Wall clock time and date at job start Tue Mar 31 2020 15:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47202 * 299.99741 * 3 2 1 6 6 H 1.48501 * 109.47021 * 59.99845 * 3 2 1 7 7 C 1.38812 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 196.76564 * 7 2 1 9 9 N 1.36929 * 120.00045 * 17.03500 * 7 2 1 10 10 C 1.44579 * 118.64484 * 206.96748 * 9 7 2 11 11 C 1.54865 * 109.60064 * 270.70802 * 10 9 7 12 12 C 1.47094 * 110.32035 * 288.73112 * 11 10 9 13 13 C 1.52567 * 114.32482 * 62.80377 * 12 11 10 14 14 H 1.09005 * 109.49125 * 34.97586 * 13 12 11 15 15 N 1.46505 * 109.48602 * 155.01900 * 13 12 11 16 16 C 1.34780 * 119.99387 * 205.00107 * 15 13 12 17 17 O 1.21711 * 120.00418 * 359.97438 * 16 15 13 18 18 C 1.46465 * 119.99541 * 180.02562 * 16 15 13 19 19 C 1.36700 * 125.44827 * 179.71557 * 18 16 15 20 20 C 1.37401 * 113.31513 * 179.86405 * 19 18 16 21 21 C 1.34014 * 115.07614 * 0.42657 * 20 19 18 22 22 Cl 1.73599 * 124.53413 * 179.72808 * 21 20 19 23 23 S 1.70616 * 110.93558 * 359.76401 * 21 20 19 24 24 C 1.50876 * 109.35817 * 274.98257 * 13 12 11 25 25 C 1.47605 * 118.64443 * 26.70587 * 9 7 2 26 26 H 0.96999 * 119.99735 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.44731 * 30.74813 * 10 9 7 28 28 H 1.09000 * 109.44994 * 150.66788 * 10 9 7 29 29 H 1.08998 * 109.32525 * 48.99550 * 11 10 9 30 30 H 1.09000 * 109.32453 * 168.64587 * 11 10 9 31 31 H 1.09004 * 108.50674 * 184.05463 * 12 11 10 32 32 H 1.08998 * 108.51505 * 301.70411 * 12 11 10 33 33 H 0.96995 * 120.00090 * 24.99747 * 15 13 12 34 34 H 1.07999 * 123.33686 * 0.03383 * 19 18 16 35 35 H 1.08000 * 122.46496 * 180.19442 * 20 19 18 36 36 H 1.09000 * 109.36643 * 212.07541 * 24 13 12 37 37 H 1.08994 * 109.37016 * 331.69507 * 24 13 12 38 38 H 1.08998 * 108.94537 * 258.57539 * 25 9 7 39 39 H 1.09001 * 108.94895 * 17.19865 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0558 -1.2219 0.2703 9 7 1.3706 -2.3621 -0.3463 10 6 1.8587 -3.6111 0.1942 11 6 2.9373 -4.1991 -0.7489 12 6 2.3178 -4.6929 -1.9883 13 6 1.6345 -3.6137 -2.8226 14 1 2.1942 -2.6819 -2.7408 15 7 1.5895 -4.0354 -4.2249 16 6 1.5144 -3.1122 -5.2040 17 8 1.4834 -1.9283 -4.9232 18 6 1.4688 -3.5337 -6.6059 19 6 1.3870 -2.6964 -7.6833 20 6 1.3630 -3.3592 -8.8867 21 6 1.4141 -4.6956 -8.8001 22 17 1.3918 -5.7715 -10.1622 23 16 1.5030 -5.1981 -7.1720 24 6 0.2293 -3.4037 -2.3147 25 6 0.2076 -2.2853 -1.2520 26 1 -0.4850 0.8401 -0.0004 27 1 2.2936 -3.4354 1.1781 28 1 1.0319 -4.3156 0.2838 29 1 3.6644 -3.4245 -0.9926 30 1 3.4434 -5.0243 -0.2479 31 1 3.0896 -5.1640 -2.5969 32 1 1.5756 -5.4474 -1.7275 33 1 1.6138 -4.9788 -4.4486 34 1 1.3480 -1.6205 -7.5973 35 1 1.3035 -2.8415 -9.8326 36 1 -0.4177 -3.1248 -3.1463 37 1 -0.1361 -4.3290 -1.8695 38 1 -0.7057 -2.3696 -0.6631 39 1 0.2142 -1.3184 -1.7553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052912318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:48 Heat of formation + Delta-G solvation = -5.835121 kcal Electronic energy + Delta-G solvation = -23495.474961 eV Core-core repulsion = 19976.448565 eV Total energy + Delta-G solvation = -3519.026396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20104 -39.48529 -38.70892 -37.58025 -36.34558 -34.54027 -32.75923 -32.39926 -30.51345 -27.87246 -26.38171 -25.33393 -24.99319 -22.63778 -21.72007 -21.02658 -20.49688 -19.65736 -18.54846 -17.59502 -17.17210 -16.93422 -16.48039 -16.26631 -15.90205 -15.57787 -15.15332 -14.88535 -14.73868 -14.48470 -14.34192 -14.02166 -13.69148 -13.63457 -13.28005 -13.02161 -12.78247 -12.61404 -12.54382 -12.46783 -12.11602 -12.02137 -11.91836 -11.74965 -11.51699 -11.42642 -11.33096 -11.15133 -10.43846 -10.24963 -9.79739 -9.73056 -8.63459 -7.85426 -5.30185 -0.79439 -0.12334 0.54452 1.02596 1.16804 1.40953 1.45495 1.53378 2.02088 2.07887 2.51079 3.29104 3.65725 3.71565 3.82354 4.01229 4.08252 4.24266 4.37212 4.46245 4.47991 4.68424 4.71063 4.81694 4.89241 4.96275 5.01651 5.09352 5.15071 5.22558 5.24943 5.34393 5.50252 5.55982 5.62657 5.70709 5.77442 6.42553 6.43186 7.12165 7.19674 7.97854 8.35890 9.19618 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.003050 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.866037 B = 9177.990712 C =10063.550725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.105 4.105 13 C 0.162 3.838 14 H 0.055 0.945 15 N -0.706 5.706 16 C 0.580 3.420 17 O -0.570 6.570 18 C -0.282 4.282 19 C -0.054 4.054 20 C -0.132 4.132 21 C -0.173 4.173 22 Cl 0.004 6.996 23 S 0.305 5.695 24 C -0.132 4.132 25 C 0.196 3.804 26 H 0.246 0.754 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.409 0.591 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.048 0.952 37 H 0.078 0.922 38 H -0.002 1.002 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -17.807 -18.694 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.226 1.226 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.172 4.172 12 C -0.142 4.142 13 C 0.058 3.942 14 H 0.073 0.927 15 N -0.358 5.358 16 C 0.367 3.633 17 O -0.450 6.450 18 C -0.403 4.403 19 C -0.088 4.088 20 C -0.164 4.164 21 C -0.320 4.320 22 Cl 0.033 6.967 23 S 0.572 5.428 24 C -0.172 4.172 25 C 0.070 3.930 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.172 0.828 35 H 0.193 0.807 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.016 0.984 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.605 -18.433 -17.873 25.927 hybrid contribution -0.068 2.582 -0.877 2.727 sum 3.537 -15.852 -18.750 24.806 Atomic orbital electron populations 1.70211 1.06518 1.25356 1.55923 1.25709 0.95963 1.01310 1.01562 0.85391 0.78931 0.80791 0.76529 1.19019 1.22644 1.21460 1.19482 0.92845 0.86528 1.40050 0.91751 1.43859 1.34200 1.02735 1.51837 1.20968 0.95307 0.86867 0.94807 1.21286 0.98834 1.00336 0.96773 1.20550 1.00700 0.96654 0.96324 1.20272 0.96335 0.98922 0.78630 0.92654 1.45961 1.74233 1.09468 1.06098 1.17327 0.76070 0.85551 0.84373 1.90912 1.51473 1.18756 1.83879 1.24670 1.19218 0.99663 0.96708 1.20801 0.96218 1.01862 0.89878 1.20174 1.04066 0.91671 1.00539 1.25176 1.13806 0.96340 0.96645 1.98397 1.96881 1.61767 1.39695 1.82776 1.66038 1.01601 0.92395 1.22298 0.96580 1.00057 0.98297 1.20639 0.87961 0.95308 0.89079 0.94477 0.94322 0.93251 0.94366 0.89016 0.90115 0.89890 0.75409 0.82772 0.80690 0.93289 0.90392 0.98354 0.95527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 11.12 21.65 0.24 -57.85 16 2 C -0.05 -2.96 4.83 84.86 0.41 -2.55 16 3 Si 0.95 47.95 29.59 68.60 2.03 49.98 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 6 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.26 -14.64 9.43 84.03 0.79 -13.85 16 8 H 0.06 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.60 -30.40 2.26 -697.69 -1.58 -31.97 16 10 C 0.15 5.76 5.65 87.37 0.49 6.26 16 11 C -0.13 -4.08 5.74 29.39 0.17 -3.91 16 12 C -0.10 -2.77 4.70 28.61 0.13 -2.64 16 13 C 0.16 5.61 2.06 44.16 0.09 5.70 16 14 H 0.06 2.54 6.92 -2.38 -0.02 2.52 16 15 N -0.71 -19.69 4.93 -450.68 -2.22 -21.91 16 16 C 0.58 18.98 7.60 86.39 0.66 19.63 16 17 O -0.57 -25.29 16.50 -4.38 -0.07 -25.37 16 18 C -0.28 -6.81 6.45 24.05 0.16 -6.65 16 19 C -0.05 -1.20 10.01 21.71 0.22 -0.98 16 20 C -0.13 -2.20 10.08 21.11 0.21 -1.98 16 21 C -0.17 -2.74 6.82 66.86 0.46 -2.28 16 22 Cl 0.00 0.05 29.27 -2.72 -0.08 -0.03 16 23 S 0.31 4.75 22.15 -56.49 -1.25 3.50 16 24 C -0.13 -5.08 5.39 30.34 0.16 -4.91 16 25 C 0.20 9.95 4.71 86.61 0.41 10.36 16 26 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 28 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 32 H 0.08 1.83 7.35 -2.39 -0.02 1.81 16 33 H 0.41 7.90 7.71 -92.71 -0.71 7.18 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 37 H 0.08 2.52 7.31 -2.39 -0.02 2.50 16 38 H 0.00 -0.09 8.03 -2.39 -0.02 -0.11 16 39 H 0.03 1.59 6.39 -2.39 -0.02 1.57 16 Total: -1.00 -74.12 344.83 1.79 -72.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.36 Total: 9.13 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 4.36 Total: 2.19 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -3.56 Total: -111.73 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.07 Total: -25.37 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.25 Total: 3.50 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -74.12 1.79 -72.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052912318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.489 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds