Wall clock time and date at job start Tue Mar 31 2020 15:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99626 * 2 1 4 4 H 1.48491 * 109.47324 * 270.00195 * 3 2 1 5 5 H 1.48502 * 109.47082 * 30.00337 * 3 2 1 6 6 H 1.48496 * 109.46842 * 150.00053 * 3 2 1 7 7 C 1.38812 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99770 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 35.00117 * 10 9 7 12 12 C 1.52997 * 109.47007 * 275.00168 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 18 18 N 1.46496 * 109.47487 * 179.97438 * 16 15 14 19 19 C 1.34778 * 120.00072 * 275.00191 * 18 16 15 20 20 O 1.21648 * 119.99993 * 359.97438 * 19 18 16 21 21 C 1.47049 * 119.99604 * 179.97438 * 19 18 16 22 22 C 1.44500 * 123.49754 * 0.02562 * 21 19 18 23 23 C 1.32693 * 113.10240 * 179.97438 * 22 21 19 24 24 S 1.75491 * 110.62602 * 0.02562 * 23 22 21 25 25 C 1.36227 * 123.48897 * 179.70642 * 21 19 18 26 26 Cl 1.73603 * 124.60346 * 0.02562 * 25 21 19 27 27 H 0.97001 * 120.00668 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99906 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47194 * 59.99623 * 12 10 9 30 30 H 1.09002 * 109.46695 * 299.99637 * 12 10 9 31 31 H 1.08992 * 109.47063 * 299.99823 * 13 12 10 32 32 H 1.09004 * 109.46733 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 34 34 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 35 35 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 37 37 H 0.97007 * 119.99693 * 95.00333 * 18 16 15 38 38 H 1.08006 * 123.44760 * 359.97438 * 22 21 19 39 39 H 1.07999 * 124.68471 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5889 12 6 2.4222 -4.0355 -1.4375 13 6 3.1868 -5.3608 -1.4375 14 6 2.3091 -6.4559 -0.8282 15 6 1.9452 -6.0772 0.6088 16 6 1.1807 -4.7519 0.6089 17 1 0.2700 -4.8578 0.0194 18 7 0.8317 -4.3895 1.9848 19 6 -0.2868 -4.8862 2.5494 20 8 -1.0068 -5.6350 1.9164 21 6 -0.6368 -4.5228 3.9307 22 6 0.1623 -3.6407 4.7501 23 6 -0.3450 -3.4539 5.9619 24 16 -1.8363 -4.3588 6.1540 25 6 -1.7512 -4.9780 4.5683 26 17 -2.9231 -6.0471 3.8631 27 1 -0.4851 0.8400 0.0004 28 1 0.3557 -2.3881 0.0002 29 1 3.0470 -3.2551 -1.8718 30 1 1.5115 -4.1418 -2.0269 31 1 4.0974 -5.2549 -0.8480 32 1 3.4457 -5.6308 -2.4614 33 1 1.3984 -6.5618 -1.4178 34 1 2.8540 -7.4000 -0.8278 35 1 1.3203 -6.8575 1.0432 36 1 2.8559 -5.9713 1.1984 37 1 1.4056 -3.7920 2.4894 38 1 1.0787 -3.1806 4.4109 39 1 0.0985 -2.8310 6.7245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085353538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:49 Heat of formation + Delta-G solvation = -10.310038 kcal Electronic energy + Delta-G solvation = -23740.927112 eV Core-core repulsion = 20221.706669 eV Total energy + Delta-G solvation = -3519.220443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.87686 -38.17549 -36.86507 -36.33678 -34.03480 -33.67906 -31.14357 -29.79932 -29.21256 -27.75179 -24.86947 -23.70234 -22.19891 -21.16844 -21.02224 -19.78817 -18.99587 -18.39234 -17.27790 -16.59217 -15.69338 -15.22209 -14.81211 -14.50312 -14.02115 -13.97971 -13.83900 -13.58511 -13.41781 -13.21179 -13.01511 -12.85898 -12.63340 -12.08953 -12.06694 -11.56216 -11.23807 -11.08630 -10.93123 -10.92190 -10.80594 -10.74458 -10.54780 -10.31393 -10.17564 -9.74838 -9.63909 -9.44640 -8.92806 -8.89106 -8.69269 -8.43597 -6.99287 -5.78573 -3.08509 0.57202 0.95956 1.63428 1.96137 2.20424 3.39965 3.45258 3.47297 3.54924 3.66435 4.54359 4.70483 5.02860 5.07517 5.12793 5.20380 5.32191 5.52232 5.53610 5.66010 5.73536 5.82822 5.84360 5.91308 5.96834 5.99556 6.03697 6.13095 6.34735 6.46786 6.50241 6.52602 6.59584 6.87010 6.91578 7.10025 7.66294 7.93588 8.38273 8.59884 9.50063 10.06932 10.42196 11.43182 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.004592 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.480822 B = 6095.874272 C = 8054.163676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.143 3.857 17 H 0.085 0.915 18 N -0.699 5.699 19 C 0.574 3.426 20 O -0.531 6.531 21 C -0.143 4.143 22 C -0.094 4.094 23 C -0.226 4.226 24 S 0.207 5.793 25 C -0.125 4.125 26 Cl 0.016 6.984 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.159 0.841 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 -12.015 11.299 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.037 3.963 17 H 0.103 0.897 18 N -0.348 5.348 19 C 0.358 3.642 20 O -0.409 6.409 21 C -0.162 4.162 22 C -0.123 4.123 23 C -0.362 4.362 24 S 0.470 5.530 25 C -0.272 4.272 26 Cl 0.045 6.955 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.237 0.763 38 H 0.176 0.824 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.563 -12.640 11.976 17.421 hybrid contribution 1.331 1.512 -1.122 2.305 sum 0.768 -11.128 10.854 15.564 Atomic orbital electron populations 1.69674 1.05062 1.25616 1.57229 1.24731 0.95415 0.97568 1.02932 0.86251 0.78603 0.84119 0.77537 1.21778 1.21878 1.20823 1.19189 0.90873 0.84011 1.43139 0.91233 1.42420 1.05833 0.99445 1.88522 1.20463 0.93874 0.85795 0.93604 0.93211 1.22216 0.99959 0.95509 0.99689 1.21581 0.98512 0.95700 0.99947 1.21470 0.99903 0.97986 0.95799 1.21871 0.99979 0.97292 0.97133 1.21310 0.99091 0.93994 0.81872 0.89671 1.45731 1.24754 1.48936 1.15360 1.17335 0.81296 0.80733 0.84816 1.90813 1.50512 1.36309 1.63284 1.20428 0.96026 1.02676 0.97029 1.21214 1.00931 0.97613 0.92557 1.25478 1.00565 1.07822 1.02296 1.83053 1.22537 1.41268 1.06099 1.25196 0.97627 1.03556 1.00776 1.98400 1.53622 1.60725 1.82771 0.93517 0.78094 0.91618 0.92446 0.92408 0.92714 0.91954 0.92423 0.91876 0.92082 0.76333 0.82379 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -17.07 4.95 -53.43 -0.26 -17.34 16 10 C 0.17 3.23 2.30 -67.93 -0.16 3.07 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.28 5.50 -26.73 -0.15 -2.43 16 13 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 15 C -0.12 -1.76 5.49 -26.73 -0.15 -1.91 16 16 C 0.14 2.42 1.97 -67.93 -0.13 2.29 16 17 H 0.09 1.67 7.57 -51.93 -0.39 1.27 16 18 N -0.70 -11.59 4.89 -55.00 -0.27 -11.86 16 19 C 0.57 10.13 7.75 -12.69 -0.10 10.03 16 20 O -0.53 -10.67 14.57 5.24 0.08 -10.60 16 21 C -0.14 -2.18 5.98 -104.58 -0.63 -2.80 16 22 C -0.09 -1.17 9.90 -39.01 -0.39 -1.56 16 23 C -0.23 -2.31 11.11 28.84 0.32 -1.99 16 24 S 0.21 2.17 23.02 -107.50 -2.47 -0.31 16 25 C -0.12 -1.78 6.87 30.01 0.21 -1.57 16 26 Cl 0.02 0.23 27.20 -51.86 -1.41 -1.18 16 27 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.39 10.16 7.80 -40.82 -0.32 9.84 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.40 6.22 7.15 -40.82 -0.29 5.93 16 38 H 0.16 1.76 7.10 -52.48 -0.37 1.39 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -30.75 349.75 -10.25 -40.99 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.15 Total: 12.19 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.73 Total: -7.14 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.19 Total: -55.95 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.47 Total: -0.31 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.41 Total: -1.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.75 -10.25 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085353538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.684 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds