Wall clock time and date at job start Tue Mar 31 2020 15:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.46961 * 239.99753 * 3 2 1 5 5 H 1.48504 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47438 * 119.99461 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00201 * 160.43155 * 7 2 1 9 9 N 1.36937 * 120.00177 * 340.43834 * 7 2 1 10 10 C 1.50174 * 120.53457 * 336.70635 * 9 7 2 11 11 C 1.46234 * 107.58984 * 109.60537 * 10 9 7 12 12 C 1.52525 * 114.27645 * 58.37170 * 11 10 9 13 13 C 1.50126 * 105.41806 * 270.59077 * 12 11 10 14 14 H 1.09006 * 109.20482 * 337.39127 * 13 12 11 15 15 N 1.46494 * 109.21343 * 218.03147 * 13 12 11 16 16 C 1.34765 * 120.00168 * 154.99991 * 15 13 12 17 17 O 1.21714 * 120.00266 * 359.97438 * 16 15 13 18 18 C 1.46472 * 120.00253 * 180.02562 * 16 15 13 19 19 C 1.36689 * 125.45150 * 180.02562 * 18 16 15 20 20 C 1.37405 * 113.31721 * 179.97438 * 19 18 16 21 21 C 1.34015 * 115.06919 * 0.02562 * 20 19 18 22 22 Cl 1.73606 * 124.52756 * 179.97438 * 21 20 19 23 23 S 1.70614 * 110.93959 * 359.72076 * 21 20 19 24 24 C 1.54840 * 110.81313 * 97.68352 * 13 12 11 25 25 C 1.43403 * 120.52131 * 156.59708 * 9 7 2 26 26 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.84554 * 350.06008 * 10 9 7 28 28 H 1.08997 * 109.84293 * 229.14622 * 10 9 7 29 29 H 1.08997 * 108.52575 * 179.61747 * 11 10 9 30 30 H 1.09001 * 108.52039 * 297.29040 * 11 10 9 31 31 H 1.09000 * 110.24936 * 29.56948 * 12 11 10 32 32 H 1.09005 * 110.24745 * 151.61913 * 12 11 10 33 33 H 0.97002 * 119.99759 * 334.99871 * 15 13 12 34 34 H 1.07998 * 123.34176 * 0.02562 * 19 18 16 35 35 H 1.08003 * 122.46511 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.36001 * 81.34430 * 24 13 12 37 37 H 1.09003 * 109.35812 * 201.06466 * 24 13 12 38 38 H 1.09004 * 108.12414 * 149.83118 * 25 9 7 39 39 H 1.09005 * 107.97151 * 33.17584 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2293 -0.3127 9 7 1.3850 -2.3537 0.3981 10 6 0.1857 -2.2982 1.3002 11 6 -0.9814 -2.6841 0.5080 12 6 -0.8834 -4.0714 -0.1181 13 6 -0.2340 -3.8610 -1.4552 14 1 -0.3850 -2.8279 -1.7685 15 7 -0.8499 -4.7572 -2.4367 16 6 -0.8274 -4.4399 -3.7463 17 8 -0.2956 -3.4085 -4.1136 18 6 -1.4437 -5.3357 -4.7277 19 6 -1.4848 -5.1249 -6.0776 20 6 -2.1255 -6.1271 -6.7653 21 6 -2.5949 -7.1266 -6.0059 22 17 -3.4420 -8.5130 -6.6177 23 16 -2.2426 -6.8578 -4.3584 24 6 1.2848 -4.1531 -1.3812 25 6 1.8637 -3.6317 -0.0423 26 1 -0.4850 0.8400 -0.0004 27 1 0.0558 -1.2853 1.6814 28 1 0.3150 -2.9922 2.1307 29 1 -1.8611 -2.6556 1.1509 30 1 -1.1140 -1.9546 -0.2910 31 1 -0.2676 -4.7227 0.5022 32 1 -1.8780 -4.4991 -0.2450 33 1 -1.2740 -5.5790 -2.1440 34 1 -1.0556 -4.2571 -6.5562 35 1 -2.2428 -6.1103 -7.8388 36 1 1.4499 -5.2281 -1.4520 37 1 1.7893 -3.6548 -2.2091 38 1 1.6383 -4.3638 0.7332 39 1 2.9473 -3.5687 -0.1423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052912317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:44 Heat of formation + Delta-G solvation = 3.212505 kcal Electronic energy + Delta-G solvation = -23539.484814 eV Core-core repulsion = 20020.850753 eV Total energy + Delta-G solvation = -3518.634061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15635 -39.53587 -38.73692 -37.58110 -36.28529 -34.09077 -33.30865 -32.01739 -30.39958 -27.98781 -26.27331 -25.66289 -24.61460 -22.60311 -21.82442 -20.92631 -20.40219 -19.65581 -18.58775 -17.41913 -17.13059 -16.93885 -16.50161 -16.28455 -15.69843 -15.60798 -15.16077 -15.02731 -14.70165 -14.44206 -14.13359 -13.93454 -13.67552 -13.47416 -13.20897 -13.14065 -12.66055 -12.62079 -12.51639 -12.38463 -12.15930 -11.94175 -11.91118 -11.76623 -11.57966 -11.19012 -11.11691 -11.10098 -10.42996 -10.13953 -9.77641 -9.72957 -8.62438 -7.81339 -5.21117 -0.78916 -0.12167 0.55089 1.02695 1.17260 1.47684 1.47909 1.54704 2.07973 2.08799 2.55515 3.31662 3.64096 3.69849 4.01401 4.02581 4.12778 4.24392 4.33471 4.49020 4.64498 4.71018 4.73758 4.86095 4.90321 4.93362 5.05826 5.09044 5.19588 5.28141 5.30901 5.40221 5.51864 5.63259 5.68859 5.79581 6.21955 6.44057 6.46646 7.13758 7.21363 7.95126 8.42523 9.22593 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.002846 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.775136 B = 9835.668691 C =10363.600873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.043 4.043 3 Si 0.955 3.045 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.057 0.943 9 N -0.602 5.602 10 C 0.166 3.834 11 C -0.123 4.123 12 C -0.108 4.108 13 C 0.168 3.832 14 H 0.045 0.955 15 N -0.708 5.708 16 C 0.579 3.421 17 O -0.574 6.574 18 C -0.281 4.281 19 C -0.054 4.054 20 C -0.131 4.131 21 C -0.173 4.173 22 Cl 0.004 6.996 23 S 0.303 5.697 24 C -0.142 4.142 25 C 0.156 3.844 26 H 0.246 0.754 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.408 0.592 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.081 0.919 37 H 0.019 0.981 38 H 0.061 0.939 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 -20.345 -8.372 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.075 0.925 9 N -0.324 5.324 10 C 0.043 3.957 11 C -0.162 4.162 12 C -0.146 4.146 13 C 0.064 3.936 14 H 0.063 0.937 15 N -0.359 5.359 16 C 0.365 3.635 17 O -0.455 6.455 18 C -0.402 4.402 19 C -0.088 4.088 20 C -0.164 4.164 21 C -0.320 4.320 22 Cl 0.033 6.967 23 S 0.569 5.431 24 C -0.184 4.184 25 C 0.028 3.972 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.245 0.755 34 H 0.173 0.827 35 H 0.194 0.806 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.780 -20.423 -7.285 23.393 hybrid contribution 0.526 1.841 -1.766 2.605 sum -8.254 -18.582 -9.051 22.256 Atomic orbital electron populations 1.70122 1.05818 1.25121 1.54979 1.25507 0.96033 1.00659 1.01721 0.85540 0.77775 0.80429 0.77834 1.21365 1.22063 1.20455 1.19337 0.93536 0.86882 1.39481 0.92489 1.44442 1.34109 1.01287 1.52588 1.20131 0.85518 0.99404 0.90644 1.20738 0.98349 0.96015 1.01133 1.21299 1.00839 0.98150 0.94283 1.20917 0.92480 0.92374 0.87824 0.93658 1.46182 1.58354 1.25708 1.05678 1.17372 0.78813 0.84609 0.82666 1.90880 1.46983 1.27283 1.80313 1.24684 1.13945 1.03140 0.98470 1.20803 0.96872 0.99853 0.91225 1.20179 1.00496 0.92393 1.03315 1.25174 1.08439 0.97652 1.00696 1.98396 1.74563 1.37214 1.86538 1.82811 1.48150 1.11523 1.00585 1.23195 0.94920 1.00169 1.00092 1.20497 0.96028 0.87515 0.93188 0.94498 0.92593 0.94771 0.93393 0.92297 0.89464 0.89573 0.75506 0.82701 0.80590 0.90010 0.96223 0.92056 0.95435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.92 9.43 21.65 0.20 -52.72 16 2 C -0.04 -2.43 4.91 84.86 0.42 -2.02 16 3 Si 0.95 46.32 29.60 68.60 2.03 48.35 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.26 -14.63 9.62 84.03 0.81 -13.82 16 8 H 0.06 3.21 7.88 -2.91 -0.02 3.19 16 9 N -0.60 -29.43 2.61 -707.88 -1.85 -31.28 16 10 C 0.17 7.50 5.24 83.58 0.44 7.94 16 11 C -0.12 -5.04 5.03 28.35 0.14 -4.90 16 12 C -0.11 -3.44 5.34 29.51 0.16 -3.29 16 13 C 0.17 6.30 2.22 44.69 0.10 6.40 16 14 H 0.05 2.31 6.26 -2.38 -0.01 2.30 16 15 N -0.71 -21.33 4.97 -448.14 -2.23 -23.56 16 16 C 0.58 19.84 7.73 86.39 0.67 20.51 16 17 O -0.57 -26.21 16.50 -4.39 -0.07 -26.29 16 18 C -0.28 -7.10 6.45 24.05 0.16 -6.94 16 19 C -0.05 -1.22 10.01 21.71 0.22 -1.01 16 20 C -0.13 -2.24 10.08 21.11 0.21 -2.03 16 21 C -0.17 -2.84 6.82 66.86 0.46 -2.39 16 22 Cl 0.00 0.06 29.27 -2.72 -0.08 -0.02 16 23 S 0.30 5.02 22.15 -56.49 -1.25 3.77 16 24 C -0.14 -5.41 5.98 31.87 0.19 -5.21 16 25 C 0.16 6.33 5.17 87.60 0.45 6.78 16 26 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 27 H 0.06 2.91 6.05 -2.39 -0.01 2.90 16 28 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 3.00 5.29 -2.39 -0.01 2.99 16 31 H 0.09 2.45 6.29 -2.39 -0.02 2.44 16 32 H 0.09 2.21 7.85 -2.38 -0.02 2.19 16 33 H 0.41 8.81 7.59 -92.71 -0.70 8.10 16 34 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 2.09 6.89 -2.39 -0.02 2.07 16 39 H 0.03 1.14 7.98 -2.38 -0.02 1.12 16 Total: -1.00 -69.73 339.46 1.56 -68.17 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.39 Total: 13.55 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 4.41 Total: 0.02 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.87 Total: -107.56 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.07 Total: -26.29 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.25 Total: 3.77 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -69.73 1.56 -68.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052912317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.378 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds