 -5.09 16 25 C 0.15 6.45 4.52 87.38 0.39 6.84 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 2.00 7.89 -2.39 -0.02 1.99 16 29 H 0.06 1.60 7.31 -2.39 -0.02 1.59 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.97 7.48 -2.39 -0.02 1.95 16 32 H 0.09 1.80 8.05 -2.39 -0.02 1.78 16 33 H 0.41 7.35 7.11 -92.70 -0.66 6.70 16 34 H 0.21 1.55 7.01 -2.91 -0.02 1.53 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.04 1.77 7.95 -2.39 -0.02 1.75 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.09 8.06 -2.39 -0.02 2.07 16 39 H 0.03 1.36 3.60 -2.39 -0.01 1.35 16 Total: -1.00 -71.36 339.89 2.20 -69.16 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.39 Total: 8.38 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 4.68 Total: 0.30 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.16 Total: -106.64 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.07 Total: -21.89 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.73 Total: 48.65 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.30 Total: 2.25 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -71.36 2.20 -69.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052766769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.493 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds