Wall clock time and date at job start Tue Mar 31 2020 15:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48501 * 109.46907 * 274.98306 * 3 2 1 5 5 H 1.48496 * 109.47377 * 34.98451 * 3 2 1 6 6 H 1.48501 * 109.47212 * 154.98776 * 3 2 1 7 7 C 1.38817 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99525 * 187.06708 * 7 2 1 9 9 N 1.36938 * 119.99760 * 7.06129 * 7 2 1 10 10 C 1.47022 * 125.64896 * 354.88028 * 9 7 2 11 11 C 1.54328 * 107.26739 * 178.90272 * 10 9 7 12 12 H 1.09003 * 110.71839 * 96.16964 * 11 10 9 13 13 O 1.42907 * 110.71808 * 219.26562 * 11 10 9 14 14 C 1.55151 * 102.94504 * 337.80685 * 11 10 9 15 15 H 1.08996 * 111.00652 * 277.43106 * 14 11 10 16 16 N 1.46494 * 111.00557 * 153.57630 * 14 11 10 17 17 C 1.34781 * 120.00041 * 155.00157 * 16 14 11 18 18 O 1.21561 * 120.00086 * 359.97438 * 17 16 14 19 19 C 1.47698 * 119.99649 * 180.02562 * 17 16 14 20 20 C 1.39668 * 120.16541 * 359.97438 * 19 17 16 21 21 C 1.37845 * 119.90433 * 179.97438 * 20 19 17 22 22 C 1.38451 * 120.23350 * 0.02562 * 21 20 19 23 23 C 1.38298 * 120.32313 * 359.97268 * 22 21 20 24 24 Cl 1.73597 * 119.95472 * 180.02562 * 23 22 21 25 25 C 1.38437 * 120.09207 * 359.76573 * 23 22 21 26 26 F 1.35103 * 120.11442 * 180.25205 * 25 23 22 27 27 C 1.47425 * 125.64396 * 174.83686 * 9 7 2 28 28 H 0.96998 * 120.00290 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88197 * 59.48881 * 10 9 7 30 30 H 1.08997 * 110.01106 * 298.38732 * 10 9 7 31 31 H 0.96701 * 113.99683 * 296.15449 * 13 11 10 32 32 H 0.97006 * 120.00035 * 334.99820 * 16 14 11 33 33 H 1.08005 * 120.04524 * 0.03111 * 20 19 17 34 34 H 1.08004 * 119.88653 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.84158 * 179.97438 * 22 21 20 36 36 H 1.08996 * 110.36845 * 323.00255 * 27 9 7 37 37 H 1.09000 * 110.36879 * 85.33004 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2056 0.1156 9 7 1.3334 -2.3836 -0.1447 10 6 -0.1281 -2.5322 -0.2032 11 6 -0.4285 -4.0332 -0.3998 12 1 -0.6384 -4.5129 0.5562 13 8 -1.5187 -4.2162 -1.3054 14 6 0.8921 -4.5752 -1.0077 15 1 0.9282 -4.3997 -2.0828 16 7 1.0650 -5.9978 -0.7038 17 6 1.8218 -6.7714 -1.5072 18 8 2.3605 -6.2887 -2.4842 19 6 1.9956 -8.2058 -1.2011 20 6 1.3778 -8.7640 -0.0797 21 6 1.5432 -10.1035 0.2006 22 6 2.3203 -10.8978 -0.6253 23 6 2.9364 -10.3550 -1.7382 24 17 3.9080 -11.3599 -2.7676 25 6 2.7749 -9.0126 -2.0354 26 9 3.3724 -8.4830 -3.1252 27 6 1.9496 -3.7171 -0.2693 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5254 -1.9616 -1.0427 30 1 -0.5760 -2.1833 0.7272 31 1 -2.3588 -3.8583 -0.9871 32 1 0.6349 -6.3831 0.0757 33 1 0.7705 -8.1472 0.5663 34 1 1.0657 -10.5347 1.0680 35 1 2.4460 -11.9464 -0.3995 36 1 2.8666 -3.6581 -0.8554 37 1 2.1548 -4.1338 0.7168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077611464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:16 Heat of formation + Delta-G solvation = -98.523076 kcal Electronic energy + Delta-G solvation = -25229.770770 eV Core-core repulsion = 21140.511947 eV Total energy + Delta-G solvation = -4089.258823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.08407 -41.41177 -39.98086 -39.14807 -37.60424 -36.68667 -35.72518 -33.80712 -32.39295 -31.55152 -30.14297 -28.78350 -26.55279 -25.19533 -23.80409 -22.52279 -22.07822 -21.73338 -19.59191 -18.96015 -18.50126 -18.05497 -17.81674 -17.22021 -17.05020 -16.70686 -16.40253 -15.97568 -15.74511 -15.67639 -15.41616 -14.73720 -14.49939 -14.41047 -14.28711 -14.07025 -13.77195 -13.41080 -13.22054 -13.17754 -12.80192 -12.75618 -12.69004 -12.59304 -12.18171 -12.09256 -11.91178 -11.57089 -11.26950 -10.90316 -10.77347 -10.38943 -10.09762 -9.85193 -8.98104 -7.91980 -5.27391 -0.52225 -0.15323 0.84937 1.44374 1.47588 1.55418 1.61223 1.85340 2.45281 2.48104 2.90041 3.10585 3.27278 3.35729 3.52055 3.70534 3.76813 3.86264 4.03385 4.07898 4.15972 4.30834 4.43330 4.52013 4.72229 4.75136 4.80013 4.93810 4.98549 5.11313 5.31828 5.36348 5.45791 5.53866 5.65374 6.12135 6.37799 6.87027 7.02958 7.06796 7.67474 8.29882 9.18261 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.002680 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.310893 B =10443.663315 C =11007.553074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.159 3.841 11 C 0.094 3.906 12 H 0.103 0.897 13 O -0.570 6.570 14 C 0.151 3.849 15 H 0.070 0.930 16 N -0.687 5.687 17 C 0.553 3.447 18 O -0.574 6.574 19 C -0.176 4.176 20 C -0.042 4.042 21 C -0.103 4.103 22 C -0.045 4.045 23 C -0.096 4.096 24 Cl -0.050 7.050 25 C 0.131 3.869 26 F -0.131 7.131 27 C 0.131 3.869 28 H 0.250 0.750 29 H 0.021 0.979 30 H 0.029 0.971 31 H 0.397 0.603 32 H 0.419 0.581 33 H 0.175 0.825 34 H 0.196 0.804 35 H 0.182 0.818 36 H 0.030 0.970 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -26.853 5.378 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.033 3.967 11 C 0.033 3.967 12 H 0.120 0.880 13 O -0.378 6.378 14 C 0.045 3.955 15 H 0.088 0.912 16 N -0.340 5.340 17 C 0.341 3.659 18 O -0.454 6.454 19 C -0.180 4.180 20 C -0.060 4.060 21 C -0.121 4.121 22 C -0.063 4.063 23 C -0.124 4.124 24 Cl -0.021 7.021 25 C 0.110 3.890 26 F -0.110 7.110 27 C 0.004 3.996 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.248 0.752 32 H 0.259 0.741 33 H 0.192 0.808 34 H 0.213 0.787 35 H 0.199 0.801 36 H 0.049 0.951 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.379 -26.641 4.221 26.976 hybrid contribution 0.214 1.708 -0.295 1.747 sum -0.164 -24.933 3.926 25.241 Atomic orbital electron populations 1.70115 1.06111 1.25611 1.57442 1.25639 0.96711 1.00860 1.01987 0.85085 0.78008 0.79196 0.77200 1.21811 1.21484 1.19248 1.19422 0.91677 0.83666 1.43043 0.90162 1.44498 1.02362 1.01827 1.86279 1.21670 0.84311 0.91592 0.99122 1.23158 0.85841 0.95158 0.92509 0.87992 1.86438 1.20867 1.82803 1.47690 1.21787 0.94423 0.79673 0.99639 0.91205 1.45437 1.50677 1.08290 1.29564 1.18455 0.78519 0.86548 0.82391 1.90850 1.49211 1.75664 1.29698 1.19929 1.05257 0.92509 1.00325 1.21793 0.94692 0.97007 0.92528 1.21693 0.97641 0.91934 1.00838 1.21710 0.92200 1.02891 0.89499 1.21128 1.03296 0.89432 0.98531 1.98398 1.69391 1.67303 1.67044 1.17870 0.95036 0.91019 0.85094 1.91567 1.81020 1.86861 1.51502 1.21942 0.94818 0.85284 0.97544 0.94057 0.96086 0.95288 0.75229 0.74146 0.80782 0.78712 0.80062 0.95136 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.62 10.36 21.65 0.22 -55.40 16 2 C -0.06 -3.31 5.48 84.86 0.46 -2.85 16 3 Si 0.98 45.95 29.56 68.60 2.03 47.97 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.25 -14.17 10.27 84.03 0.86 -13.31 16 8 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 9 N -0.62 -32.13 3.39 -691.97 -2.35 -34.48 16 10 C 0.16 7.49 5.16 86.73 0.45 7.94 16 11 C 0.09 3.20 3.97 31.78 0.13 3.32 16 12 H 0.10 2.66 8.00 -2.39 -0.02 2.64 16 13 O -0.57 -18.32 13.40 -148.98 -2.00 -20.32 16 14 C 0.15 5.61 3.15 46.38 0.15 5.75 16 15 H 0.07 3.17 7.54 -2.39 -0.02 3.15 16 16 N -0.69 -18.84 5.15 -438.98 -2.26 -21.09 16 17 C 0.55 17.59 7.77 86.74 0.67 18.27 16 18 O -0.57 -24.78 14.98 -3.91 -0.06 -24.84 16 19 C -0.18 -4.05 5.88 -20.06 -0.12 -4.17 16 20 C -0.04 -0.47 9.54 22.52 0.21 -0.26 16 21 C -0.10 -0.59 10.03 22.23 0.22 -0.37 16 22 C -0.04 -0.40 9.82 22.33 0.22 -0.18 16 23 C -0.10 -1.75 6.32 22.33 0.14 -1.61 16 24 Cl -0.05 -0.94 28.61 -2.72 -0.08 -1.02 16 25 C 0.13 3.36 7.26 22.69 0.16 3.53 16 26 F -0.13 -4.44 15.12 44.97 0.68 -3.76 16 27 C 0.13 5.56 6.93 86.86 0.60 6.16 16 28 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.02 1.15 7.21 -2.39 -0.02 1.13 16 30 H 0.03 1.46 7.61 -2.39 -0.02 1.44 16 31 H 0.40 9.27 9.12 -74.06 -0.68 8.60 16 32 H 0.42 7.34 6.60 -92.70 -0.61 6.73 16 33 H 0.17 0.82 6.40 -2.91 -0.02 0.80 16 34 H 0.20 -0.61 8.06 -2.91 -0.02 -0.63 16 35 H 0.18 0.43 8.06 -2.91 -0.02 0.40 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -82.50 334.48 0.22 -82.28 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -0.14 Total: 8.42 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 4.17 Total: 22.24 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.38 Total: -110.97 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.05 Total: -45.16 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.68 Total: -3.76 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -82.50 0.22 -82.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077611464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.246 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds