Wall clock time and date at job start Tue Mar 31 2020 15:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 C 1.53003 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47087 * 59.99958 * 13 12 10 15 15 C 1.52997 * 109.47114 * 300.00120 * 14 13 12 16 16 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 17 17 H 1.08995 * 109.47266 * 59.99845 * 16 10 9 18 18 N 1.46503 * 109.47247 * 299.99162 * 16 10 9 19 19 C 1.34774 * 119.99671 * 154.99774 * 18 16 10 20 20 O 1.21699 * 120.00534 * 0.02562 * 19 18 16 21 21 C 1.46573 * 119.99858 * 180.02562 * 19 18 16 22 22 C 1.36678 * 125.45488 * 180.02562 * 21 19 18 23 23 C 1.37530 * 113.28742 * 179.97438 * 22 21 19 24 24 Cl 1.73603 * 122.45873 * 180.02562 * 23 22 21 25 25 C 1.33872 * 115.07835 * 359.97438 * 23 22 21 26 26 S 1.70614 * 110.96247 * 359.73053 * 25 23 22 27 27 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 30 30 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 31 31 H 1.09000 * 109.47191 * 180.02562 * 13 12 10 32 32 H 1.08995 * 109.46928 * 299.99922 * 13 12 10 33 33 H 1.08995 * 109.47266 * 60.00171 * 14 13 12 34 34 H 1.09003 * 109.47147 * 180.02562 * 14 13 12 35 35 H 1.08997 * 109.47293 * 180.02562 * 15 14 13 36 36 H 1.09004 * 109.46812 * 300.00187 * 15 14 13 37 37 H 0.96998 * 119.99938 * 335.01407 * 18 16 10 38 38 H 1.07998 * 123.35084 * 359.97438 * 22 21 19 39 39 H 1.08004 * 124.51914 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 6 3.1868 -5.3682 -1.4208 14 6 2.3088 -6.4602 -0.8062 15 6 1.9444 -6.0741 0.6288 16 6 1.1804 -4.7490 0.6220 17 1 0.2700 -4.8582 0.0328 18 7 0.8316 -4.3794 1.9961 19 6 -0.2867 -4.8734 2.5635 20 8 -1.0064 -5.6267 1.9347 21 6 -0.6360 -4.5032 3.9380 22 6 -1.7382 -4.9368 4.6201 23 6 -1.8205 -4.4327 5.8970 24 17 -3.1242 -4.8287 6.9728 25 6 -0.8210 -3.6150 6.2498 26 16 0.3007 -3.4375 4.9765 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 1.5118 -4.1521 -2.0170 30 1 3.0474 -3.2648 -1.8657 31 1 3.4468 -5.6431 -2.4430 32 1 4.0972 -5.2594 -0.8314 33 1 1.3984 -6.5690 -1.3955 34 1 2.8536 -7.4043 -0.8008 35 1 1.3193 -6.8522 1.0668 36 1 2.8549 -5.9653 1.2181 37 1 1.4054 -3.7791 2.4974 38 1 -2.4713 -5.6084 4.1983 39 1 -0.7340 -3.1351 7.2134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085352083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:28 Heat of formation + Delta-G solvation = -14.855193 kcal Electronic energy + Delta-G solvation = -23414.105374 eV Core-core repulsion = 19894.687838 eV Total energy + Delta-G solvation = -3519.417536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88595 -38.42555 -37.56095 -36.05556 -34.08665 -33.83127 -31.18905 -30.39208 -29.03630 -27.70416 -25.15096 -23.75194 -22.51807 -21.16252 -20.76214 -19.93604 -19.30533 -18.39262 -17.18775 -16.43434 -15.83072 -15.66508 -14.93417 -14.87006 -14.15590 -14.00564 -13.73002 -13.64043 -13.44089 -13.31681 -13.01859 -12.88346 -12.65566 -12.21388 -12.11942 -11.51652 -11.42371 -11.11509 -10.97295 -10.94604 -10.88225 -10.78061 -10.60260 -10.36902 -10.22331 -9.90231 -9.71998 -9.67222 -9.08652 -8.95483 -8.71186 -8.55318 -7.02937 -5.81056 -3.11447 0.33734 1.12982 1.48364 2.07122 2.39178 3.28652 3.38813 3.41274 3.44326 3.45636 4.52171 4.67688 4.93742 5.02856 5.06388 5.12365 5.26384 5.46887 5.49017 5.52414 5.67754 5.74926 5.82028 5.85733 5.91510 5.93287 5.94552 6.08865 6.27884 6.42172 6.43775 6.45192 6.54796 6.77720 6.84495 7.02951 7.63711 7.73417 8.35551 8.37962 9.47564 10.03226 10.38538 11.40655 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.004204 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.335018 B = 6658.298127 C = 8786.621911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.141 3.859 17 H 0.088 0.912 18 N -0.700 5.700 19 C 0.591 3.409 20 O -0.533 6.533 21 C -0.246 4.246 22 C -0.061 4.061 23 C -0.058 4.058 24 Cl -0.053 7.053 25 C -0.242 4.242 26 S 0.270 5.730 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.400 0.600 38 H 0.162 0.838 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 -11.481 10.523 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.164 4.164 16 C 0.036 3.964 17 H 0.106 0.894 18 N -0.349 5.349 19 C 0.376 3.624 20 O -0.412 6.412 21 C -0.367 4.367 22 C -0.094 4.094 23 C -0.099 4.099 24 Cl -0.025 7.025 25 C -0.381 4.381 26 S 0.537 5.463 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.179 0.821 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.964 -11.047 10.002 15.194 hybrid contribution -1.159 0.618 0.637 1.460 sum 1.805 -10.428 10.639 15.006 Atomic orbital electron populations 1.69662 1.05083 1.25821 1.57017 1.24730 0.95418 0.97588 1.02754 0.86325 0.78556 0.83758 0.77834 1.21297 1.21747 1.21268 1.19149 0.90875 0.83969 1.43491 0.91223 1.42419 1.05827 0.99453 1.88603 1.20469 0.93863 0.85736 0.93715 0.93107 1.22217 1.00024 0.95555 0.99564 1.21587 0.98522 0.95674 1.00018 1.21468 0.99969 0.98067 0.95643 1.21876 1.00046 0.97092 0.97369 1.21381 0.99358 0.94237 0.81397 0.89429 1.45775 1.24545 1.48626 1.15949 1.16777 0.81230 0.80575 0.83848 1.90810 1.50893 1.36557 1.62961 1.24676 1.02951 1.08858 1.00244 1.20443 0.97570 0.99929 0.91416 1.19497 0.93846 1.03483 0.93079 1.98359 1.47424 1.93211 1.63470 1.25277 1.00487 1.05633 1.06669 1.83411 1.21332 1.41230 1.00348 0.93405 0.78096 0.92383 0.91506 0.92625 0.92363 0.91889 0.92301 0.91794 0.91940 0.76494 0.82082 0.80482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -16.84 4.95 -53.43 -0.26 -17.10 16 10 C 0.17 3.15 2.29 -67.93 -0.16 3.00 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.22 5.51 -26.73 -0.15 -2.37 16 13 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 15 C -0.12 -1.71 5.49 -26.76 -0.15 -1.86 16 16 C 0.14 2.34 1.97 -67.95 -0.13 2.20 16 17 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 18 N -0.70 -11.39 4.90 -55.17 -0.27 -11.66 16 19 C 0.59 10.07 7.75 -12.90 -0.10 9.97 16 20 O -0.53 -10.52 16.50 5.19 0.09 -10.43 16 21 C -0.25 -3.58 6.45 -36.79 -0.24 -3.82 16 22 C -0.06 -0.83 9.89 -40.40 -0.40 -1.22 16 23 C -0.06 -0.70 6.25 -41.37 -0.26 -0.96 16 24 Cl -0.05 -0.58 29.10 -51.86 -1.51 -2.09 16 25 C -0.24 -2.60 10.77 29.20 0.31 -2.29 16 26 S 0.27 3.15 22.15 -107.50 -2.38 0.77 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.39 9.97 7.80 -40.82 -0.32 9.65 16 29 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 6.18 7.71 -40.82 -0.31 5.86 16 38 H 0.16 2.15 8.06 -52.49 -0.42 1.72 16 39 H 0.18 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -29.71 353.76 -10.35 -40.06 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.22 Total: 12.48 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.83 Total: -7.45 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.19 Total: -55.17 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.38 Total: 0.77 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.51 Total: -2.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.71 -10.35 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085352083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.206 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds