Wall clock time and date at job start Tue Mar 31 2020 15:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47073 * 270.00211 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00071 * 3 2 1 6 6 H 1.48500 * 109.47149 * 150.00137 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00278 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99504 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.01799 * 33.60832 * 10 9 7 12 12 C 1.54266 * 110.03291 * 272.16718 * 10 9 7 13 13 C 1.54893 * 104.19500 * 264.33004 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05712 * 13 12 10 15 15 H 1.09001 * 110.48816 * 279.26329 * 14 13 12 16 16 C 1.53001 * 110.48548 * 156.62347 * 14 13 12 17 17 N 1.46507 * 109.47152 * 70.22343 * 16 14 13 18 18 C 1.34777 * 119.99944 * 180.02562 * 17 16 14 19 19 O 1.21697 * 119.99919 * 359.97438 * 18 17 16 20 20 C 1.46568 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.36682 * 125.45160 * 179.71807 * 20 18 17 22 22 C 1.37523 * 113.28359 * 179.79439 * 21 20 18 23 23 Cl 1.73600 * 122.45686 * 180.21897 * 22 21 20 24 24 C 1.33872 * 115.08508 * 0.49307 * 22 21 20 25 25 S 1.70618 * 110.95683 * 359.72442 * 24 22 21 26 26 C 1.53872 * 110.02808 * 155.00040 * 10 9 7 27 27 H 0.97000 * 119.99975 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00319 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.48438 * 23.00622 * 12 10 9 30 30 H 1.08998 * 110.48431 * 145.51450 * 12 10 9 31 31 H 1.09001 * 110.75228 * 203.74448 * 13 12 10 32 32 H 1.09000 * 110.75571 * 80.37081 * 13 12 10 33 33 H 1.09005 * 109.47466 * 190.22451 * 16 14 13 34 34 H 1.08994 * 109.47260 * 310.22541 * 16 14 13 35 35 H 0.97002 * 119.99923 * 359.97438 * 17 16 14 36 36 H 1.07999 * 123.35422 * 359.95558 * 21 20 18 37 37 H 1.08002 * 124.52469 * 179.70239 * 24 22 21 38 38 H 1.09003 * 110.03622 * 359.97438 * 26 10 9 39 39 H 1.09005 * 110.03465 * 238.56566 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 2.9837 -3.5532 0.5677 12 6 2.3686 -4.0877 -1.4467 13 6 1.2199 -5.0622 -1.8077 14 6 0.9992 -5.8355 -0.4840 15 1 1.7402 -6.6277 -0.3768 16 6 -0.4163 -6.4139 -0.4315 17 7 -0.5340 -7.5057 -1.4013 18 6 -1.7005 -8.1681 -1.5320 19 8 -2.6558 -7.8595 -0.8442 20 6 -1.8181 -9.2607 -2.5018 21 6 -2.9412 -10.0079 -2.7220 22 6 -2.7745 -10.9665 -3.6939 23 17 -4.0500 -12.0446 -4.1676 24 6 -1.5548 -11.0110 -4.2439 25 16 -0.5347 -9.8249 -3.5631 26 6 1.1873 -4.7681 0.6137 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 0.0023 29 1 2.3595 -3.2242 -2.1119 30 1 3.3319 -4.5955 -1.4954 31 1 1.5248 -5.7401 -2.6050 32 1 0.3214 -4.5128 -2.0887 33 1 -0.6164 -6.7945 0.5702 34 1 -1.1371 -5.6332 -0.6742 35 1 0.2274 -7.7514 -1.9498 36 1 -3.8679 -9.8586 -2.1878 37 1 -1.2562 -11.7054 -5.0154 38 1 0.2199 -4.3634 0.9112 39 1 1.6908 -5.2045 1.4764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086820231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:10 Heat of formation + Delta-G solvation = -11.440567 kcal Electronic energy + Delta-G solvation = -22233.048000 eV Core-core repulsion = 18713.778533 eV Total energy + Delta-G solvation = -3519.269466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.06459 -38.58504 -37.99236 -36.40434 -34.99986 -33.33660 -31.04340 -30.21878 -28.92632 -27.40261 -25.68514 -24.04185 -23.17849 -21.62076 -20.30783 -19.66152 -19.31707 -18.72490 -17.11232 -16.84218 -16.18351 -15.93039 -15.58773 -15.00389 -14.78406 -14.19479 -14.10078 -13.68678 -13.65494 -13.37361 -13.27479 -13.19449 -12.66403 -12.27555 -11.82349 -11.80466 -11.43056 -11.32459 -11.22259 -10.86080 -10.75881 -10.61451 -10.52231 -10.34090 -10.27438 -10.17211 -9.92068 -9.62504 -9.49329 -9.19967 -8.95348 -8.87973 -6.93381 -5.75779 -3.04172 -0.06268 0.73819 1.07208 1.70407 2.04742 2.89063 2.92830 3.43449 3.48698 3.50498 4.30384 4.55442 4.59324 4.69304 4.83229 4.91667 5.05560 5.14048 5.40543 5.53282 5.54132 5.58032 5.69778 5.71116 5.88137 5.97916 6.03499 6.08555 6.17514 6.28173 6.32388 6.44925 6.64319 6.73099 6.90107 7.08939 7.21868 7.71588 7.91475 8.43470 9.54048 10.13546 10.47353 11.46781 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.002030 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.178490 B =13791.298216 C =14050.944283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.049 0.951 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.719 5.719 18 C 0.587 3.413 19 O -0.522 6.522 20 C -0.252 4.252 21 C -0.054 4.054 22 C -0.059 4.059 23 Cl -0.046 7.046 24 C -0.233 4.233 25 S 0.252 5.748 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.165 0.835 37 H 0.180 0.820 38 H 0.073 0.927 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -26.334 -8.789 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.187 4.187 13 C -0.152 4.152 14 C -0.123 4.123 15 H 0.094 0.906 16 C 0.004 3.996 17 N -0.370 5.370 18 C 0.372 3.628 19 O -0.400 6.400 20 C -0.373 4.373 21 C -0.087 4.087 22 C -0.099 4.099 23 Cl -0.017 7.017 24 C -0.372 4.372 25 S 0.518 5.482 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.182 0.818 37 H 0.198 0.802 38 H 0.092 0.908 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.169 -25.601 -8.523 26.983 hybrid contribution -1.118 0.145 -0.333 1.176 sum -1.287 -25.456 -8.856 26.983 Atomic orbital electron populations 1.69660 1.05080 1.25629 1.57692 1.24747 0.95503 0.97679 1.03123 0.86212 0.78645 0.83990 0.77465 1.21800 1.21827 1.20810 1.19251 0.90990 0.84216 1.42563 0.91230 1.42546 1.05662 0.99697 1.88269 1.20799 0.94146 0.86084 0.92588 0.93343 1.23121 0.95961 0.98630 1.00949 1.22519 1.00112 0.97448 0.95074 1.22256 0.94435 0.97905 0.97734 0.90633 1.21632 0.97988 0.88233 0.91764 1.45912 1.12940 1.36210 1.41951 1.16817 0.83387 0.80766 0.81852 1.90873 1.37632 1.66362 1.45101 1.24631 0.99425 1.05978 1.07275 1.20535 0.99615 0.92486 0.96029 1.19554 0.91046 0.98229 1.01120 1.98382 1.49565 1.62651 1.91125 1.25263 0.97492 1.06787 1.07635 1.83164 1.11598 1.24411 1.29023 1.22469 1.01559 0.95360 0.96609 0.93528 0.78256 0.90930 0.93300 0.93010 0.91193 0.91131 0.90465 0.76928 0.81796 0.80234 0.90807 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.52 9.96 -15.05 -0.15 -6.67 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.54 5.08 -52.34 -0.27 -17.81 16 10 C 0.17 3.28 3.55 -66.81 -0.24 3.05 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.15 -2.41 6.54 -25.07 -0.16 -2.57 16 13 C -0.11 -1.56 6.19 -24.74 -0.15 -1.71 16 14 C -0.10 -1.28 2.89 -88.96 -0.26 -1.54 16 15 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 16 C 0.13 1.57 4.96 -4.04 -0.02 1.55 16 17 N -0.72 -7.77 5.44 -61.65 -0.34 -8.11 16 18 C 0.59 7.36 7.78 -12.90 -0.10 7.26 16 19 O -0.52 -8.57 16.84 5.19 0.09 -8.48 16 20 C -0.25 -2.49 6.45 -36.79 -0.24 -2.73 16 21 C -0.05 -0.52 9.89 -40.40 -0.40 -0.92 16 22 C -0.06 -0.49 6.25 -41.38 -0.26 -0.75 16 23 Cl -0.05 -0.36 29.10 -51.86 -1.51 -1.87 16 24 C -0.23 -1.52 10.78 29.20 0.31 -1.21 16 25 S 0.25 1.61 22.15 -107.50 -2.38 -0.77 16 26 C -0.12 -1.85 6.14 -25.61 -0.16 -2.00 16 27 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.38 10.00 7.52 -40.82 -0.31 9.69 16 29 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.12 8.02 -51.93 -0.42 0.70 16 35 H 0.40 3.30 7.55 -40.82 -0.31 2.99 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -31.81 356.87 -10.41 -42.22 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.17 Total: 8.26 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.92 Total: -8.75 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.12 Total: -53.25 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.38 Total: -0.77 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.81 -10.41 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086820231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.781 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds