Wall clock time and date at job start Tue Mar 31 2020 15:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 C 1.53003 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47087 * 59.99958 * 13 12 10 15 15 C 1.52997 * 109.47114 * 300.00120 * 14 13 12 16 16 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 17 17 H 1.08995 * 109.47266 * 59.99845 * 16 10 9 18 18 N 1.46503 * 109.47247 * 299.99162 * 16 10 9 19 19 C 1.34774 * 119.99671 * 154.99774 * 18 16 10 20 20 O 1.21699 * 120.00534 * 0.02562 * 19 18 16 21 21 C 1.46573 * 119.99858 * 180.02562 * 19 18 16 22 22 C 1.36678 * 125.45488 * 180.02562 * 21 19 18 23 23 C 1.37530 * 113.28742 * 179.97438 * 22 21 19 24 24 Cl 1.73603 * 122.45873 * 180.02562 * 23 22 21 25 25 C 1.33872 * 115.07835 * 359.97438 * 23 22 21 26 26 S 1.70614 * 110.96247 * 359.73053 * 25 23 22 27 27 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 30 30 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 31 31 H 1.09000 * 109.47191 * 180.02562 * 13 12 10 32 32 H 1.08995 * 109.46928 * 299.99922 * 13 12 10 33 33 H 1.08995 * 109.47266 * 60.00171 * 14 13 12 34 34 H 1.09003 * 109.47147 * 180.02562 * 14 13 12 35 35 H 1.08997 * 109.47293 * 180.02562 * 15 14 13 36 36 H 1.09004 * 109.46812 * 300.00187 * 15 14 13 37 37 H 0.96998 * 119.99938 * 335.01407 * 18 16 10 38 38 H 1.07998 * 123.35084 * 359.97438 * 22 21 19 39 39 H 1.08004 * 124.51914 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 6 3.1868 -5.3682 -1.4208 14 6 2.3088 -6.4602 -0.8062 15 6 1.9444 -6.0741 0.6288 16 6 1.1804 -4.7490 0.6220 17 1 0.2700 -4.8582 0.0328 18 7 0.8316 -4.3794 1.9961 19 6 -0.2867 -4.8734 2.5635 20 8 -1.0064 -5.6267 1.9347 21 6 -0.6360 -4.5032 3.9380 22 6 -1.7382 -4.9368 4.6201 23 6 -1.8205 -4.4327 5.8970 24 17 -3.1242 -4.8287 6.9728 25 6 -0.8210 -3.6150 6.2498 26 16 0.3007 -3.4375 4.9765 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 1.5118 -4.1521 -2.0170 30 1 3.0474 -3.2648 -1.8657 31 1 3.4468 -5.6431 -2.4430 32 1 4.0972 -5.2594 -0.8314 33 1 1.3984 -6.5690 -1.3955 34 1 2.8536 -7.4043 -0.8008 35 1 1.3193 -6.8522 1.0668 36 1 2.8549 -5.9653 1.2181 37 1 1.4054 -3.7791 2.4974 38 1 -2.4713 -5.6084 4.1983 39 1 -0.7340 -3.1351 7.2134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085352083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:27 Heat of formation + Delta-G solvation = -32.713663 kcal Electronic energy + Delta-G solvation = -23414.879775 eV Core-core repulsion = 19894.687838 eV Total energy + Delta-G solvation = -3520.191937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20599 -39.57959 -38.74261 -37.00098 -35.80123 -35.21217 -32.98837 -31.52703 -30.26801 -29.22798 -26.26483 -25.57260 -23.71270 -22.57318 -22.02504 -21.14335 -20.42333 -19.62571 -19.02657 -17.62961 -17.05178 -16.96418 -16.44408 -16.19987 -15.65380 -15.40013 -15.06617 -14.84995 -14.63744 -14.59810 -14.26123 -14.09998 -13.84402 -13.61952 -13.50282 -12.90473 -12.75884 -12.46631 -12.37964 -12.26106 -12.17143 -12.05626 -12.00634 -11.88878 -11.65081 -11.42954 -11.27886 -11.05664 -10.82123 -10.20872 -9.94100 -9.51925 -8.98214 -7.88752 -5.18153 -0.69262 0.18608 0.47447 1.04265 1.45172 1.50567 1.52500 1.58411 2.01178 2.15912 2.59056 3.44346 3.61883 3.70863 3.82384 3.93044 4.10995 4.13493 4.26517 4.31794 4.43788 4.47829 4.53061 4.60188 4.70407 4.81925 4.89956 4.95939 5.01748 5.14062 5.25454 5.30536 5.31733 5.45647 5.52562 5.56945 5.66735 6.30354 6.42383 7.06737 7.37511 8.10521 8.35025 9.34035 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.004204 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.335018 B = 6658.298127 C = 8786.621911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.733 5.733 10 C 0.172 3.828 11 H 0.061 0.939 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.116 4.116 16 C 0.147 3.853 17 H 0.057 0.943 18 N -0.698 5.698 19 C 0.588 3.412 20 O -0.571 6.571 21 C -0.284 4.284 22 C -0.058 4.058 23 C -0.074 4.074 24 Cl -0.043 7.043 25 C -0.221 4.221 26 S 0.303 5.697 27 H 0.248 0.752 28 H 0.368 0.632 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.405 0.595 38 H 0.155 0.845 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -11.951 11.867 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.208 1.208 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.372 5.372 10 C 0.063 3.937 11 H 0.079 0.921 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.155 4.155 16 C 0.042 3.958 17 H 0.075 0.925 18 N -0.347 5.347 19 C 0.375 3.625 20 O -0.453 6.453 21 C -0.405 4.405 22 C -0.092 4.092 23 C -0.114 4.114 24 Cl -0.015 7.015 25 C -0.360 4.360 26 S 0.570 5.430 27 H 0.057 0.943 28 H 0.200 0.800 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.240 0.760 38 H 0.173 0.827 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 5.196 -11.549 11.350 17.006 hybrid contribution -1.828 0.722 0.266 1.983 sum 3.368 -10.827 11.615 16.232 Atomic orbital electron populations 1.69837 1.06693 1.25802 1.59662 1.25456 0.96063 1.00759 1.03993 0.85326 0.77166 0.79698 0.78238 1.20842 1.22987 1.19904 1.19546 0.91412 0.84785 1.40704 0.90169 1.42593 1.05173 1.00765 1.88644 1.20680 0.93828 0.84192 0.94967 0.92119 1.22089 0.99566 0.97522 0.97675 1.21521 0.98400 0.93284 1.01593 1.21476 0.99890 0.99134 0.94304 1.21820 1.00131 0.94804 0.98735 1.21273 0.98070 0.95303 0.81155 0.92478 1.45762 1.24567 1.48574 1.15754 1.17115 0.80740 0.79931 0.84742 1.90773 1.51918 1.38330 1.64266 1.24489 1.04719 1.11439 0.99828 1.20533 0.97055 0.99464 0.92109 1.19456 0.94862 1.04286 0.92800 1.98362 1.47018 1.93232 1.62867 1.25676 0.99066 1.03921 1.07377 1.83267 1.20570 1.39648 0.99496 0.94346 0.80039 0.94069 0.93014 0.90844 0.90825 0.92800 0.89349 0.92317 0.90058 0.75993 0.82726 0.77380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.11 13.06 21.65 0.28 -57.82 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.23 -12.03 9.93 84.03 0.83 -11.19 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.73 -34.69 4.95 -322.94 -1.60 -36.29 16 10 C 0.17 6.22 2.29 44.99 0.10 6.32 16 11 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 12 C -0.13 -4.21 5.51 30.59 0.17 -4.04 16 13 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 14 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 15 C -0.12 -3.01 5.49 30.58 0.17 -2.85 16 16 C 0.15 4.91 1.97 44.98 0.09 5.00 16 17 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 18 N -0.70 -22.98 4.90 -446.68 -2.19 -25.17 16 19 C 0.59 20.64 7.75 86.42 0.67 21.31 16 20 O -0.57 -23.59 16.50 -4.34 -0.07 -23.66 16 21 C -0.28 -8.30 6.45 24.08 0.16 -8.15 16 22 C -0.06 -1.57 9.89 21.74 0.22 -1.36 16 23 C -0.07 -1.69 6.25 21.11 0.13 -1.56 16 24 Cl -0.04 -0.89 29.10 -2.72 -0.08 -0.97 16 25 C -0.22 -4.24 10.77 66.83 0.72 -3.52 16 26 S 0.30 6.63 22.15 -56.49 -1.25 5.38 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 28 H 0.37 19.80 7.80 -92.71 -0.72 19.08 16 29 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.40 12.40 7.71 -92.71 -0.72 11.68 16 38 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -65.55 353.76 0.85 -64.70 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.35 Total: 35.64 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.08 Total: -8.17 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -3.51 Total: -119.28 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -1.25 Total: 5.38 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -65.55 0.85 -64.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085352083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.982 kcal (2) G-P(sol) polarization free energy of solvation -65.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds