Wall clock time and date at job start Tue Mar 31 2020 15:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48508 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47695 * 300.00207 * 3 2 1 6 6 H 1.48500 * 109.47006 * 60.00689 * 3 2 1 7 7 C 1.38807 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99602 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00646 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00218 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.01889 * 33.60787 * 10 9 7 12 12 C 1.54269 * 110.03335 * 272.16497 * 10 9 7 13 13 C 1.54880 * 104.19869 * 264.32598 * 12 10 9 14 14 C 1.54889 * 102.75067 * 322.05894 * 13 12 10 15 15 H 1.09001 * 110.59732 * 279.20692 * 14 13 12 16 16 C 1.53003 * 110.48897 * 156.61996 * 14 13 12 17 17 N 1.46494 * 109.47186 * 70.22050 * 16 14 13 18 18 C 1.34776 * 120.00204 * 179.97438 * 17 16 14 19 19 O 1.21643 * 119.99625 * 0.02562 * 18 17 16 20 20 C 1.47161 * 120.00189 * 180.02562 * 18 17 16 21 21 C 1.36048 * 123.46421 * 0.23751 * 20 18 17 22 22 S 1.70446 * 110.82548 * 180.22767 * 21 20 18 23 23 C 1.75502 * 92.45966 * 359.74204 * 22 21 20 24 24 C 1.32845 * 110.57970 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 123.46568 * 179.97438 * 24 23 22 26 26 C 1.53878 * 110.03239 * 155.00318 * 10 9 7 27 27 H 0.97002 * 119.99235 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99515 * 0.02562 * 9 7 2 29 29 H 1.09005 * 110.48325 * 23.01005 * 12 10 9 30 30 H 1.09004 * 110.48504 * 145.51162 * 12 10 9 31 31 H 1.08994 * 110.76014 * 203.74083 * 13 12 10 32 32 H 1.09005 * 110.75530 * 80.37282 * 13 12 10 33 33 H 1.09005 * 109.46996 * 310.22519 * 16 14 13 34 34 H 1.08995 * 109.46981 * 190.22887 * 16 14 13 35 35 H 0.97001 * 120.00385 * 0.02562 * 17 16 14 36 36 H 1.07998 * 124.58827 * 359.92933 * 21 20 18 37 37 H 1.07995 * 124.70670 * 179.97438 * 23 22 21 38 38 H 1.08995 * 110.03092 * 359.97438 * 26 10 9 39 39 H 1.08997 * 110.02791 * 238.57097 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9831 -3.5535 0.5663 12 6 2.3695 -4.0871 -1.4489 13 6 1.2213 -5.0613 -1.8111 14 6 0.9994 -5.8353 -0.4880 15 1 1.7388 -6.6287 -0.3792 16 6 -0.4162 -6.4137 -0.4368 17 7 -0.5332 -7.5049 -1.4072 18 6 -1.6992 -8.1679 -1.5384 19 8 -2.6547 -7.8598 -0.8515 20 6 -1.8166 -9.2645 -2.5128 21 6 -0.7935 -9.6702 -3.3125 22 16 -1.2838 -10.9557 -4.3186 23 6 -2.9059 -10.9612 -3.6485 24 6 -3.0286 -10.0244 -2.7147 25 17 -4.4967 -9.7372 -1.8339 26 6 1.1867 -4.7684 0.6104 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.3611 -3.2233 -2.1136 30 1 3.3329 -4.5949 -1.4970 31 1 1.5266 -5.7389 -2.6084 32 1 0.3229 -4.5119 -2.0926 33 1 -1.1368 -5.6327 -0.6797 34 1 -0.6170 -6.7946 0.5645 35 1 0.2288 -7.7509 -1.9547 36 1 0.1943 -9.2334 -3.3134 37 1 -3.6947 -11.6330 -3.9532 38 1 0.2192 -4.3638 0.9072 39 1 1.6895 -5.2050 1.4732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086725983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:01 Heat of formation + Delta-G solvation = -30.209073 kcal Electronic energy + Delta-G solvation = -22514.602349 eV Core-core repulsion = 18994.519020 eV Total energy + Delta-G solvation = -3520.083330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.02256 -39.53975 -38.29714 -36.89664 -36.27189 -34.95140 -32.58874 -31.19874 -29.98450 -28.78730 -26.46317 -25.44986 -24.75533 -22.44986 -21.27839 -20.78790 -20.17820 -19.29453 -19.07658 -18.10847 -17.17838 -16.68363 -16.40302 -16.10968 -16.06228 -15.45770 -15.16397 -14.83137 -14.53151 -14.42101 -14.19199 -14.13607 -13.82287 -13.50265 -13.11735 -12.98169 -12.57993 -12.48991 -12.48258 -12.32315 -12.11015 -11.93497 -11.75506 -11.70395 -11.60666 -11.48857 -11.38933 -10.91093 -10.85878 -10.17892 -9.97869 -9.34161 -8.95662 -7.92878 -5.20322 -0.34269 0.27110 0.66541 0.69235 1.46380 1.47104 1.57048 1.61629 2.14265 2.26246 2.57062 3.39327 3.59493 3.69191 3.78833 3.84508 3.96598 4.21434 4.27764 4.36879 4.44805 4.55924 4.61155 4.69745 4.74223 4.80591 4.83581 4.88359 4.98262 5.09651 5.15983 5.23891 5.37324 5.46260 5.52809 5.59933 5.68589 6.30860 6.54448 7.23137 7.35149 8.15876 8.36156 9.31125 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022112 B = 0.002260 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.981877 B =12385.301366 C =12983.879277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.161 3.839 11 H 0.045 0.955 12 C -0.139 4.139 13 C -0.106 4.106 14 C -0.082 4.082 15 H 0.113 0.887 16 C 0.136 3.864 17 N -0.705 5.705 18 C 0.563 3.437 19 O -0.568 6.568 20 C -0.182 4.182 21 C -0.198 4.198 22 S 0.318 5.682 23 C -0.239 4.239 24 C -0.040 4.040 25 Cl -0.048 7.048 26 C -0.118 4.118 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.414 0.586 36 H 0.209 0.791 37 H 0.198 0.802 38 H 0.047 0.953 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 -29.882 -11.163 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.053 3.947 11 H 0.063 0.937 12 C -0.179 4.179 13 C -0.143 4.143 14 C -0.101 4.101 15 H 0.131 0.869 16 C 0.012 3.988 17 N -0.357 5.357 18 C 0.349 3.651 19 O -0.448 6.448 20 C -0.200 4.200 21 C -0.336 4.336 22 S 0.584 5.416 23 C -0.376 4.376 24 C -0.078 4.078 25 Cl -0.019 7.019 26 C -0.157 4.157 27 H 0.057 0.943 28 H 0.201 0.799 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.252 0.748 36 H 0.225 0.775 37 H 0.215 0.785 38 H 0.066 0.934 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.473 -30.370 -11.674 32.570 hybrid contribution -1.052 2.449 1.289 2.961 sum 0.421 -27.921 -10.385 29.793 Atomic orbital electron populations 1.69845 1.06679 1.25744 1.60154 1.25560 0.96332 1.01117 1.04364 0.85103 0.78342 0.80054 0.76479 1.18822 1.22320 1.22319 1.19689 0.91426 0.85374 1.40003 0.90579 1.42794 1.05241 1.01110 1.88400 1.21152 0.94020 0.84976 0.94579 0.93728 1.22951 0.98665 0.98319 0.97946 1.22444 0.97655 0.97276 0.96939 1.22108 0.95115 0.97530 0.95341 0.86864 1.21291 0.97146 0.88196 0.92154 1.45641 1.13517 1.35069 1.41520 1.17931 0.82886 0.81832 0.82402 1.90844 1.38909 1.67914 1.47127 1.19835 0.94181 1.02002 1.03954 1.26110 1.04079 1.03305 1.00139 1.82964 0.99128 1.26248 1.33265 1.25838 1.05114 1.04445 1.02157 1.20879 0.89095 0.99164 0.98678 1.98390 1.32620 1.95766 1.75158 1.22384 0.99699 0.95243 0.98342 0.94264 0.79888 0.94393 0.90112 0.89106 0.94288 0.93943 0.91882 0.74831 0.77456 0.78526 0.93374 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 2 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 3 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 7 C -0.23 -13.00 9.96 84.03 0.84 -12.16 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -37.23 5.08 -319.52 -1.62 -38.85 16 10 C 0.16 6.08 3.55 45.72 0.16 6.24 16 11 H 0.04 1.70 8.08 -2.39 -0.02 1.69 16 12 C -0.14 -4.41 6.54 31.67 0.21 -4.20 16 13 C -0.11 -2.72 6.19 31.88 0.20 -2.52 16 14 C -0.08 -1.88 2.89 -9.72 -0.03 -1.90 16 15 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.14 3.46 4.96 86.38 0.43 3.89 16 17 N -0.70 -14.54 5.42 -466.63 -2.53 -17.06 16 18 C 0.56 14.82 7.79 86.59 0.67 15.49 16 19 O -0.57 -20.29 15.05 -4.17 -0.06 -20.35 16 20 C -0.18 -3.58 5.98 -19.86 -0.12 -3.70 16 21 C -0.20 -2.02 10.38 67.31 0.70 -1.32 16 22 S 0.32 2.01 23.02 -56.49 -1.30 0.71 16 23 C -0.24 -2.93 11.00 66.64 0.73 -2.20 16 24 C -0.04 -0.81 6.49 22.68 0.15 -0.67 16 25 Cl -0.05 -1.22 27.24 -2.72 -0.07 -1.29 16 26 C -0.12 -3.59 6.14 31.32 0.19 -3.40 16 27 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.37 20.50 7.52 -92.71 -0.70 19.80 16 29 H 0.04 1.47 8.04 -2.38 -0.02 1.45 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.05 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.25 7.97 -2.38 -0.02 1.23 16 33 H 0.04 1.36 8.02 -2.38 -0.02 1.35 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.41 5.21 6.94 -92.71 -0.64 4.57 16 36 H 0.21 0.68 7.01 -2.91 -0.02 0.66 16 37 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.05 1.73 7.31 -2.39 -0.02 1.71 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -77.36 352.90 1.07 -76.29 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.25 Total: 23.28 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 4.60 Total: -10.77 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.87 Total: -116.77 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.06 Total: -20.35 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.30 Total: 0.71 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.07 Total: -1.29 kcal Total: -77.36 1.07 -76.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086725983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.077 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds