Wall clock time and date at job start Tue Mar 31 2020 15:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48508 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47695 * 300.00207 * 3 2 1 6 6 H 1.48500 * 109.47006 * 60.00689 * 3 2 1 7 7 C 1.38807 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99602 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00646 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00218 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.01889 * 33.60787 * 10 9 7 12 12 C 1.54269 * 110.03335 * 272.16497 * 10 9 7 13 13 C 1.54880 * 104.19869 * 264.32598 * 12 10 9 14 14 C 1.54889 * 102.75067 * 322.05894 * 13 12 10 15 15 H 1.09001 * 110.59732 * 279.20692 * 14 13 12 16 16 C 1.53003 * 110.48897 * 156.61996 * 14 13 12 17 17 N 1.46494 * 109.47186 * 70.22050 * 16 14 13 18 18 C 1.34776 * 120.00204 * 179.97438 * 17 16 14 19 19 O 1.21643 * 119.99625 * 0.02562 * 18 17 16 20 20 C 1.47161 * 120.00189 * 180.02562 * 18 17 16 21 21 C 1.36048 * 123.46421 * 0.23751 * 20 18 17 22 22 S 1.70446 * 110.82548 * 180.22767 * 21 20 18 23 23 C 1.75502 * 92.45966 * 359.74204 * 22 21 20 24 24 C 1.32845 * 110.57970 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 123.46568 * 179.97438 * 24 23 22 26 26 C 1.53878 * 110.03239 * 155.00318 * 10 9 7 27 27 H 0.97002 * 119.99235 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99515 * 0.02562 * 9 7 2 29 29 H 1.09005 * 110.48325 * 23.01005 * 12 10 9 30 30 H 1.09004 * 110.48504 * 145.51162 * 12 10 9 31 31 H 1.08994 * 110.76014 * 203.74083 * 13 12 10 32 32 H 1.09005 * 110.75530 * 80.37282 * 13 12 10 33 33 H 1.09005 * 109.46996 * 310.22519 * 16 14 13 34 34 H 1.08995 * 109.46981 * 190.22887 * 16 14 13 35 35 H 0.97001 * 120.00385 * 0.02562 * 17 16 14 36 36 H 1.07998 * 124.58827 * 359.92933 * 21 20 18 37 37 H 1.07995 * 124.70670 * 179.97438 * 23 22 21 38 38 H 1.08995 * 110.03092 * 359.97438 * 26 10 9 39 39 H 1.08997 * 110.02791 * 238.57097 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9831 -3.5535 0.5663 12 6 2.3695 -4.0871 -1.4489 13 6 1.2213 -5.0613 -1.8111 14 6 0.9994 -5.8353 -0.4880 15 1 1.7388 -6.6287 -0.3792 16 6 -0.4162 -6.4137 -0.4368 17 7 -0.5332 -7.5049 -1.4072 18 6 -1.6992 -8.1679 -1.5384 19 8 -2.6547 -7.8598 -0.8515 20 6 -1.8166 -9.2645 -2.5128 21 6 -0.7935 -9.6702 -3.3125 22 16 -1.2838 -10.9557 -4.3186 23 6 -2.9059 -10.9612 -3.6485 24 6 -3.0286 -10.0244 -2.7147 25 17 -4.4967 -9.7372 -1.8339 26 6 1.1867 -4.7684 0.6104 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.3611 -3.2233 -2.1136 30 1 3.3329 -4.5949 -1.4970 31 1 1.5266 -5.7389 -2.6084 32 1 0.3229 -4.5119 -2.0926 33 1 -1.1368 -5.6327 -0.6797 34 1 -0.6170 -6.7946 0.5645 35 1 0.2288 -7.7509 -1.9547 36 1 0.1943 -9.2334 -3.3134 37 1 -3.6947 -11.6330 -3.9532 38 1 0.2192 -4.3638 0.9072 39 1 1.6895 -5.2050 1.4732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086725983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:05 Heat of formation + Delta-G solvation = -8.175495 kcal Electronic energy + Delta-G solvation = -22513.646902 eV Core-core repulsion = 18994.519020 eV Total energy + Delta-G solvation = -3519.127882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.09059 -38.32138 -37.46106 -36.14815 -34.91285 -33.29604 -31.01699 -30.15295 -28.84196 -27.31677 -25.52590 -24.07020 -23.16806 -21.60127 -20.18473 -19.53248 -19.10195 -18.56967 -17.38341 -17.08894 -16.05996 -15.47425 -15.33268 -14.91730 -14.71982 -14.00536 -13.95483 -13.79692 -13.51164 -13.30948 -13.22073 -13.12740 -12.64017 -12.16911 -11.92979 -11.74364 -11.40779 -11.21175 -11.03217 -10.81800 -10.74198 -10.58345 -10.49075 -10.25993 -10.19608 -9.98240 -9.81378 -9.61682 -9.44756 -9.10321 -8.87620 -8.78369 -6.92200 -5.74915 -3.03264 0.23827 0.81013 1.21849 1.42233 2.27031 3.03546 3.15511 3.43794 3.49311 3.51704 4.15740 4.60174 4.64316 4.77497 4.90727 4.91181 4.95945 5.08986 5.35038 5.43143 5.56218 5.57534 5.73224 5.75865 5.90968 6.01768 6.08193 6.12097 6.21769 6.34596 6.38895 6.46969 6.65877 6.75311 6.91811 7.10436 7.39035 7.72830 8.12452 8.44370 9.54962 10.14673 10.48464 11.47742 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022112 B = 0.002260 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.981877 B =12385.301366 C =12983.879277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.112 4.112 14 C -0.103 4.103 15 H 0.074 0.926 16 C 0.128 3.872 17 N -0.719 5.719 18 C 0.568 3.432 19 O -0.516 6.516 20 C -0.143 4.143 21 C -0.208 4.208 22 S 0.229 5.771 23 C -0.238 4.238 24 C -0.008 4.008 25 Cl -0.015 7.015 26 C -0.121 4.121 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.073 0.927 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -27.082 -9.270 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.150 4.150 14 C -0.122 4.122 15 H 0.092 0.908 16 C 0.005 3.995 17 N -0.371 5.371 18 C 0.352 3.648 19 O -0.393 6.393 20 C -0.161 4.161 21 C -0.347 4.347 22 S 0.494 5.506 23 C -0.374 4.374 24 C -0.047 4.047 25 Cl 0.013 6.987 26 C -0.160 4.160 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.196 0.804 37 H 0.196 0.804 38 H 0.092 0.908 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.564 -27.510 -9.751 29.229 hybrid contribution -0.248 1.744 0.809 1.939 sum -1.812 -25.766 -8.942 27.334 Atomic orbital electron populations 1.69678 1.05078 1.25496 1.57786 1.24746 0.95501 0.97672 1.03155 0.86146 0.78756 0.84293 0.77164 1.20609 1.21945 1.21912 1.19295 0.91012 0.84217 1.42416 0.91195 1.42557 1.05686 0.99715 1.88245 1.20795 0.94127 0.86097 0.92573 0.93388 1.23121 0.95965 0.98636 1.00963 1.22498 1.00028 0.97390 0.95087 1.22240 0.94599 0.97791 0.97584 0.90771 1.21564 0.97682 0.88414 0.91856 1.45867 1.13208 1.36100 1.41921 1.17432 0.83320 0.81486 0.82533 1.90876 1.37199 1.66241 1.44947 1.20060 0.92698 1.01174 1.02198 1.25665 1.03778 1.03532 1.01710 1.83148 1.02154 1.29088 1.36255 1.25444 1.02891 1.05595 1.03498 1.20685 0.89774 0.97164 0.97044 1.98413 1.30688 1.95436 1.74119 1.22466 1.01524 0.95394 0.96637 0.93582 0.78244 0.90973 0.93359 0.93119 0.91232 0.90711 0.91390 0.76952 0.80419 0.80351 0.90831 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.78 5.08 -52.34 -0.27 -18.05 16 10 C 0.17 3.34 3.55 -66.81 -0.24 3.11 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.15 -2.45 6.54 -25.08 -0.16 -2.62 16 13 C -0.11 -1.57 6.19 -24.74 -0.15 -1.72 16 14 C -0.10 -1.30 2.89 -88.96 -0.26 -1.56 16 15 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.13 1.65 4.96 -4.04 -0.02 1.63 16 17 N -0.72 -7.99 5.42 -61.47 -0.33 -8.32 16 18 C 0.57 7.50 7.79 -12.64 -0.10 7.40 16 19 O -0.52 -8.76 15.05 5.24 0.08 -8.68 16 20 C -0.14 -1.51 5.98 -104.61 -0.63 -2.13 16 21 C -0.21 -1.46 10.38 29.95 0.31 -1.15 16 22 S 0.23 1.22 23.02 -107.50 -2.47 -1.25 16 23 C -0.24 -1.74 11.00 28.88 0.32 -1.42 16 24 C -0.01 -0.08 6.49 -38.99 -0.25 -0.34 16 25 Cl -0.02 -0.19 27.24 -51.86 -1.41 -1.60 16 26 C -0.12 -1.90 6.14 -25.61 -0.16 -2.06 16 27 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.38 10.14 7.52 -40.82 -0.31 9.83 16 29 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 33 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.40 3.23 6.94 -40.82 -0.28 2.95 16 36 H 0.18 0.78 7.01 -52.49 -0.37 0.41 16 37 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -32.99 352.90 -10.06 -43.05 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.09 Total: 7.76 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.58 Total: -8.08 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.13 Total: -53.92 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.47 Total: -1.25 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.41 Total: -1.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.99 -10.06 -43.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086725983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.874 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds