Wall clock time and date at job start Tue Mar 31 2020 15:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48498 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47165 * 299.99830 * 3 2 1 6 6 H 1.48493 * 109.47310 * 60.00231 * 3 2 1 7 7 C 1.38806 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 35.00014 * 10 9 7 12 12 C 1.53006 * 109.46998 * 275.00375 * 10 9 7 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 C 1.52997 * 109.47007 * 155.00515 * 10 9 7 17 17 H 1.08996 * 109.46952 * 60.00083 * 16 10 9 18 18 N 1.46496 * 109.46953 * 299.99748 * 16 10 9 19 19 C 1.34781 * 119.99775 * 154.99854 * 18 16 10 20 20 O 1.21640 * 120.00145 * 0.02562 * 19 18 16 21 21 C 1.47156 * 120.00026 * 179.97438 * 19 18 16 22 22 C 1.36048 * 123.46707 * 0.02848 * 21 19 18 23 23 S 1.70439 * 110.83322 * 179.97438 * 22 21 19 24 24 C 1.75502 * 92.45932 * 0.02562 * 23 22 21 25 25 C 1.32850 * 110.57560 * 359.71071 * 24 23 22 26 26 Cl 1.73601 * 123.46708 * 180.24918 * 25 24 23 27 27 H 0.96997 * 120.00066 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99690 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 30 30 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 31 31 H 1.09002 * 109.46719 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.47839 * 299.99931 * 13 12 10 33 33 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 35 35 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 36 36 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00575 * 335.00735 * 18 16 10 38 38 H 1.08004 * 124.58369 * 0.02562 * 22 21 19 39 39 H 1.08000 * 124.71358 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 2.4222 -4.0355 -1.4376 13 6 3.1877 -5.3602 -1.4375 14 6 2.3110 -6.4558 -0.8278 15 6 1.9470 -6.0771 0.6092 16 6 1.1810 -4.7521 0.6090 17 1 0.2704 -4.8583 0.0194 18 7 0.8325 -4.3894 1.9849 19 6 -0.2856 -4.8863 2.5502 20 8 -1.0051 -5.6362 1.9180 21 6 -0.6354 -4.5225 3.9325 22 6 0.1174 -3.6915 4.7029 23 16 -0.5841 -3.4918 6.2433 24 6 -1.9274 -4.5514 5.8523 25 6 -1.8165 -5.0065 4.6091 26 17 -2.9692 -6.0772 3.8752 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 1.5115 -4.1417 -2.0270 30 1 3.0471 -3.2551 -1.8718 31 1 3.4474 -5.6298 -2.4612 32 1 4.0984 -5.2536 -0.8481 33 1 2.8562 -7.3996 -0.8280 34 1 1.4003 -6.5625 -1.4172 35 1 2.8577 -5.9704 1.1986 36 1 1.3228 -6.8579 1.0437 37 1 1.4063 -3.7916 2.4891 38 1 1.0350 -3.2211 4.3815 39 1 -2.7349 -4.7953 6.5267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085235850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:24 Heat of formation + Delta-G solvation = -11.641505 kcal Electronic energy + Delta-G solvation = -23723.176707 eV Core-core repulsion = 20203.898527 eV Total energy + Delta-G solvation = -3519.278180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88282 -38.21333 -36.97667 -35.80726 -34.05073 -33.72656 -31.16706 -30.35168 -28.91615 -27.60081 -25.00082 -23.73628 -22.51188 -21.12439 -20.77590 -19.82030 -18.98080 -18.22691 -17.16135 -16.90771 -15.78862 -15.14024 -14.78809 -14.73097 -14.07981 -13.91103 -13.64973 -13.49599 -13.34982 -13.15368 -13.00083 -12.90677 -12.60899 -12.10704 -12.06796 -11.58526 -11.42480 -11.09368 -10.95286 -10.83727 -10.75845 -10.71455 -10.55503 -10.32077 -10.15698 -9.76082 -9.65413 -9.44945 -9.07270 -8.94547 -8.61562 -8.39492 -7.00682 -5.80192 -3.10203 0.63488 1.15886 1.58752 1.79666 2.58880 3.38302 3.44318 3.46433 3.46916 3.61369 4.52728 4.55315 5.04232 5.07024 5.15258 5.19854 5.31349 5.33308 5.51190 5.52917 5.71669 5.72954 5.79192 5.86221 5.90205 5.96241 5.98663 6.12326 6.33732 6.45977 6.49360 6.51406 6.58590 6.85884 6.90261 7.08749 7.65376 7.91306 8.36710 8.59108 9.48563 10.05383 10.40633 11.41577 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009621 B = 0.004675 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.452910 B = 5987.502176 C = 7943.918965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.143 3.857 17 H 0.086 0.914 18 N -0.701 5.701 19 C 0.574 3.426 20 O -0.528 6.528 21 C -0.142 4.142 22 C -0.199 4.199 23 S 0.221 5.779 24 C -0.243 4.243 25 C -0.004 4.004 26 Cl -0.021 7.021 27 H 0.254 0.746 28 H 0.385 0.615 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.400 0.600 38 H 0.180 0.820 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -11.724 11.360 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.038 3.962 17 H 0.104 0.896 18 N -0.350 5.350 19 C 0.358 3.642 20 O -0.405 6.405 21 C -0.160 4.160 22 C -0.337 4.337 23 S 0.486 5.514 24 C -0.379 4.379 25 C -0.043 4.043 26 Cl 0.008 6.992 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.197 0.803 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.277 -11.373 12.124 16.672 hybrid contribution -0.066 0.554 -1.209 1.332 sum 1.211 -10.818 10.915 15.415 Atomic orbital electron populations 1.69685 1.05059 1.25519 1.57265 1.24736 0.95423 0.97586 1.02934 0.86184 0.78765 0.84395 0.77203 1.20608 1.21906 1.21958 1.19237 0.90904 0.83999 1.43064 0.91179 1.42432 1.05843 0.99453 1.88523 1.20466 0.93858 0.85801 0.93629 0.93244 1.22215 0.99965 0.95524 0.99664 1.21579 0.98502 0.95699 0.99961 1.21468 0.99923 0.97983 0.95789 1.21879 0.99954 0.97300 0.97144 1.21318 0.99111 0.93992 0.81777 0.89605 1.45729 1.24807 1.49024 1.15435 1.17363 0.81251 0.80770 0.84842 1.90813 1.50345 1.36063 1.63318 1.20068 0.96088 1.03013 0.96808 1.25698 1.05494 1.02674 0.99876 1.83044 1.14326 1.43457 1.10613 1.25377 1.06097 1.06744 0.99675 1.20651 0.93029 0.97931 0.92681 1.98389 1.56213 1.61917 1.82683 0.93550 0.78091 0.92416 0.91626 0.92700 0.92427 0.92410 0.91932 0.92110 0.91831 0.76538 0.80254 0.80598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -17.02 4.95 -53.42 -0.26 -17.28 16 10 C 0.17 3.21 2.29 -67.93 -0.16 3.05 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.28 5.50 -26.73 -0.15 -2.42 16 13 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 15 C -0.12 -1.76 5.50 -26.71 -0.15 -1.90 16 16 C 0.14 2.42 1.98 -67.91 -0.13 2.29 16 17 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 18 N -0.70 -11.54 4.88 -54.94 -0.27 -11.81 16 19 C 0.57 10.07 7.76 -12.64 -0.10 9.98 16 20 O -0.53 -10.62 14.72 5.24 0.08 -10.54 16 21 C -0.14 -2.14 5.98 -104.61 -0.63 -2.77 16 22 C -0.20 -2.44 10.38 29.95 0.31 -2.13 16 23 S 0.22 2.13 23.02 -107.50 -2.47 -0.35 16 24 C -0.24 -2.66 11.00 28.88 0.32 -2.34 16 25 C 0.00 -0.06 6.49 -38.99 -0.25 -0.31 16 26 Cl -0.02 -0.31 27.24 -51.86 -1.41 -1.72 16 27 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 28 H 0.39 10.13 7.80 -40.82 -0.32 9.81 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 6.11 7.10 -40.82 -0.29 5.82 16 38 H 0.18 1.94 7.01 -52.48 -0.37 1.57 16 39 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -30.81 349.79 -10.00 -40.81 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.14 Total: 12.41 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.49 Total: -6.80 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.19 Total: -55.75 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.47 Total: -0.35 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.41 Total: -1.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.81 -10.00 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085235850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.170 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds