Wall clock time and date at job start Tue Mar 31 2020 15:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48494 * 109.47211 * 270.00223 * 3 2 1 5 5 H 1.48494 * 109.46764 * 30.00511 * 3 2 1 6 6 H 1.48499 * 109.46887 * 150.00477 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21719 * 119.99859 * 359.97438 * 18 17 16 20 20 C 1.46443 * 119.99921 * 179.97438 * 18 17 16 21 21 S 1.75820 * 125.45954 * 359.69388 * 20 18 17 22 22 C 1.70614 * 91.58603 * 179.97438 * 21 20 18 23 23 C 1.33766 * 110.99453 * 0.30802 * 22 21 20 24 24 C 1.36784 * 125.45819 * 179.97438 * 20 18 17 25 25 Cl 1.73597 * 123.38680 * 359.94394 * 24 20 18 26 26 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 27 27 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 29 29 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 30 30 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 31 31 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 32 32 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 33 33 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 34 34 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 35 35 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 36 36 H 1.07993 * 124.50001 * 180.02562 * 22 21 20 37 37 H 1.08004 * 122.45096 * 179.74151 * 23 22 21 38 38 H 1.09002 * 110.48438 * 261.59441 * 26 10 9 39 39 H 1.08998 * 110.48431 * 24.10269 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9716 -3.5602 0.5860 12 6 2.3989 -4.0685 -1.4434 13 6 1.7095 -5.4266 -1.6887 14 6 1.5296 -6.0230 -0.2706 15 1 2.4573 -6.4768 0.0781 16 6 0.3860 -7.0392 -0.2508 17 7 0.7500 -8.1999 -1.0673 18 6 -0.1102 -9.2294 -1.1964 19 8 -1.1892 -9.1950 -0.6343 20 6 0.2535 -10.3894 -2.0130 21 16 1.7644 -10.5858 -2.8904 22 6 1.2813 -12.1143 -3.4747 23 6 0.0595 -12.4321 -3.0325 24 6 -0.5301 -11.4913 -2.2196 25 17 -2.1101 -11.6836 -1.5265 26 6 1.1732 -4.7790 0.5806 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 3.4781 -4.1717 -1.5572 30 1 2.0192 -3.3251 -2.1443 31 1 0.7409 -5.2818 -2.1673 32 1 2.3436 -6.0721 -2.2965 33 1 0.2025 -7.3596 0.7748 34 1 -0.5158 -6.5794 -0.6547 35 1 1.6102 -8.2275 -1.5149 36 1 1.8804 -12.7398 -4.1197 37 1 -0.4284 -13.3594 -3.2942 38 1 1.4161 -4.9519 1.6291 39 1 0.1181 -4.5284 0.4707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086703386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:24 Heat of formation + Delta-G solvation = -7.200229 kcal Electronic energy + Delta-G solvation = -22349.723625 eV Core-core repulsion = 18830.638034 eV Total energy + Delta-G solvation = -3519.085591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.02476 -38.50769 -37.84955 -36.35968 -34.98084 -33.37021 -31.07218 -30.24352 -28.91547 -27.30190 -25.55149 -24.11918 -23.08138 -21.62539 -20.33896 -19.74323 -19.19029 -18.80163 -17.08438 -16.83217 -16.10219 -15.85380 -15.49077 -15.06168 -14.73617 -14.09166 -14.02322 -13.90826 -13.64593 -13.31958 -13.22760 -13.13036 -12.58039 -12.19404 -11.81303 -11.72703 -11.58901 -11.30275 -11.12754 -10.80610 -10.76910 -10.61637 -10.54480 -10.33988 -10.13385 -10.11452 -9.81495 -9.62397 -9.45233 -9.13037 -8.95089 -8.88101 -6.93346 -5.75431 -3.03949 -0.06668 0.73126 1.21523 1.77219 2.11937 2.90246 2.92378 3.43740 3.48887 3.50696 4.34251 4.56134 4.59541 4.64461 4.83887 4.89751 5.06258 5.16226 5.41856 5.48048 5.51379 5.55024 5.67335 5.71777 5.87828 5.98525 6.03671 6.07073 6.16865 6.28837 6.32145 6.45853 6.63449 6.71028 6.89706 7.14978 7.24879 7.71835 7.96375 8.43764 9.54367 10.13811 10.47629 11.47244 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.002166 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.534498 B =12922.655317 C =13585.297423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.723 5.723 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.106 4.106 15 H 0.079 0.921 16 C 0.129 3.871 17 N -0.721 5.721 18 C 0.582 3.418 19 O -0.509 6.509 20 C -0.263 4.263 21 S 0.243 5.757 22 C -0.224 4.224 23 C -0.143 4.143 24 C 0.016 3.984 25 Cl -0.013 7.013 26 C -0.118 4.118 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.396 0.604 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.063 0.937 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -28.335 -7.255 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.066 0.934 12 C -0.186 4.186 13 C -0.153 4.153 14 C -0.125 4.125 15 H 0.097 0.903 16 C 0.006 3.994 17 N -0.372 5.372 18 C 0.367 3.633 19 O -0.386 6.386 20 C -0.385 4.385 21 S 0.510 5.490 22 C -0.362 4.362 23 C -0.174 4.174 24 C -0.027 4.027 25 Cl 0.016 6.984 26 C -0.157 4.157 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.230 0.770 36 H 0.196 0.804 37 H 0.173 0.827 38 H 0.082 0.918 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.639 -27.252 -6.929 28.499 hybrid contribution -0.755 -0.136 -0.229 0.801 sum 3.884 -27.388 -7.158 28.573 Atomic orbital electron populations 1.69657 1.05093 1.25629 1.57749 1.24745 0.95503 0.97678 1.03128 0.86211 0.78650 0.83984 0.77476 1.21784 1.21812 1.20804 1.19250 0.90977 0.84213 1.42530 0.91245 1.42544 1.05706 0.99756 1.88349 1.20812 0.94122 0.85997 0.92582 0.93355 1.22992 0.98694 0.95728 1.01235 1.22400 1.00688 0.97121 0.95117 1.22368 0.97276 0.95159 0.97734 0.90261 1.21520 0.98385 0.84430 0.95021 1.45897 1.19855 1.19231 1.52243 1.16756 0.84647 0.81229 0.80651 1.90908 1.21802 1.79395 1.46493 1.24626 1.01122 1.01407 1.11335 1.83176 1.13610 1.12127 1.40133 1.25217 1.00972 1.02643 1.07329 1.19790 0.95585 1.01560 1.00509 1.20377 0.90022 0.94100 0.98206 1.98416 1.20723 1.96936 1.82341 1.22605 1.01304 0.93413 0.98342 0.93524 0.78231 0.93349 0.90904 0.91727 0.92978 0.91125 0.90755 0.76972 0.80431 0.82747 0.91808 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.85 5.04 -52.34 -0.26 -18.11 16 10 C 0.18 3.35 3.55 -66.81 -0.24 3.11 16 11 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 12 C -0.15 -2.46 6.59 -25.61 -0.17 -2.63 16 13 C -0.12 -1.52 5.97 -25.07 -0.15 -1.67 16 14 C -0.11 -1.30 2.96 -88.63 -0.26 -1.56 16 15 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.13 1.57 5.11 -4.04 -0.02 1.55 16 17 N -0.72 -7.81 5.40 -61.69 -0.33 -8.14 16 18 C 0.58 7.39 7.78 -12.96 -0.10 7.29 16 19 O -0.51 -8.21 15.09 5.17 0.08 -8.13 16 20 C -0.26 -2.71 6.45 -36.81 -0.24 -2.94 16 21 S 0.24 1.54 22.15 -107.50 -2.38 -0.84 16 22 C -0.22 -1.22 10.92 29.16 0.32 -0.90 16 23 C -0.14 -1.02 10.06 -41.38 -0.42 -1.44 16 24 C 0.02 0.16 6.40 -40.34 -0.26 -0.10 16 25 Cl -0.01 -0.15 27.24 -51.86 -1.41 -1.56 16 26 C -0.12 -1.83 5.97 -25.07 -0.15 -1.98 16 27 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.38 10.13 7.54 -40.82 -0.31 9.82 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.44 7.92 -51.93 -0.41 1.03 16 31 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.40 3.37 7.44 -40.82 -0.30 3.06 16 36 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.22 7.64 -51.93 -0.40 0.82 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -32.51 353.76 -10.39 -42.90 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.18 Total: 7.22 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.93 Total: -8.51 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.13 Total: -53.74 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.08 Total: -8.13 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.38 Total: -0.84 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.41 Total: -1.56 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.51 -10.39 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086703386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.702 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds