Wall clock time and date at job start Tue Mar 31 2020 15:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48498 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47165 * 299.99830 * 3 2 1 6 6 H 1.48493 * 109.47310 * 60.00231 * 3 2 1 7 7 C 1.38806 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 35.00014 * 10 9 7 12 12 C 1.53006 * 109.46998 * 275.00375 * 10 9 7 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 C 1.52997 * 109.47007 * 155.00515 * 10 9 7 17 17 H 1.08996 * 109.46952 * 60.00083 * 16 10 9 18 18 N 1.46496 * 109.46953 * 299.99748 * 16 10 9 19 19 C 1.34781 * 119.99775 * 154.99854 * 18 16 10 20 20 O 1.21640 * 120.00145 * 0.02562 * 19 18 16 21 21 C 1.47156 * 120.00026 * 179.97438 * 19 18 16 22 22 C 1.36048 * 123.46707 * 0.02848 * 21 19 18 23 23 S 1.70439 * 110.83322 * 179.97438 * 22 21 19 24 24 C 1.75502 * 92.45932 * 0.02562 * 23 22 21 25 25 C 1.32850 * 110.57560 * 359.71071 * 24 23 22 26 26 Cl 1.73601 * 123.46708 * 180.24918 * 25 24 23 27 27 H 0.96997 * 120.00066 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99690 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 30 30 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 31 31 H 1.09002 * 109.46719 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.47839 * 299.99931 * 13 12 10 33 33 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 35 35 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 36 36 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00575 * 335.00735 * 18 16 10 38 38 H 1.08004 * 124.58369 * 0.02562 * 22 21 19 39 39 H 1.08000 * 124.71358 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 2.4222 -4.0355 -1.4376 13 6 3.1877 -5.3602 -1.4375 14 6 2.3110 -6.4558 -0.8278 15 6 1.9470 -6.0771 0.6092 16 6 1.1810 -4.7521 0.6090 17 1 0.2704 -4.8583 0.0194 18 7 0.8325 -4.3894 1.9849 19 6 -0.2856 -4.8863 2.5502 20 8 -1.0051 -5.6362 1.9180 21 6 -0.6354 -4.5225 3.9325 22 6 0.1174 -3.6915 4.7029 23 16 -0.5841 -3.4918 6.2433 24 6 -1.9274 -4.5514 5.8523 25 6 -1.8165 -5.0065 4.6091 26 17 -2.9692 -6.0772 3.8752 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 1.5115 -4.1417 -2.0270 30 1 3.0471 -3.2551 -1.8718 31 1 3.4474 -5.6298 -2.4612 32 1 4.0984 -5.2536 -0.8481 33 1 2.8562 -7.3996 -0.8280 34 1 1.4003 -6.5625 -1.4172 35 1 2.8577 -5.9704 1.1986 36 1 1.3228 -6.8579 1.0437 37 1 1.4063 -3.7916 2.4891 38 1 1.0350 -3.2211 4.3815 39 1 -2.7349 -4.7953 6.5267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085235850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:23 Heat of formation + Delta-G solvation = -30.916531 kcal Electronic energy + Delta-G solvation = -23724.012535 eV Core-core repulsion = 20203.898527 eV Total energy + Delta-G solvation = -3520.114007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18837 -39.47152 -38.14054 -36.87442 -35.80534 -35.09487 -32.99047 -31.44608 -30.19563 -29.13701 -26.12211 -25.58382 -23.71432 -22.56328 -21.99391 -21.10283 -20.15910 -19.43358 -18.88923 -18.08339 -17.18156 -16.64860 -16.09298 -16.07301 -15.56173 -15.39320 -14.96177 -14.67067 -14.62225 -14.42001 -14.30518 -14.05626 -13.83580 -13.54573 -13.48242 -12.91046 -12.84487 -12.57117 -12.46991 -12.19552 -12.15259 -12.00403 -12.00192 -11.75488 -11.62492 -11.42947 -11.10592 -10.97764 -10.69901 -10.07747 -9.90167 -9.33133 -8.98526 -7.89907 -5.19183 -0.33712 0.27520 0.64857 0.72530 1.48145 1.49966 1.58883 1.61130 2.19639 2.35593 2.57581 3.43366 3.60302 3.70298 3.82374 3.95413 4.15836 4.25103 4.29472 4.32998 4.38852 4.44661 4.51310 4.59822 4.70713 4.75995 4.86859 4.96175 5.02942 5.17970 5.25029 5.30616 5.31839 5.47630 5.54195 5.58170 5.69820 6.29387 6.60623 7.28099 7.36167 8.09893 8.34455 9.33238 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009621 B = 0.004675 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.452910 B = 5987.502176 C = 7943.918965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.302 1.302 6 H -0.295 1.295 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.151 3.849 17 H 0.052 0.948 18 N -0.698 5.698 19 C 0.567 3.433 20 O -0.565 6.565 21 C -0.178 4.178 22 C -0.206 4.206 23 S 0.312 5.688 24 C -0.235 4.235 25 C -0.036 4.036 26 Cl -0.042 7.042 27 H 0.247 0.753 28 H 0.368 0.632 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.405 0.595 38 H 0.191 0.809 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -11.925 13.190 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.230 1.230 6 H -0.223 1.223 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.045 3.955 17 H 0.070 0.930 18 N -0.347 5.347 19 C 0.353 3.647 20 O -0.445 6.445 21 C -0.196 4.196 22 C -0.345 4.345 23 S 0.577 5.423 24 C -0.371 4.371 25 C -0.074 4.074 26 Cl -0.013 7.013 27 H 0.056 0.944 28 H 0.199 0.801 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.241 0.759 38 H 0.208 0.792 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.608 -11.603 13.967 18.512 hybrid contribution -0.729 0.621 -1.677 1.931 sum 2.879 -10.982 12.290 16.731 Atomic orbital electron populations 1.69858 1.06719 1.25604 1.59885 1.25477 0.96092 1.00823 1.04185 0.85162 0.78450 0.80377 0.76290 1.18736 1.22984 1.22266 1.19616 0.91390 0.84782 1.40247 0.90170 1.42600 1.05134 1.00761 1.88529 1.20669 0.93826 0.84247 0.94828 0.92179 1.22090 0.99457 0.97497 0.97831 1.21509 0.98362 0.93279 1.01544 1.21473 0.99806 0.99099 0.94455 1.21806 0.99989 0.95021 0.98467 1.21167 0.97641 0.95005 0.81651 0.93007 1.45702 1.24871 1.49032 1.15133 1.17831 0.80799 0.80157 0.85928 1.90776 1.51368 1.37805 1.64559 1.19954 0.97897 1.05655 0.96087 1.25997 1.05618 1.01410 1.01436 1.82791 1.11665 1.40621 1.07205 1.25835 1.07080 1.05444 0.98759 1.20773 0.93225 0.99494 0.93907 1.98370 1.56867 1.62763 1.83293 0.94403 0.80123 0.94233 0.93063 0.90897 0.90834 0.89485 0.92984 0.90216 0.92633 0.75879 0.79211 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.77 13.06 21.65 0.28 -58.48 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 44.75 29.55 68.60 2.03 46.77 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.23 -11.92 9.93 84.03 0.83 -11.08 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.73 -35.10 4.95 -322.93 -1.60 -36.70 16 10 C 0.17 6.39 2.29 44.99 0.10 6.49 16 11 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 12 C -0.13 -4.34 5.50 30.60 0.17 -4.17 16 13 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 14 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 15 C -0.11 -3.11 5.50 30.61 0.17 -2.94 16 16 C 0.15 5.19 1.98 45.01 0.09 5.28 16 17 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 18 N -0.70 -23.44 4.88 -445.98 -2.18 -25.61 16 19 C 0.57 20.63 7.76 86.58 0.67 21.30 16 20 O -0.56 -23.97 14.72 -4.16 -0.06 -24.03 16 21 C -0.18 -5.39 5.98 -19.86 -0.12 -5.51 16 22 C -0.21 -4.75 10.38 67.31 0.70 -4.05 16 23 S 0.31 5.02 23.02 -56.49 -1.30 3.72 16 24 C -0.24 -4.64 11.00 66.64 0.73 -3.91 16 25 C -0.04 -1.00 6.49 22.68 0.15 -0.85 16 26 Cl -0.04 -1.28 27.24 -2.72 -0.07 -1.35 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.37 20.15 7.80 -92.71 -0.72 19.42 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 12.37 7.10 -92.71 -0.66 11.72 16 38 H 0.19 3.81 7.01 -2.91 -0.02 3.79 16 39 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -69.34 349.79 1.13 -68.21 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.29 Total: 35.51 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.32 Total: -8.03 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -3.49 Total: -120.80 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.30 Total: 3.72 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -69.34 1.13 -68.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085235850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.289 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds