Wall clock time and date at job start Tue Mar 31 2020 15:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99626 * 2 1 4 4 H 1.48491 * 109.47324 * 270.00195 * 3 2 1 5 5 H 1.48502 * 109.47082 * 30.00337 * 3 2 1 6 6 H 1.48496 * 109.46842 * 150.00053 * 3 2 1 7 7 C 1.38812 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99770 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 35.00117 * 10 9 7 12 12 C 1.52997 * 109.47007 * 275.00168 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47233 * 60.00194 * 13 12 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 18 18 N 1.46496 * 109.47487 * 179.97438 * 16 15 14 19 19 C 1.34778 * 120.00072 * 275.00191 * 18 16 15 20 20 O 1.21648 * 119.99993 * 359.97438 * 19 18 16 21 21 C 1.47049 * 119.99604 * 179.97438 * 19 18 16 22 22 C 1.44500 * 123.49754 * 0.02562 * 21 19 18 23 23 C 1.32693 * 113.10240 * 179.97438 * 22 21 19 24 24 S 1.75491 * 110.62602 * 0.02562 * 23 22 21 25 25 C 1.36227 * 123.48897 * 179.70642 * 21 19 18 26 26 Cl 1.73603 * 124.60346 * 0.02562 * 25 21 19 27 27 H 0.97001 * 120.00668 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99906 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47194 * 59.99623 * 12 10 9 30 30 H 1.09002 * 109.46695 * 299.99637 * 12 10 9 31 31 H 1.08992 * 109.47063 * 299.99823 * 13 12 10 32 32 H 1.09004 * 109.46733 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 34 34 H 1.09001 * 109.47194 * 180.02562 * 14 13 12 35 35 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 37 37 H 0.97007 * 119.99693 * 95.00333 * 18 16 15 38 38 H 1.08006 * 123.44760 * 359.97438 * 22 21 19 39 39 H 1.07999 * 124.68471 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5504 0.5889 12 6 2.4222 -4.0355 -1.4375 13 6 3.1868 -5.3608 -1.4375 14 6 2.3091 -6.4559 -0.8282 15 6 1.9452 -6.0772 0.6088 16 6 1.1807 -4.7519 0.6089 17 1 0.2700 -4.8578 0.0194 18 7 0.8317 -4.3895 1.9848 19 6 -0.2868 -4.8862 2.5494 20 8 -1.0068 -5.6350 1.9164 21 6 -0.6368 -4.5228 3.9307 22 6 0.1623 -3.6407 4.7501 23 6 -0.3450 -3.4539 5.9619 24 16 -1.8363 -4.3588 6.1540 25 6 -1.7512 -4.9780 4.5683 26 17 -2.9231 -6.0471 3.8631 27 1 -0.4851 0.8400 0.0004 28 1 0.3557 -2.3881 0.0002 29 1 3.0470 -3.2551 -1.8718 30 1 1.5115 -4.1418 -2.0269 31 1 4.0974 -5.2549 -0.8480 32 1 3.4457 -5.6308 -2.4614 33 1 1.3984 -6.5618 -1.4178 34 1 2.8540 -7.4000 -0.8278 35 1 1.3203 -6.8575 1.0432 36 1 2.8559 -5.9713 1.1984 37 1 1.4056 -3.7920 2.4894 38 1 1.0787 -3.1806 4.4109 39 1 0.0985 -2.8310 6.7245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085353538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:48 Heat of formation + Delta-G solvation = -29.383122 kcal Electronic energy + Delta-G solvation = -23741.754183 eV Core-core repulsion = 20221.706669 eV Total energy + Delta-G solvation = -3520.047514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20070 -39.46213 -38.03612 -37.40753 -35.79794 -35.06165 -32.97822 -30.93902 -30.38388 -29.35664 -26.10018 -25.50420 -23.39932 -22.50521 -22.30123 -21.09081 -20.21852 -19.46624 -19.09526 -17.89963 -16.99282 -16.80364 -16.12291 -16.01489 -15.42971 -15.34926 -14.94570 -14.85645 -14.61267 -14.51635 -14.41846 -14.04881 -13.97596 -13.53777 -13.50451 -12.91290 -12.78969 -12.60252 -12.23687 -12.17490 -12.12510 -12.03113 -12.02004 -11.97438 -11.61743 -11.42439 -11.10182 -10.96757 -10.70141 -10.01960 -9.81332 -9.47817 -8.97711 -7.88887 -5.18090 -0.47459 0.01302 0.69751 0.94721 1.18659 1.49398 1.50903 1.58766 2.25368 2.38958 2.58619 3.44371 3.67833 3.74170 3.84394 3.99919 4.11573 4.21552 4.29384 4.33478 4.45209 4.51489 4.60408 4.70409 4.72549 4.95049 4.97177 5.03119 5.09817 5.18240 5.25361 5.30838 5.32263 5.48015 5.54637 5.58586 5.70176 6.30181 6.60682 7.26530 7.37031 8.10846 8.35424 9.34134 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.004592 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.480822 B = 6095.874272 C = 8054.163676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.294 1.294 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.150 3.850 17 H 0.051 0.949 18 N -0.695 5.695 19 C 0.566 3.434 20 O -0.566 6.566 21 C -0.169 4.169 22 C -0.114 4.114 23 C -0.211 4.211 24 S 0.275 5.725 25 C -0.152 4.152 26 Cl -0.001 7.001 27 H 0.247 0.753 28 H 0.368 0.632 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.407 0.593 38 H 0.167 0.833 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -12.318 13.015 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.222 1.222 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.065 3.935 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.045 3.955 17 H 0.070 0.930 18 N -0.344 5.344 19 C 0.352 3.648 20 O -0.447 6.447 21 C -0.189 4.189 22 C -0.142 4.142 23 C -0.346 4.346 24 S 0.539 5.461 25 C -0.299 4.299 26 Cl 0.028 6.972 27 H 0.056 0.944 28 H 0.199 0.801 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.243 0.757 38 H 0.184 0.816 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.686 -12.974 13.705 18.948 hybrid contribution 0.640 1.559 -1.590 2.317 sum 2.326 -11.415 12.115 16.807 Atomic orbital electron populations 1.69852 1.06735 1.25664 1.59858 1.25480 0.96086 1.00838 1.04164 0.85222 0.77908 0.80013 0.77094 1.22175 1.22815 1.18903 1.19580 0.91389 0.84797 1.40347 0.90177 1.42590 1.05122 1.00763 1.88540 1.20666 0.93832 0.84235 0.94816 0.92173 1.22090 0.99457 0.97496 0.97829 1.21512 0.98378 0.93268 1.01542 1.21476 0.99795 0.99107 0.94441 1.21799 1.00013 0.94992 0.98481 1.21170 0.97648 0.95032 0.81694 0.93025 1.45712 1.24775 1.48877 1.15077 1.17796 0.80908 0.80196 0.85880 1.90778 1.51472 1.37954 1.64470 1.20458 0.97496 1.04641 0.96283 1.21254 1.01556 0.98166 0.93191 1.25977 0.99920 1.06654 1.02070 1.82838 1.21628 1.39206 1.02398 1.25613 0.97386 1.03916 1.02987 1.98386 1.54015 1.61325 1.83445 0.94419 0.80133 0.93049 0.94255 0.90812 0.90895 0.92984 0.89480 0.92646 0.90206 0.75689 0.81604 0.77046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.01 13.06 21.65 0.28 -58.72 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.23 -12.01 9.93 84.03 0.83 -11.18 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.73 -35.26 4.95 -322.94 -1.60 -36.86 16 10 C 0.17 6.43 2.30 44.99 0.10 6.53 16 11 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 12 C -0.13 -4.35 5.50 30.59 0.17 -4.18 16 13 C -0.11 -2.69 5.92 30.60 0.18 -2.51 16 14 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 15 C -0.11 -3.12 5.49 30.59 0.17 -2.95 16 16 C 0.15 5.18 1.97 44.99 0.09 5.27 16 17 H 0.05 2.14 7.57 -2.39 -0.02 2.12 16 18 N -0.70 -23.52 4.89 -446.16 -2.18 -25.70 16 19 C 0.57 20.66 7.75 86.55 0.67 21.33 16 20 O -0.57 -23.88 14.57 -4.18 -0.06 -23.94 16 21 C -0.17 -5.17 5.98 -19.84 -0.12 -5.29 16 22 C -0.11 -2.68 9.90 22.70 0.22 -2.45 16 23 C -0.21 -3.69 11.11 66.65 0.74 -2.95 16 24 S 0.28 5.13 23.02 -56.49 -1.30 3.83 16 25 C -0.15 -4.30 6.87 67.35 0.46 -3.84 16 26 Cl 0.00 -0.02 27.20 -2.72 -0.07 -0.09 16 27 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.37 20.21 7.80 -92.71 -0.72 19.49 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.41 12.64 7.15 -92.70 -0.66 11.98 16 38 H 0.17 3.50 7.10 -2.91 -0.02 3.48 16 39 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -68.89 349.75 0.97 -67.92 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -0.30 Total: 34.95 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.17 Total: -8.30 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -3.50 Total: -121.28 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.30 Total: 3.83 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.07 Total: -0.09 kcal Total: -68.89 0.97 -67.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085353538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.534 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds