Wall clock time and date at job start Tue Mar 31 2020 15:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.46961 * 239.99753 * 3 2 1 5 5 H 1.48504 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47438 * 119.99461 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 160.43155 * 7 2 1 9 9 N 1.36937 * 120.00177 * 340.43834 * 7 2 1 10 10 C 1.50174 * 120.53457 * 336.70635 * 9 7 2 11 11 C 1.46234 * 107.58984 * 109.60537 * 10 9 7 12 12 C 1.52525 * 114.27645 * 58.37170 * 11 10 9 13 13 C 1.50126 * 105.41806 * 270.59077 * 12 11 10 14 14 H 1.09006 * 109.20482 * 337.39127 * 13 12 11 15 15 N 1.46494 * 109.21343 * 218.03147 * 13 12 11 16 16 C 1.34765 * 120.00168 * 154.99991 * 15 13 12 17 17 O 1.21714 * 120.00266 * 359.97438 * 16 15 13 18 18 C 1.46472 * 120.00253 * 180.02562 * 16 15 13 19 19 C 1.36689 * 125.45150 * 180.02562 * 18 16 15 20 20 C 1.37405 * 113.31721 * 179.97438 * 19 18 16 21 21 C 1.34015 * 115.06919 * 0.02562 * 20 19 18 22 22 Cl 1.73606 * 124.52756 * 179.97438 * 21 20 19 23 23 S 1.70614 * 110.93959 * 359.72076 * 21 20 19 24 24 C 1.54840 * 110.81313 * 97.68352 * 13 12 11 25 25 C 1.43403 * 120.52131 * 156.59708 * 9 7 2 26 26 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.84554 * 350.06008 * 10 9 7 28 28 H 1.08997 * 109.84293 * 229.14622 * 10 9 7 29 29 H 1.08997 * 108.52575 * 179.61747 * 11 10 9 30 30 H 1.09001 * 108.52039 * 297.29040 * 11 10 9 31 31 H 1.09000 * 110.24936 * 29.56948 * 12 11 10 32 32 H 1.09005 * 110.24745 * 151.61913 * 12 11 10 33 33 H 0.97002 * 119.99759 * 334.99871 * 15 13 12 34 34 H 1.07998 * 123.34176 * 0.02562 * 19 18 16 35 35 H 1.08003 * 122.46511 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.36001 * 81.34430 * 24 13 12 37 37 H 1.09003 * 109.35812 * 201.06466 * 24 13 12 38 38 H 1.09004 * 108.12414 * 149.83118 * 25 9 7 39 39 H 1.09005 * 107.97151 * 33.17584 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2293 -0.3127 9 7 1.3850 -2.3537 0.3981 10 6 0.1857 -2.2982 1.3002 11 6 -0.9814 -2.6841 0.5080 12 6 -0.8834 -4.0714 -0.1181 13 6 -0.2340 -3.8610 -1.4552 14 1 -0.3850 -2.8279 -1.7685 15 7 -0.8499 -4.7572 -2.4367 16 6 -0.8274 -4.4399 -3.7463 17 8 -0.2956 -3.4085 -4.1136 18 6 -1.4437 -5.3357 -4.7277 19 6 -1.4848 -5.1249 -6.0776 20 6 -2.1255 -6.1271 -6.7653 21 6 -2.5949 -7.1266 -6.0059 22 17 -3.4420 -8.5130 -6.6177 23 16 -2.2426 -6.8578 -4.3584 24 6 1.2848 -4.1531 -1.3812 25 6 1.8637 -3.6317 -0.0423 26 1 -0.4850 0.8400 -0.0004 27 1 0.0558 -1.2853 1.6814 28 1 0.3150 -2.9922 2.1307 29 1 -1.8611 -2.6556 1.1509 30 1 -1.1140 -1.9546 -0.2910 31 1 -0.2676 -4.7227 0.5022 32 1 -1.8780 -4.4991 -0.2450 33 1 -1.2740 -5.5790 -2.1440 34 1 -1.0556 -4.2571 -6.5562 35 1 -2.2428 -6.1103 -7.8388 36 1 1.4499 -5.2281 -1.4520 37 1 1.7893 -3.6548 -2.2091 38 1 1.6383 -4.3638 0.7332 39 1 2.9473 -3.5687 -0.1423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052912317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:45 Heat of formation + Delta-G solvation = 20.989178 kcal Electronic energy + Delta-G solvation = -23538.713960 eV Core-core repulsion = 20020.850753 eV Total energy + Delta-G solvation = -3517.863207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.80060 -38.30004 -37.53496 -36.74163 -34.65609 -32.36451 -31.57497 -30.45787 -29.23656 -26.25306 -25.17501 -23.98723 -23.06513 -21.32379 -20.26746 -19.60457 -19.07333 -18.51674 -16.75203 -16.35155 -15.89289 -15.36792 -15.10785 -14.74297 -14.27560 -13.97907 -13.73649 -13.69672 -13.54966 -13.18622 -12.96551 -12.43934 -12.23720 -11.87214 -11.82368 -11.65278 -11.45899 -11.23247 -11.16229 -10.76372 -10.63198 -10.39663 -10.26712 -10.07119 -9.78305 -9.64288 -9.49367 -9.34880 -9.01468 -8.96304 -8.62273 -8.35544 -6.68560 -5.75011 -3.13796 0.12550 0.70091 1.40154 1.80880 2.07125 3.30581 3.34499 3.44115 3.49346 3.50936 4.56021 4.79940 4.85977 5.04955 5.35034 5.41214 5.52033 5.54640 5.66170 5.80734 5.85564 5.93371 6.00489 6.25636 6.27581 6.39863 6.46833 6.68646 6.83213 6.88940 6.93592 7.00992 7.09852 7.21783 7.60062 7.72374 7.78592 7.98621 8.38806 8.46962 9.23247 9.90633 10.42684 11.32783 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.002846 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.775136 B = 9835.668691 C =10363.600873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.122 4.122 13 C 0.156 3.844 14 H 0.106 0.894 15 N -0.721 5.721 16 C 0.580 3.420 17 O -0.512 6.512 18 C -0.242 4.242 19 C -0.059 4.059 20 C -0.130 4.130 21 C -0.174 4.174 22 Cl -0.013 7.013 23 S 0.243 5.757 24 C -0.152 4.152 25 C 0.162 3.838 26 H 0.253 0.747 27 H 0.091 0.909 28 H 0.006 0.994 29 H 0.031 0.969 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.387 0.613 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 -17.071 -8.473 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.160 4.160 13 C 0.053 3.947 14 H 0.124 0.876 15 N -0.371 5.371 16 C 0.364 3.636 17 O -0.389 6.389 18 C -0.364 4.364 19 C -0.091 4.091 20 C -0.163 4.163 21 C -0.320 4.320 22 Cl 0.016 6.984 23 S 0.509 5.491 24 C -0.194 4.194 25 C 0.032 3.968 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.221 0.779 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.686 -17.079 -7.412 20.142 hybrid contribution 0.234 0.942 -1.673 1.934 sum -7.452 -16.137 -9.085 19.962 Atomic orbital electron populations 1.69940 1.05071 1.25349 1.54152 1.24880 0.95234 0.98208 1.01098 0.86392 0.78977 0.83578 0.77986 1.21036 1.21767 1.21244 1.19160 0.93649 0.85307 1.39807 0.91530 1.44273 1.33704 1.00917 1.52027 1.20166 0.85226 1.00603 0.89896 1.20930 0.98541 0.94884 1.02475 1.21382 0.98760 0.99968 0.95907 1.21377 0.92235 0.94759 0.86284 0.87614 1.46459 1.58765 1.25504 1.06398 1.16881 0.79784 0.84958 0.82002 1.90913 1.44224 1.24458 1.79326 1.25053 1.11291 1.01114 0.98898 1.20674 0.97431 0.99594 0.91385 1.20081 1.00891 0.93155 1.02179 1.24952 1.09333 0.97387 1.00342 1.98379 1.75063 1.38245 1.86728 1.83118 1.49993 1.14787 1.01190 1.23326 0.95053 0.98615 1.02427 1.20357 0.96436 0.88232 0.91766 0.93706 0.89100 0.97551 0.95059 0.87874 0.91708 0.92796 0.77931 0.81967 0.82870 0.93605 0.92362 0.95290 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 9.43 55.49 0.52 -24.41 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.82 29.60 -169.99 -5.03 16.78 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.76 9.62 -15.06 -0.14 -6.90 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 9 N -0.59 -14.20 2.61 -175.10 -0.46 -14.65 16 10 C 0.16 3.72 5.24 -5.20 -0.03 3.70 16 11 C -0.13 -2.67 5.03 -30.19 -0.15 -2.82 16 12 C -0.12 -2.09 5.34 -28.40 -0.15 -2.24 16 13 C 0.16 2.93 2.22 -68.39 -0.15 2.77 16 14 H 0.11 2.55 6.26 -51.93 -0.33 2.23 16 15 N -0.72 -11.18 4.97 -55.63 -0.28 -11.46 16 16 C 0.58 9.76 7.73 -12.95 -0.10 9.66 16 17 O -0.51 -11.00 16.50 5.18 0.09 -10.92 16 18 C -0.24 -3.15 6.45 -36.83 -0.24 -3.39 16 19 C -0.06 -0.68 10.01 -40.44 -0.40 -1.09 16 20 C -0.13 -1.25 10.08 -41.37 -0.42 -1.67 16 21 C -0.17 -1.69 6.82 29.25 0.20 -1.49 16 22 Cl -0.01 -0.11 29.27 -51.86 -1.52 -1.63 16 23 S 0.24 2.37 22.15 -107.50 -2.38 -0.01 16 24 C -0.15 -2.92 5.98 -24.76 -0.15 -3.07 16 25 C 0.16 3.34 5.17 -4.68 -0.02 3.32 16 26 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 27 H 0.09 2.31 6.05 -51.93 -0.31 2.00 16 28 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 2.53 5.29 -51.93 -0.27 2.26 16 31 H 0.06 1.05 6.29 -51.93 -0.33 0.73 16 32 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 33 H 0.39 4.72 7.59 -40.82 -0.31 4.41 16 34 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 39 H 0.03 0.72 7.98 -51.93 -0.41 0.30 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -29.81 339.46 -10.60 -40.41 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.81 Total: 3.96 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.85 Total: -3.19 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.21 Total: -50.52 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.78 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.38 Total: -0.01 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.81 -10.60 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052912317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.398 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds