Wall clock time and date at job start Tue Mar 31 2020 15:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47202 * 299.99741 * 3 2 1 6 6 H 1.48501 * 109.47021 * 59.99845 * 3 2 1 7 7 C 1.38812 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 196.76564 * 7 2 1 9 9 N 1.36929 * 120.00045 * 17.03500 * 7 2 1 10 10 C 1.44579 * 118.64484 * 206.96748 * 9 7 2 11 11 C 1.54865 * 109.60064 * 270.70802 * 10 9 7 12 12 C 1.47094 * 110.32035 * 288.73112 * 11 10 9 13 13 C 1.52567 * 114.32482 * 62.80377 * 12 11 10 14 14 H 1.09005 * 109.49125 * 34.97586 * 13 12 11 15 15 N 1.46505 * 109.48602 * 155.01900 * 13 12 11 16 16 C 1.34780 * 119.99387 * 205.00107 * 15 13 12 17 17 O 1.21711 * 120.00418 * 359.97438 * 16 15 13 18 18 C 1.46465 * 119.99541 * 180.02562 * 16 15 13 19 19 C 1.36700 * 125.44827 * 179.71557 * 18 16 15 20 20 C 1.37401 * 113.31513 * 179.86405 * 19 18 16 21 21 C 1.34014 * 115.07614 * 0.42657 * 20 19 18 22 22 Cl 1.73599 * 124.53413 * 179.72808 * 21 20 19 23 23 S 1.70616 * 110.93558 * 359.76401 * 21 20 19 24 24 C 1.50876 * 109.35817 * 274.98257 * 13 12 11 25 25 C 1.47605 * 118.64443 * 26.70587 * 9 7 2 26 26 H 0.96999 * 119.99735 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.44731 * 30.74813 * 10 9 7 28 28 H 1.09000 * 109.44994 * 150.66788 * 10 9 7 29 29 H 1.08998 * 109.32525 * 48.99550 * 11 10 9 30 30 H 1.09000 * 109.32453 * 168.64587 * 11 10 9 31 31 H 1.09004 * 108.50674 * 184.05463 * 12 11 10 32 32 H 1.08998 * 108.51505 * 301.70411 * 12 11 10 33 33 H 0.96995 * 120.00090 * 24.99747 * 15 13 12 34 34 H 1.07999 * 123.33686 * 0.03383 * 19 18 16 35 35 H 1.08000 * 122.46496 * 180.19442 * 20 19 18 36 36 H 1.09000 * 109.36643 * 212.07541 * 24 13 12 37 37 H 1.08994 * 109.37016 * 331.69507 * 24 13 12 38 38 H 1.08998 * 108.94537 * 258.57539 * 25 9 7 39 39 H 1.09001 * 108.94895 * 17.19865 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0558 -1.2219 0.2703 9 7 1.3706 -2.3621 -0.3463 10 6 1.8587 -3.6111 0.1942 11 6 2.9373 -4.1991 -0.7489 12 6 2.3178 -4.6929 -1.9883 13 6 1.6345 -3.6137 -2.8226 14 1 2.1942 -2.6819 -2.7408 15 7 1.5895 -4.0354 -4.2249 16 6 1.5144 -3.1122 -5.2040 17 8 1.4834 -1.9283 -4.9232 18 6 1.4688 -3.5337 -6.6059 19 6 1.3870 -2.6964 -7.6833 20 6 1.3630 -3.3592 -8.8867 21 6 1.4141 -4.6956 -8.8001 22 17 1.3918 -5.7715 -10.1622 23 16 1.5030 -5.1981 -7.1720 24 6 0.2293 -3.4037 -2.3147 25 6 0.2076 -2.2853 -1.2520 26 1 -0.4850 0.8401 -0.0004 27 1 2.2936 -3.4354 1.1781 28 1 1.0319 -4.3156 0.2838 29 1 3.6644 -3.4245 -0.9926 30 1 3.4434 -5.0243 -0.2479 31 1 3.0896 -5.1640 -2.5969 32 1 1.5756 -5.4474 -1.7275 33 1 1.6138 -4.9788 -4.4486 34 1 1.3480 -1.6205 -7.5973 35 1 1.3035 -2.8415 -9.8326 36 1 -0.4177 -3.1248 -3.1463 37 1 -0.1361 -4.3290 -1.8695 38 1 -0.7057 -2.3696 -0.6631 39 1 0.2142 -1.3184 -1.7553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052912318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:49 Heat of formation + Delta-G solvation = 13.444056 kcal Electronic energy + Delta-G solvation = -23494.638953 eV Core-core repulsion = 19976.448565 eV Total energy + Delta-G solvation = -3518.190388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.90312 -38.33599 -37.52137 -36.76183 -34.70151 -32.90489 -31.17655 -30.60353 -29.46118 -26.16232 -25.20337 -23.86432 -23.25448 -21.47697 -20.34609 -19.56674 -19.22878 -18.60529 -16.67068 -16.41542 -16.00761 -15.60291 -15.10337 -14.77335 -14.31905 -14.03802 -13.84904 -13.65510 -13.52918 -13.20609 -13.01405 -12.76896 -12.41914 -11.94949 -11.90356 -11.69168 -11.56250 -11.20035 -11.07959 -10.87640 -10.74983 -10.38833 -10.19696 -10.08618 -9.95990 -9.76931 -9.69111 -9.54662 -9.06683 -8.99777 -8.77186 -8.30624 -6.60193 -5.70953 -3.14544 0.08541 0.66423 1.36163 1.77674 2.03623 3.21861 3.24993 3.44802 3.53132 3.54251 4.58313 4.73798 4.82179 5.01899 5.13787 5.28730 5.49088 5.50023 5.56973 5.72229 5.74547 5.90176 5.99534 6.09635 6.20640 6.25275 6.44117 6.50042 6.57636 6.65469 6.75815 6.86338 6.97507 7.06681 7.46772 7.62129 7.76885 7.91140 8.30775 8.55136 9.31137 9.98342 10.42919 11.36651 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.003050 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.866037 B = 9177.990712 C =10063.550725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.156 3.844 11 C -0.145 4.145 12 C -0.107 4.107 13 C 0.154 3.846 14 H 0.106 0.894 15 N -0.722 5.722 16 C 0.581 3.419 17 O -0.507 6.507 18 C -0.244 4.244 19 C -0.056 4.056 20 C -0.130 4.130 21 C -0.173 4.173 22 Cl -0.012 7.012 23 S 0.243 5.757 24 C -0.148 4.148 25 C 0.183 3.817 26 H 0.252 0.748 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.388 0.612 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -14.366 -17.130 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.145 4.145 13 C 0.052 3.948 14 H 0.124 0.876 15 N -0.372 5.372 16 C 0.365 3.635 17 O -0.383 6.383 18 C -0.365 4.365 19 C -0.089 4.089 20 C -0.163 4.163 21 C -0.319 4.319 22 Cl 0.017 6.983 23 S 0.508 5.492 24 C -0.188 4.188 25 C 0.058 3.942 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.221 0.779 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.411 -14.896 -16.309 22.219 hybrid contribution 0.287 1.628 -1.288 2.095 sum 2.698 -13.269 -17.597 22.204 Atomic orbital electron populations 1.70068 1.05264 1.25319 1.53906 1.25008 0.95208 0.98373 1.00535 0.86300 0.79463 0.84288 0.77171 1.20292 1.21501 1.21874 1.19190 0.92734 0.85192 1.41802 0.91745 1.43684 1.34418 1.01850 1.51294 1.20699 0.93815 0.88342 0.94356 1.21448 1.00585 1.00013 0.96572 1.20582 0.99303 0.97377 0.97225 1.20615 0.98074 0.99592 0.76551 0.87560 1.46249 1.74948 1.08501 1.07512 1.16842 0.77557 0.86288 0.82789 1.90942 1.48622 1.16176 1.82609 1.25002 1.16126 0.96774 0.98607 1.20691 0.97029 1.01959 0.89187 1.20087 1.04134 0.91561 1.00524 1.24952 1.15192 0.95928 0.95819 1.98381 1.97057 1.62404 1.40498 1.83099 1.67515 1.05256 0.93303 1.22508 0.95134 1.01030 1.00104 1.20996 0.88998 0.95628 0.88623 0.93773 0.93532 0.94979 0.91845 0.92930 0.93349 0.92673 0.77889 0.81893 0.82819 0.92548 0.93424 0.95490 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 11.12 55.49 0.62 -25.99 16 2 C 0.01 0.21 4.83 -17.43 -0.08 0.13 16 3 Si 0.90 22.42 29.59 -169.99 -5.03 17.39 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.26 -7.12 9.43 -15.06 -0.14 -7.26 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.50 2.26 -171.87 -0.39 -14.89 16 10 C 0.16 3.15 5.65 -4.08 -0.02 3.13 16 11 C -0.15 -2.44 5.74 -28.58 -0.16 -2.60 16 12 C -0.11 -1.61 4.70 -29.79 -0.14 -1.75 16 13 C 0.15 2.71 2.06 -69.22 -0.14 2.57 16 14 H 0.11 2.35 6.92 -51.93 -0.36 1.99 16 15 N -0.72 -10.51 4.93 -56.44 -0.28 -10.79 16 16 C 0.58 9.39 7.60 -12.95 -0.10 9.29 16 17 O -0.51 -10.60 16.50 5.18 0.09 -10.52 16 18 C -0.24 -3.05 6.45 -36.83 -0.24 -3.29 16 19 C -0.06 -0.64 10.01 -40.44 -0.40 -1.04 16 20 C -0.13 -1.21 10.08 -41.37 -0.42 -1.63 16 21 C -0.17 -1.61 6.82 29.25 0.20 -1.41 16 22 Cl -0.01 -0.10 29.27 -51.86 -1.52 -1.62 16 23 S 0.24 2.24 22.15 -107.50 -2.38 -0.14 16 24 C -0.15 -2.83 5.39 -27.12 -0.15 -2.97 16 25 C 0.18 4.43 4.71 -2.76 -0.01 4.42 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 28 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 32 H 0.05 0.76 7.35 -51.93 -0.38 0.38 16 33 H 0.39 4.36 7.71 -40.82 -0.31 4.04 16 34 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 37 H 0.05 0.82 7.31 -51.93 -0.38 0.44 16 38 H 0.03 0.70 8.03 -51.93 -0.42 0.29 16 39 H 0.08 2.15 6.39 -51.93 -0.33 1.82 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -31.38 344.83 -10.59 -41.97 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.08 Total: 1.81 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.81 Total: -2.42 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.05 Total: -51.67 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.38 Total: -0.14 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.38 -10.59 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052912318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.410 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds