Wall clock time and date at job start Tue Mar 31 2020 15:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00126 * 3 2 1 5 5 H 1.48499 * 109.46979 * 29.99893 * 3 2 1 6 6 H 1.48499 * 109.47115 * 150.00247 * 3 2 1 7 7 C 1.38810 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99430 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99965 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47579 * 35.00204 * 10 9 7 12 12 C 1.53002 * 109.47207 * 274.99793 * 10 9 7 13 13 C 1.53002 * 109.47453 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46614 * 60.00227 * 13 12 10 15 15 C 1.53001 * 109.47184 * 299.99676 * 14 13 12 16 16 C 1.53002 * 109.47080 * 60.00610 * 15 14 13 17 17 H 1.09006 * 109.47142 * 59.99474 * 16 15 14 18 18 N 1.46497 * 109.47223 * 179.97438 * 16 15 14 19 19 C 1.34772 * 119.99922 * 274.99491 * 18 16 15 20 20 O 1.21717 * 120.00322 * 0.02562 * 19 18 16 21 21 C 1.46469 * 120.00121 * 180.02562 * 19 18 16 22 22 C 1.36690 * 125.44848 * 180.02562 * 21 19 18 23 23 C 1.37409 * 113.31547 * 180.02562 * 22 21 19 24 24 C 1.34016 * 115.07157 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 124.52744 * 180.26596 * 24 23 22 26 26 S 1.70618 * 110.93576 * 359.97438 * 24 23 22 27 27 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00047 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47251 * 60.00049 * 12 10 9 30 30 H 1.08998 * 109.47186 * 300.00651 * 12 10 9 31 31 H 1.09001 * 109.46715 * 300.00360 * 13 12 10 32 32 H 1.08994 * 109.47174 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.46588 * 180.02562 * 14 13 12 34 34 H 1.08992 * 109.47341 * 60.00317 * 14 13 12 35 35 H 1.09001 * 109.47667 * 300.00799 * 15 14 13 36 36 H 1.08997 * 109.47094 * 180.02562 * 15 14 13 37 37 H 0.97004 * 119.99875 * 95.00288 * 18 16 15 38 38 H 1.08005 * 123.34437 * 0.02562 * 22 21 19 39 39 H 1.07997 * 122.45961 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 0.5889 12 6 2.4219 -4.0356 -1.4376 13 6 3.1863 -5.3610 -1.4377 14 6 2.3085 -6.4560 -0.8283 15 6 1.9447 -6.0772 0.6088 16 6 1.1803 -4.7519 0.6089 17 1 0.2695 -4.8576 0.0193 18 7 0.8314 -4.3895 1.9848 19 6 -0.2871 -4.8860 2.5494 20 8 -1.0072 -5.6358 1.9164 21 6 -0.6363 -4.5232 3.9249 22 6 -1.7388 -4.9602 4.6044 23 6 -1.8224 -4.4628 5.8826 24 6 -0.8228 -3.6448 6.2401 25 17 -0.6806 -2.8863 7.7952 26 16 0.2953 -3.4551 4.9655 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 3.0468 -3.2553 -1.8719 30 1 1.5112 -4.1418 -2.0270 31 1 4.0970 -5.2551 -0.8481 32 1 3.4451 -5.6311 -2.4614 33 1 2.8533 -7.4001 -0.8279 34 1 1.3979 -6.5618 -1.4178 35 1 2.8554 -5.9713 1.1984 36 1 1.3198 -6.8575 1.0431 37 1 1.4054 -3.7920 2.4894 38 1 -2.4716 -5.6299 4.1790 39 1 -2.6340 -4.7127 6.5499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085413769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:30 Heat of formation + Delta-G solvation = -31.250995 kcal Electronic energy + Delta-G solvation = -23421.713981 eV Core-core repulsion = 19901.585470 eV Total energy + Delta-G solvation = -3520.128511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19710 -39.52187 -38.65455 -37.54900 -35.81172 -35.20521 -32.99606 -31.43459 -30.17304 -29.16420 -26.12042 -25.57905 -23.76682 -22.58708 -22.04742 -21.15790 -20.47984 -19.67179 -19.04100 -17.60500 -17.16445 -16.87830 -16.39535 -16.18084 -15.63942 -15.41019 -15.11868 -14.85722 -14.66835 -14.60849 -14.41393 -14.11612 -13.73629 -13.63351 -13.45750 -12.92157 -12.80484 -12.59743 -12.46381 -12.24983 -12.17411 -12.03079 -12.00993 -11.86455 -11.65433 -11.43252 -11.26864 -11.06186 -10.83629 -10.14151 -9.76350 -9.73805 -8.99167 -7.90177 -5.19298 -0.75437 -0.09261 0.60974 1.03212 1.19318 1.49150 1.49933 1.57972 2.02341 2.16216 2.57661 3.43167 3.63463 3.73527 3.84587 4.04042 4.13524 4.25853 4.27376 4.31412 4.43801 4.48798 4.59597 4.70008 4.73043 4.90973 4.95735 5.01686 5.11639 5.14627 5.25322 5.30250 5.31535 5.45515 5.52384 5.56013 5.66390 6.29308 6.41882 7.06242 7.36388 8.09474 8.33790 9.32804 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004592 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.183090 B = 6096.434878 C = 8434.620996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.072 4.072 3 Si 0.965 3.035 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.733 5.733 10 C 0.171 3.829 11 H 0.059 0.941 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.116 4.116 16 C 0.147 3.853 17 H 0.059 0.941 18 N -0.700 5.700 19 C 0.588 3.412 20 O -0.568 6.568 21 C -0.281 4.281 22 C -0.048 4.048 23 C -0.130 4.130 24 C -0.174 4.174 25 Cl 0.001 6.999 26 S 0.271 5.729 27 H 0.248 0.752 28 H 0.369 0.631 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.403 0.597 38 H 0.167 0.833 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -12.772 11.749 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.372 5.372 10 C 0.062 3.938 11 H 0.077 0.923 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.155 4.155 16 C 0.042 3.958 17 H 0.077 0.923 18 N -0.349 5.349 19 C 0.375 3.625 20 O -0.450 6.450 21 C -0.402 4.402 22 C -0.082 4.082 23 C -0.163 4.163 24 C -0.321 4.321 25 Cl 0.030 6.970 26 S 0.538 5.462 27 H 0.056 0.944 28 H 0.200 0.800 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.185 0.815 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.312 -12.249 11.296 17.212 hybrid contribution -1.519 0.970 0.356 1.837 sum 2.793 -11.279 11.652 16.456 Atomic orbital electron populations 1.69839 1.06654 1.25710 1.59753 1.25460 0.96106 1.00765 1.04084 0.85261 0.77941 0.80129 0.77167 1.22000 1.22792 1.19012 1.19568 0.91394 0.84791 1.40481 0.90215 1.42599 1.05197 1.00776 1.88614 1.20691 0.93812 0.84225 0.95027 0.92314 1.22085 0.99602 0.97539 0.97591 1.21524 0.98390 0.93287 1.01620 1.21476 0.99923 0.99107 0.94269 1.21829 1.00090 0.94825 0.98740 1.21283 0.98100 0.95294 0.81126 0.92303 1.45819 1.24650 1.48755 1.15635 1.17118 0.80706 0.79900 0.84796 1.90776 1.51845 1.38424 1.63956 1.24728 1.05096 1.10852 0.99501 1.20828 0.96016 0.98642 0.92693 1.20247 1.00463 0.98554 0.96988 1.25182 1.04570 1.06754 0.95552 1.98384 1.97414 1.79528 1.21710 1.83403 1.21693 1.41530 0.99551 0.94350 0.80004 0.93052 0.93970 0.90926 0.90790 0.89330 0.92679 0.90228 0.92177 0.76177 0.81514 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.00 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.23 -12.06 9.93 84.03 0.83 -11.23 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -35.07 4.95 -322.94 -1.60 -36.67 16 10 C 0.17 6.27 2.30 44.99 0.10 6.37 16 11 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 12 C -0.13 -4.22 5.50 30.60 0.17 -4.06 16 13 C -0.11 -2.63 5.92 30.60 0.18 -2.45 16 14 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 15 C -0.12 -3.03 5.49 30.60 0.17 -2.86 16 16 C 0.15 4.94 1.97 44.99 0.09 5.03 16 17 H 0.06 2.33 7.58 -2.38 -0.02 2.31 16 18 N -0.70 -23.41 4.90 -446.69 -2.19 -25.60 16 19 C 0.59 20.51 7.74 86.39 0.67 21.18 16 20 O -0.57 -22.91 16.50 -4.40 -0.07 -22.98 16 21 C -0.28 -8.18 6.45 24.05 0.16 -8.02 16 22 C -0.05 -1.19 10.01 21.71 0.22 -0.97 16 23 C -0.13 -2.66 10.08 21.11 0.21 -2.44 16 24 C -0.17 -3.85 6.82 66.86 0.46 -3.39 16 25 Cl 0.00 0.02 29.27 -2.72 -0.08 -0.06 16 26 S 0.27 6.75 22.15 -56.49 -1.25 5.50 16 27 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 28 H 0.37 19.95 7.80 -92.71 -0.72 19.23 16 29 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.40 12.84 7.71 -92.71 -0.71 12.13 16 38 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -65.12 353.89 0.67 -64.46 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.35 Total: 35.31 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 3.90 Total: -8.67 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -3.51 Total: -120.57 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.07 Total: -22.98 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 6.75 SS G_CDS: -1.25 Total: 5.50 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.06 kcal Total: -65.12 0.67 -64.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085413769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.205 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds