Wall clock time and date at job start Tue Mar 31 2020 15:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48494 * 109.47211 * 270.00223 * 3 2 1 5 5 H 1.48494 * 109.46764 * 30.00511 * 3 2 1 6 6 H 1.48499 * 109.46887 * 150.00477 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21719 * 119.99859 * 359.97438 * 18 17 16 20 20 C 1.46443 * 119.99921 * 179.97438 * 18 17 16 21 21 S 1.75820 * 125.45954 * 359.69388 * 20 18 17 22 22 C 1.70614 * 91.58603 * 179.97438 * 21 20 18 23 23 C 1.33766 * 110.99453 * 0.30802 * 22 21 20 24 24 C 1.36784 * 125.45819 * 179.97438 * 20 18 17 25 25 Cl 1.73597 * 123.38680 * 359.94394 * 24 20 18 26 26 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 27 27 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 29 29 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 30 30 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 31 31 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 32 32 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 33 33 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 34 34 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 35 35 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 36 36 H 1.07993 * 124.50001 * 180.02562 * 22 21 20 37 37 H 1.08004 * 122.45096 * 179.74151 * 23 22 21 38 38 H 1.09002 * 110.48438 * 261.59441 * 26 10 9 39 39 H 1.08998 * 110.48431 * 24.10269 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9716 -3.5602 0.5860 12 6 2.3989 -4.0685 -1.4434 13 6 1.7095 -5.4266 -1.6887 14 6 1.5296 -6.0230 -0.2706 15 1 2.4573 -6.4768 0.0781 16 6 0.3860 -7.0392 -0.2508 17 7 0.7500 -8.1999 -1.0673 18 6 -0.1102 -9.2294 -1.1964 19 8 -1.1892 -9.1950 -0.6343 20 6 0.2535 -10.3894 -2.0130 21 16 1.7644 -10.5858 -2.8904 22 6 1.2813 -12.1143 -3.4747 23 6 0.0595 -12.4321 -3.0325 24 6 -0.5301 -11.4913 -2.2196 25 17 -2.1101 -11.6836 -1.5265 26 6 1.1732 -4.7790 0.5806 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 3.4781 -4.1717 -1.5572 30 1 2.0192 -3.3251 -2.1443 31 1 0.7409 -5.2818 -2.1673 32 1 2.3436 -6.0721 -2.2965 33 1 0.2025 -7.3596 0.7748 34 1 -0.5158 -6.5794 -0.6547 35 1 1.6102 -8.2275 -1.5149 36 1 1.8804 -12.7398 -4.1197 37 1 -0.4284 -13.3594 -3.2942 38 1 1.4161 -4.9519 1.6291 39 1 0.1181 -4.5284 0.4707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086703386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:23 Heat of formation + Delta-G solvation = -28.286315 kcal Electronic energy + Delta-G solvation = -22350.637986 eV Core-core repulsion = 18830.638034 eV Total energy + Delta-G solvation = -3519.999953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95315 -39.55238 -38.76764 -37.08151 -36.32409 -35.00255 -32.65687 -31.29218 -30.03788 -28.75314 -26.48501 -25.38915 -24.69392 -22.47974 -21.41071 -20.66176 -20.42708 -19.64808 -19.07826 -17.59581 -17.01159 -16.84425 -16.69361 -16.22518 -16.11708 -15.45490 -15.22820 -14.84075 -14.66397 -14.48834 -14.25071 -14.07199 -13.79264 -13.49718 -13.18415 -13.02434 -12.59369 -12.52257 -12.39414 -12.29181 -12.13129 -11.91573 -11.84721 -11.71722 -11.62297 -11.55898 -11.27070 -11.04078 -10.90139 -10.28231 -9.87831 -9.49854 -8.96424 -7.92555 -5.20302 -0.70119 0.13321 0.71526 1.18660 1.42353 1.47155 1.48819 1.57164 2.02076 2.04629 2.57644 3.39640 3.61682 3.70981 3.79826 3.83215 4.00224 4.15132 4.25516 4.40514 4.52506 4.60588 4.66948 4.70591 4.79566 4.80508 4.91010 4.95539 5.00486 5.07535 5.12488 5.24862 5.29705 5.47146 5.53154 5.54946 5.69722 6.30868 6.39962 7.08344 7.35456 8.15405 8.36119 9.31289 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.002166 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.534498 B =12922.655317 C =13585.297423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.738 5.738 10 C 0.163 3.837 11 H 0.047 0.953 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.085 4.085 15 H 0.109 0.891 16 C 0.137 3.863 17 N -0.709 5.709 18 C 0.579 3.421 19 O -0.556 6.556 20 C -0.306 4.306 21 S 0.304 5.696 22 C -0.203 4.203 23 C -0.159 4.159 24 C 0.005 3.995 25 Cl -0.040 7.040 26 C -0.114 4.114 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.410 0.590 36 H 0.216 0.784 37 H 0.172 0.828 38 H 0.073 0.927 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 -30.477 -8.582 32.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.377 5.377 10 C 0.055 3.945 11 H 0.065 0.935 12 C -0.179 4.179 13 C -0.145 4.145 14 C -0.104 4.104 15 H 0.127 0.873 16 C 0.013 3.987 17 N -0.361 5.361 18 C 0.365 3.635 19 O -0.436 6.436 20 C -0.427 4.427 21 S 0.570 5.430 22 C -0.341 4.341 23 C -0.189 4.189 24 C -0.038 4.038 25 Cl -0.011 7.011 26 C -0.153 4.153 27 H 0.058 0.942 28 H 0.202 0.798 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.247 0.753 36 H 0.233 0.767 37 H 0.189 0.811 38 H 0.092 0.908 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.867 -29.436 -8.276 31.573 hybrid contribution -1.614 0.430 0.128 1.675 sum 6.253 -29.006 -8.149 30.771 Atomic orbital electron populations 1.69823 1.06669 1.25879 1.60019 1.25565 0.96350 1.01133 1.04258 0.85164 0.77750 0.79676 0.77352 1.21541 1.22485 1.19280 1.19648 0.91423 0.85350 1.40268 0.90591 1.42781 1.05303 1.01141 1.88510 1.21146 0.94129 0.84861 0.94370 0.93537 1.22792 1.00085 0.96761 0.98301 1.22349 1.00330 0.95673 0.96119 1.22220 0.98332 0.93609 0.96279 0.87291 1.21292 0.97558 0.84769 0.95054 1.45707 1.20242 1.18330 1.51833 1.17137 0.84089 0.81932 0.80296 1.90878 1.23704 1.80458 1.48523 1.24552 1.03993 1.00891 1.13271 1.82929 1.10206 1.11940 1.37915 1.25731 1.00230 1.02332 1.05822 1.19931 0.96401 1.01895 1.00714 1.20739 0.89149 0.95112 0.98841 1.98400 1.22745 1.97027 1.82913 1.22510 0.99469 0.93847 0.99471 0.94203 0.79808 0.91416 0.94377 0.93106 0.89216 0.91369 0.92797 0.75313 0.76724 0.81087 0.90823 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.97 46.50 29.55 68.60 2.03 48.52 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.23 -13.05 9.96 84.03 0.84 -12.21 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -37.21 5.04 -319.51 -1.61 -38.82 16 10 C 0.16 6.16 3.55 45.71 0.16 6.32 16 11 H 0.05 1.77 8.09 -2.39 -0.02 1.75 16 12 C -0.14 -4.50 6.59 31.32 0.21 -4.30 16 13 C -0.11 -2.58 5.97 31.67 0.19 -2.39 16 14 C -0.09 -1.90 2.96 -9.50 -0.03 -1.93 16 15 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 16 C 0.14 3.19 5.11 86.38 0.44 3.63 16 17 N -0.71 -14.17 5.40 -467.30 -2.52 -16.69 16 18 C 0.58 14.43 7.78 86.38 0.67 15.11 16 19 O -0.56 -18.49 15.09 -4.41 -0.07 -18.55 16 20 C -0.31 -5.85 6.45 24.07 0.16 -5.70 16 21 S 0.30 2.72 22.15 -56.49 -1.25 1.46 16 22 C -0.20 -1.36 10.92 66.80 0.73 -0.63 16 23 C -0.16 -1.87 10.06 21.10 0.21 -1.66 16 24 C 0.01 0.10 6.40 21.78 0.14 0.24 16 25 Cl -0.04 -0.94 27.24 -2.72 -0.07 -1.01 16 26 C -0.11 -3.49 5.97 31.67 0.19 -3.30 16 27 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 28 H 0.37 20.35 7.54 -92.70 -0.70 19.65 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.50 7.92 -2.39 -0.02 1.48 16 31 H 0.05 1.39 8.01 -2.39 -0.02 1.37 16 32 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 35 H 0.41 5.64 7.44 -92.71 -0.69 4.95 16 36 H 0.22 -0.18 8.06 -2.91 -0.02 -0.20 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.85 7.64 -2.39 -0.02 1.83 16 Total: -1.00 -74.27 353.76 0.86 -73.42 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.30 Total: 23.02 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.37 Total: -11.06 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -3.85 Total: -115.80 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.07 Total: -18.55 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.25 Total: 1.46 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -74.27 0.86 -73.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086703386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.130 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds