Wall clock time and date at job start Tue Mar 31 2020 15:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00126 * 3 2 1 5 5 H 1.48499 * 109.46979 * 29.99893 * 3 2 1 6 6 H 1.48499 * 109.47115 * 150.00247 * 3 2 1 7 7 C 1.38810 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99430 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99965 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47579 * 35.00204 * 10 9 7 12 12 C 1.53002 * 109.47207 * 274.99793 * 10 9 7 13 13 C 1.53002 * 109.47453 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46614 * 60.00227 * 13 12 10 15 15 C 1.53001 * 109.47184 * 299.99676 * 14 13 12 16 16 C 1.53002 * 109.47080 * 60.00610 * 15 14 13 17 17 H 1.09006 * 109.47142 * 59.99474 * 16 15 14 18 18 N 1.46497 * 109.47223 * 179.97438 * 16 15 14 19 19 C 1.34772 * 119.99922 * 274.99491 * 18 16 15 20 20 O 1.21717 * 120.00322 * 0.02562 * 19 18 16 21 21 C 1.46469 * 120.00121 * 180.02562 * 19 18 16 22 22 C 1.36690 * 125.44848 * 180.02562 * 21 19 18 23 23 C 1.37409 * 113.31547 * 180.02562 * 22 21 19 24 24 C 1.34016 * 115.07157 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 124.52744 * 180.26596 * 24 23 22 26 26 S 1.70618 * 110.93576 * 359.97438 * 24 23 22 27 27 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00047 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47251 * 60.00049 * 12 10 9 30 30 H 1.08998 * 109.47186 * 300.00651 * 12 10 9 31 31 H 1.09001 * 109.46715 * 300.00360 * 13 12 10 32 32 H 1.08994 * 109.47174 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.46588 * 180.02562 * 14 13 12 34 34 H 1.08992 * 109.47341 * 60.00317 * 14 13 12 35 35 H 1.09001 * 109.47667 * 300.00799 * 15 14 13 36 36 H 1.08997 * 109.47094 * 180.02562 * 15 14 13 37 37 H 0.97004 * 119.99875 * 95.00288 * 18 16 15 38 38 H 1.08005 * 123.34437 * 0.02562 * 22 21 19 39 39 H 1.07997 * 122.45961 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 0.5889 12 6 2.4219 -4.0356 -1.4376 13 6 3.1863 -5.3610 -1.4377 14 6 2.3085 -6.4560 -0.8283 15 6 1.9447 -6.0772 0.6088 16 6 1.1803 -4.7519 0.6089 17 1 0.2695 -4.8576 0.0193 18 7 0.8314 -4.3895 1.9848 19 6 -0.2871 -4.8860 2.5494 20 8 -1.0072 -5.6358 1.9164 21 6 -0.6363 -4.5232 3.9249 22 6 -1.7388 -4.9602 4.6044 23 6 -1.8224 -4.4628 5.8826 24 6 -0.8228 -3.6448 6.2401 25 17 -0.6806 -2.8863 7.7952 26 16 0.2953 -3.4551 4.9655 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 3.0468 -3.2553 -1.8719 30 1 1.5112 -4.1418 -2.0270 31 1 4.0970 -5.2551 -0.8481 32 1 3.4451 -5.6311 -2.4614 33 1 2.8533 -7.4001 -0.8279 34 1 1.3979 -6.5618 -1.4178 35 1 2.8554 -5.9713 1.1984 36 1 1.3198 -6.8575 1.0431 37 1 1.4054 -3.7920 2.4894 38 1 -2.4716 -5.6299 4.1790 39 1 -2.6340 -4.7127 6.5499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085413769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:30 Heat of formation + Delta-G solvation = -13.544332 kcal Electronic energy + Delta-G solvation = -23420.946162 eV Core-core repulsion = 19901.585470 eV Total energy + Delta-G solvation = -3519.360692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.87274 -38.33112 -37.52397 -36.57690 -34.08110 -33.82474 -31.18104 -30.27275 -28.91774 -27.65192 -25.00868 -23.74864 -22.57610 -21.16544 -20.78604 -19.95085 -19.36314 -18.41791 -17.18108 -16.35787 -15.92373 -15.58191 -14.92151 -14.83469 -14.14122 -14.02029 -13.78682 -13.64850 -13.47889 -13.41164 -13.01289 -12.86811 -12.57786 -12.22773 -12.10611 -11.62169 -11.46868 -11.11364 -10.94522 -10.93981 -10.86748 -10.78316 -10.60213 -10.35722 -10.19135 -9.89011 -9.71412 -9.66648 -8.95924 -8.89196 -8.75902 -8.61651 -7.02137 -5.80467 -3.10729 0.29435 0.90722 1.61530 1.99339 2.20744 3.29383 3.39591 3.41488 3.45154 3.47135 4.52945 4.86988 5.00761 5.03459 5.12217 5.19677 5.27212 5.48081 5.49980 5.66633 5.68403 5.76903 5.85722 5.90434 5.93277 5.94910 6.06756 6.09327 6.28263 6.42679 6.44149 6.45580 6.55211 6.78202 6.84949 7.03445 7.65039 7.74076 8.36099 8.38388 9.48291 10.03857 10.39154 11.41319 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004592 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.183090 B = 6096.434878 C = 8434.620996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.172 3.828 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.141 3.859 17 H 0.088 0.912 18 N -0.701 5.701 19 C 0.590 3.410 20 O -0.534 6.534 21 C -0.248 4.248 22 C -0.058 4.058 23 C -0.135 4.135 24 C -0.176 4.176 25 Cl -0.014 7.014 26 S 0.270 5.730 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.400 0.600 38 H 0.160 0.840 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 -11.788 10.596 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.164 4.164 16 C 0.036 3.964 17 H 0.106 0.894 18 N -0.349 5.349 19 C 0.376 3.624 20 O -0.413 6.413 21 C -0.369 4.369 22 C -0.091 4.091 23 C -0.168 4.168 24 C -0.322 4.322 25 Cl 0.015 6.985 26 S 0.537 5.463 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.178 0.822 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.711 -11.236 10.138 15.375 hybrid contribution -1.039 0.709 0.652 1.417 sum 1.672 -10.527 10.790 15.167 Atomic orbital electron populations 1.69672 1.05078 1.25686 1.57136 1.24732 0.95430 0.97600 1.02792 0.86252 0.78666 0.84065 0.77546 1.21746 1.21817 1.20757 1.19188 0.90905 0.83948 1.43309 0.91168 1.42428 1.05833 0.99472 1.88583 1.20475 0.93882 0.85732 0.93732 0.93098 1.22217 1.00021 0.95570 0.99551 1.21588 0.98533 0.95657 1.00027 1.21470 0.99966 0.98069 0.95640 1.21884 1.00048 0.97096 0.97351 1.21388 0.99343 0.94270 0.81390 0.89421 1.45806 1.24548 1.48785 1.15796 1.16795 0.81205 0.80514 0.83932 1.90810 1.50940 1.36801 1.62762 1.24891 1.03364 1.08623 1.00058 1.20581 0.96802 0.99438 0.92298 1.20022 0.99999 0.99381 0.97395 1.25041 1.04894 1.07023 0.95264 1.98374 1.97484 1.79806 1.22857 1.83473 1.21552 1.41867 0.99440 0.93469 0.78104 0.91508 0.92386 0.92353 0.92623 0.92305 0.91892 0.91937 0.91799 0.76511 0.82219 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.71 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.33 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -16.96 4.95 -53.42 -0.26 -17.22 16 10 C 0.17 3.17 2.30 -67.93 -0.16 3.01 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.23 5.50 -26.73 -0.15 -2.38 16 13 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 15 C -0.12 -1.72 5.49 -26.73 -0.15 -1.87 16 16 C 0.14 2.35 1.97 -67.93 -0.13 2.21 16 17 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.70 -11.52 4.90 -55.18 -0.27 -11.79 16 19 C 0.59 10.06 7.74 -12.95 -0.10 9.96 16 20 O -0.53 -10.43 16.50 5.17 0.09 -10.35 16 21 C -0.25 -3.61 6.45 -36.83 -0.24 -3.85 16 22 C -0.06 -0.75 10.01 -40.44 -0.40 -1.15 16 23 C -0.13 -1.51 10.08 -41.37 -0.42 -1.93 16 24 C -0.18 -2.09 6.82 29.25 0.20 -1.89 16 25 Cl -0.01 -0.15 29.27 -51.86 -1.52 -1.66 16 26 S 0.27 3.44 22.15 -107.50 -2.38 1.06 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.39 10.02 7.80 -40.82 -0.32 9.70 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 6.31 7.71 -40.82 -0.31 6.00 16 38 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -29.75 353.89 -10.64 -40.39 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.22 Total: 12.14 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.11 Total: -8.01 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.19 Total: -55.58 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.38 Total: 1.06 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.75 -10.64 -40.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085413769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.842 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds