Wall clock time and date at job start Tue Mar 31 2020 15:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48501 * 109.46907 * 274.98306 * 3 2 1 5 5 H 1.48496 * 109.47377 * 34.98451 * 3 2 1 6 6 H 1.48501 * 109.47212 * 154.98776 * 3 2 1 7 7 C 1.38817 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99525 * 187.06708 * 7 2 1 9 9 N 1.36938 * 119.99760 * 7.06129 * 7 2 1 10 10 C 1.47022 * 125.64896 * 354.88028 * 9 7 2 11 11 C 1.54328 * 107.26739 * 178.90272 * 10 9 7 12 12 H 1.09003 * 110.71839 * 96.16964 * 11 10 9 13 13 O 1.42907 * 110.71808 * 219.26562 * 11 10 9 14 14 C 1.55151 * 102.94504 * 337.80685 * 11 10 9 15 15 H 1.08996 * 111.00652 * 277.43106 * 14 11 10 16 16 N 1.46494 * 111.00557 * 153.57630 * 14 11 10 17 17 C 1.34781 * 120.00041 * 155.00157 * 16 14 11 18 18 O 1.21561 * 120.00086 * 359.97438 * 17 16 14 19 19 C 1.47698 * 119.99649 * 180.02562 * 17 16 14 20 20 C 1.39668 * 120.16541 * 359.97438 * 19 17 16 21 21 C 1.37845 * 119.90433 * 179.97438 * 20 19 17 22 22 C 1.38451 * 120.23350 * 0.02562 * 21 20 19 23 23 C 1.38298 * 120.32313 * 359.97268 * 22 21 20 24 24 Cl 1.73597 * 119.95472 * 180.02562 * 23 22 21 25 25 C 1.38437 * 120.09207 * 359.76573 * 23 22 21 26 26 F 1.35103 * 120.11442 * 180.25205 * 25 23 22 27 27 C 1.47425 * 125.64396 * 174.83686 * 9 7 2 28 28 H 0.96998 * 120.00290 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88197 * 59.48881 * 10 9 7 30 30 H 1.08997 * 110.01106 * 298.38732 * 10 9 7 31 31 H 0.96701 * 113.99683 * 296.15449 * 13 11 10 32 32 H 0.97006 * 120.00035 * 334.99820 * 16 14 11 33 33 H 1.08005 * 120.04524 * 0.03111 * 20 19 17 34 34 H 1.08004 * 119.88653 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.84158 * 179.97438 * 22 21 20 36 36 H 1.08996 * 110.36845 * 323.00255 * 27 9 7 37 37 H 1.09000 * 110.36879 * 85.33004 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2056 0.1156 9 7 1.3334 -2.3836 -0.1447 10 6 -0.1281 -2.5322 -0.2032 11 6 -0.4285 -4.0332 -0.3998 12 1 -0.6384 -4.5129 0.5562 13 8 -1.5187 -4.2162 -1.3054 14 6 0.8921 -4.5752 -1.0077 15 1 0.9282 -4.3997 -2.0828 16 7 1.0650 -5.9978 -0.7038 17 6 1.8218 -6.7714 -1.5072 18 8 2.3605 -6.2887 -2.4842 19 6 1.9956 -8.2058 -1.2011 20 6 1.3778 -8.7640 -0.0797 21 6 1.5432 -10.1035 0.2006 22 6 2.3203 -10.8978 -0.6253 23 6 2.9364 -10.3550 -1.7382 24 17 3.9080 -11.3599 -2.7676 25 6 2.7749 -9.0126 -2.0354 26 9 3.3724 -8.4830 -3.1252 27 6 1.9496 -3.7171 -0.2693 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5254 -1.9616 -1.0427 30 1 -0.5760 -2.1833 0.7272 31 1 -2.3588 -3.8583 -0.9871 32 1 0.6349 -6.3831 0.0757 33 1 0.7705 -8.1472 0.5663 34 1 1.0657 -10.5347 1.0680 35 1 2.4460 -11.9464 -0.3995 36 1 2.8666 -3.6581 -0.8554 37 1 2.1548 -4.1338 0.7168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077611464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:17 Heat of formation + Delta-G solvation = -71.833495 kcal Electronic energy + Delta-G solvation = -25228.613423 eV Core-core repulsion = 21140.511947 eV Total energy + Delta-G solvation = -4088.101476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.09707 -40.28540 -38.91930 -37.77900 -36.86707 -35.11791 -34.22167 -32.16324 -31.27499 -30.86615 -28.41808 -27.11943 -24.92372 -24.04602 -23.05163 -21.07512 -20.57594 -20.24913 -18.55454 -17.49516 -17.24696 -16.78912 -16.68939 -16.08786 -15.81070 -15.62961 -15.05780 -14.72697 -14.57876 -14.08707 -14.04898 -13.60000 -13.33425 -13.20468 -12.75687 -12.73589 -12.54420 -12.14319 -12.00532 -11.91853 -11.55919 -11.44109 -11.29374 -10.93555 -10.82892 -10.19112 -9.98872 -9.94038 -9.89512 -9.49288 -9.38818 -9.14185 -8.91152 -8.64658 -6.94841 -5.80715 -3.13965 0.22539 0.53014 1.55924 2.52823 3.04236 3.35075 3.38603 3.44378 3.45419 3.65999 4.21278 4.27377 4.40428 4.47376 4.57425 4.64123 4.95324 5.14650 5.33210 5.38770 5.39148 5.52638 5.53638 5.61431 5.68789 5.76519 6.01519 6.05897 6.12943 6.41313 6.57079 6.80188 7.25830 7.44049 7.51976 7.70604 8.06984 8.13350 8.22243 9.11667 9.71942 10.34822 11.31558 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.002680 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.310893 B =10443.663315 C =11007.553074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.108 0.892 16 N -0.706 5.706 17 C 0.556 3.444 18 O -0.516 6.516 19 C -0.154 4.154 20 C -0.053 4.053 21 C -0.126 4.126 22 C -0.061 4.061 23 C -0.088 4.088 24 Cl -0.044 7.044 25 C 0.169 3.831 26 F -0.100 7.100 27 C 0.130 3.870 28 H 0.254 0.746 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.377 0.623 32 H 0.396 0.604 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.052 0.948 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -24.022 2.622 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.009 3.991 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.126 0.874 16 N -0.357 5.357 17 C 0.341 3.659 18 O -0.392 6.392 19 C -0.159 4.159 20 C -0.072 4.072 21 C -0.144 4.144 22 C -0.080 4.080 23 C -0.116 4.116 24 Cl -0.015 7.015 25 C 0.148 3.852 26 F -0.077 7.077 27 C 0.002 3.998 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.224 0.776 32 H 0.231 0.769 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.070 0.930 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.583 -23.759 1.423 23.809 hybrid contribution -0.060 0.943 0.526 1.081 sum 0.523 -22.817 1.948 22.906 Atomic orbital electron populations 1.69927 1.04993 1.25303 1.56671 1.24839 0.95764 0.97806 1.01780 0.86071 0.78691 0.83226 0.77628 1.21447 1.21723 1.20521 1.19092 0.91293 0.82200 1.43267 0.90070 1.44235 1.01172 1.00984 1.86323 1.21849 0.85547 0.88069 1.01878 1.23450 0.85900 0.99082 0.90683 0.92487 1.86469 1.20074 1.82963 1.47301 1.22340 0.94625 0.77568 1.02173 0.87374 1.45775 1.50775 1.10259 1.28861 1.17814 0.79774 0.84898 0.83409 1.90880 1.46940 1.74222 1.27183 1.20153 1.02771 0.94987 0.97972 1.21386 0.95922 0.95594 0.94307 1.21129 0.99550 0.93274 1.00479 1.21172 0.94191 1.01141 0.91446 1.20939 1.02636 0.90533 0.97443 1.98402 1.69067 1.67592 1.66470 1.17399 0.93405 0.89457 0.84982 1.91657 1.80114 1.86190 1.49771 1.21858 0.95039 0.86309 0.96549 0.93605 0.91905 0.93394 0.77564 0.76895 0.83836 0.83571 0.83492 0.92982 0.95822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.36 55.49 0.57 -25.88 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 22.00 29.56 -169.99 -5.02 16.97 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 9 N -0.60 -15.14 3.39 -170.07 -0.58 -15.72 16 10 C 0.15 3.53 5.16 -3.06 -0.02 3.51 16 11 C 0.07 1.23 3.97 -24.90 -0.10 1.13 16 12 H 0.06 0.86 8.00 -51.93 -0.42 0.45 16 13 O -0.56 -9.46 13.40 -35.23 -0.47 -9.93 16 14 C 0.14 2.55 3.15 -65.78 -0.21 2.35 16 15 H 0.11 2.34 7.54 -51.93 -0.39 1.95 16 16 N -0.71 -10.20 5.15 -52.72 -0.27 -10.47 16 17 C 0.56 8.80 7.77 -12.39 -0.10 8.70 16 18 O -0.52 -10.49 14.98 5.31 0.08 -10.41 16 19 C -0.15 -1.87 5.88 -104.92 -0.62 -2.49 16 20 C -0.05 -0.42 9.54 -39.19 -0.37 -0.79 16 21 C -0.13 -0.74 10.03 -39.65 -0.40 -1.13 16 22 C -0.06 -0.41 9.82 -39.48 -0.39 -0.80 16 23 C -0.09 -0.87 6.32 -39.49 -0.25 -1.12 16 24 Cl -0.04 -0.43 28.61 -51.86 -1.48 -1.91 16 25 C 0.17 2.16 7.26 -38.93 -0.28 1.88 16 26 F -0.10 -1.57 15.12 2.25 0.03 -1.53 16 27 C 0.13 2.73 6.93 -2.53 -0.02 2.72 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.06 1.65 7.21 -51.93 -0.37 1.28 16 30 H 0.05 1.19 7.61 -51.93 -0.40 0.79 16 31 H 0.38 4.76 9.12 45.56 0.42 5.18 16 32 H 0.40 4.22 6.60 -40.82 -0.27 3.95 16 33 H 0.14 0.77 6.40 -52.48 -0.34 0.43 16 34 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 35 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -34.47 334.48 -8.10 -42.57 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -3.00 Total: 4.13 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -2.99 Total: 7.15 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.27 Total: -52.06 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.39 Total: -20.34 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.47 -8.10 -42.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077611464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.267 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds