Wall clock time and date at job start Tue Mar 31 2020 15:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47073 * 270.00211 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00071 * 3 2 1 6 6 H 1.48500 * 109.47149 * 150.00137 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00278 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99504 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.01799 * 33.60832 * 10 9 7 12 12 C 1.54266 * 110.03291 * 272.16718 * 10 9 7 13 13 C 1.54893 * 104.19500 * 264.33004 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05712 * 13 12 10 15 15 H 1.09001 * 110.48816 * 279.26329 * 14 13 12 16 16 C 1.53001 * 110.48548 * 156.62347 * 14 13 12 17 17 N 1.46507 * 109.47152 * 70.22343 * 16 14 13 18 18 C 1.34777 * 119.99944 * 180.02562 * 17 16 14 19 19 O 1.21697 * 119.99919 * 359.97438 * 18 17 16 20 20 C 1.46568 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.36682 * 125.45160 * 179.71807 * 20 18 17 22 22 C 1.37523 * 113.28359 * 179.79439 * 21 20 18 23 23 Cl 1.73600 * 122.45686 * 180.21897 * 22 21 20 24 24 C 1.33872 * 115.08508 * 0.49307 * 22 21 20 25 25 S 1.70618 * 110.95683 * 359.72442 * 24 22 21 26 26 C 1.53872 * 110.02808 * 155.00040 * 10 9 7 27 27 H 0.97000 * 119.99975 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00319 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.48438 * 23.00622 * 12 10 9 30 30 H 1.08998 * 110.48431 * 145.51450 * 12 10 9 31 31 H 1.09001 * 110.75228 * 203.74448 * 13 12 10 32 32 H 1.09000 * 110.75571 * 80.37081 * 13 12 10 33 33 H 1.09005 * 109.47466 * 190.22451 * 16 14 13 34 34 H 1.08994 * 109.47260 * 310.22541 * 16 14 13 35 35 H 0.97002 * 119.99923 * 359.97438 * 17 16 14 36 36 H 1.07999 * 123.35422 * 359.95558 * 21 20 18 37 37 H 1.08002 * 124.52469 * 179.70239 * 24 22 21 38 38 H 1.09003 * 110.03622 * 359.97438 * 26 10 9 39 39 H 1.09005 * 110.03465 * 238.56566 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 2.9837 -3.5532 0.5677 12 6 2.3686 -4.0877 -1.4467 13 6 1.2199 -5.0622 -1.8077 14 6 0.9992 -5.8355 -0.4840 15 1 1.7402 -6.6277 -0.3768 16 6 -0.4163 -6.4139 -0.4315 17 7 -0.5340 -7.5057 -1.4013 18 6 -1.7005 -8.1681 -1.5320 19 8 -2.6558 -7.8595 -0.8442 20 6 -1.8181 -9.2607 -2.5018 21 6 -2.9412 -10.0079 -2.7220 22 6 -2.7745 -10.9665 -3.6939 23 17 -4.0500 -12.0446 -4.1676 24 6 -1.5548 -11.0110 -4.2439 25 16 -0.5347 -9.8249 -3.5631 26 6 1.1873 -4.7681 0.6137 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 0.0023 29 1 2.3595 -3.2242 -2.1119 30 1 3.3319 -4.5955 -1.4954 31 1 1.5248 -5.7401 -2.6050 32 1 0.3214 -4.5128 -2.0887 33 1 -0.6164 -6.7945 0.5702 34 1 -1.1371 -5.6332 -0.6742 35 1 0.2274 -7.7514 -1.9498 36 1 -3.8679 -9.8586 -2.1878 37 1 -1.2562 -11.7054 -5.0154 38 1 0.2199 -4.3634 0.9112 39 1 1.6908 -5.2045 1.4764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086820231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:09 Heat of formation + Delta-G solvation = -31.874259 kcal Electronic energy + Delta-G solvation = -22233.934071 eV Core-core repulsion = 18713.778533 eV Total energy + Delta-G solvation = -3520.155538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02588 -39.58936 -38.93292 -37.03263 -36.31778 -35.00383 -32.61119 -31.27748 -30.06067 -28.83067 -26.64408 -25.42889 -24.72437 -22.50389 -21.33276 -20.75482 -20.42905 -19.63014 -19.07993 -17.61783 -17.10368 -16.85977 -16.70094 -16.34709 -16.16537 -15.54817 -15.19195 -14.91231 -14.80011 -14.38511 -14.25623 -14.19856 -13.85226 -13.54750 -13.13594 -12.94966 -12.47060 -12.45904 -12.42959 -12.34322 -12.14169 -11.97130 -11.90542 -11.71571 -11.61755 -11.48717 -11.40994 -11.24062 -10.87901 -10.33772 -9.99810 -9.50606 -8.94422 -7.91849 -5.19038 -0.72313 0.18383 0.43948 1.02121 1.45281 1.47189 1.48632 1.56995 1.99081 2.03533 2.57956 3.40053 3.59429 3.68662 3.80581 3.86426 3.93360 4.09705 4.21859 4.41489 4.51054 4.55633 4.61154 4.70802 4.79640 4.82505 4.86154 4.89301 4.95680 5.09674 5.15999 5.24278 5.25439 5.47113 5.53311 5.59742 5.69415 6.31801 6.35090 7.01725 7.36308 8.17274 8.37412 9.31844 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.002030 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.178490 B =13791.298216 C =14050.944283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.970 3.030 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.161 3.839 11 H 0.045 0.955 12 C -0.139 4.139 13 C -0.108 4.108 14 C -0.085 4.085 15 H 0.114 0.886 16 C 0.133 3.867 17 N -0.706 5.706 18 C 0.586 3.414 19 O -0.573 6.573 20 C -0.288 4.288 21 C -0.059 4.059 22 C -0.079 4.079 23 Cl -0.048 7.048 24 C -0.220 4.220 25 S 0.328 5.672 26 C -0.117 4.117 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.412 0.588 36 H 0.150 0.850 37 H 0.209 0.791 38 H 0.050 0.950 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 -28.730 -10.163 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.052 3.948 11 H 0.063 0.937 12 C -0.179 4.179 13 C -0.146 4.146 14 C -0.103 4.103 15 H 0.132 0.868 16 C 0.009 3.991 17 N -0.357 5.357 18 C 0.373 3.627 19 O -0.455 6.455 20 C -0.409 4.409 21 C -0.093 4.093 22 C -0.119 4.119 23 Cl -0.020 7.020 24 C -0.359 4.359 25 S 0.595 5.405 26 C -0.156 4.156 27 H 0.057 0.943 28 H 0.202 0.798 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.249 0.751 36 H 0.167 0.833 37 H 0.226 0.774 38 H 0.069 0.931 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.618 -28.048 -9.920 29.866 hybrid contribution -1.873 0.782 0.050 2.030 sum 0.746 -27.266 -9.870 29.007 Atomic orbital electron populations 1.69827 1.06629 1.25801 1.60094 1.25552 0.96335 1.01084 1.04390 0.85175 0.77742 0.79782 0.77310 1.21604 1.22576 1.19317 1.19652 0.91422 0.85395 1.40090 0.90610 1.42778 1.05234 1.01056 1.88404 1.21157 0.94069 0.85004 0.94545 0.93710 1.22951 0.98633 0.98300 0.97993 1.22476 0.97833 0.97342 0.96935 1.22135 0.95059 0.97667 0.95478 0.86819 1.21407 0.97464 0.88020 0.92168 1.45709 1.13156 1.35289 1.41582 1.17186 0.82904 0.81014 0.81647 1.90841 1.39291 1.68038 1.47287 1.24414 1.01590 1.06173 1.08696 1.20547 0.99332 0.93030 0.96396 1.19496 0.91907 0.98680 1.01790 1.98378 1.49898 1.62599 1.91094 1.25712 0.96720 1.06461 1.06982 1.82844 1.08819 1.22556 1.26239 1.22380 0.99824 0.95121 0.98264 0.94271 0.79846 0.94371 0.90142 0.89209 0.94037 0.91205 0.93309 0.75092 0.83261 0.77408 0.93148 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 3 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.23 -12.90 9.96 84.03 0.84 -12.06 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.73 -36.57 5.08 -319.51 -1.62 -38.19 16 10 C 0.16 5.94 3.55 45.71 0.16 6.10 16 11 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 12 C -0.14 -4.33 6.54 31.67 0.21 -4.12 16 13 C -0.11 -2.72 6.19 31.89 0.20 -2.53 16 14 C -0.08 -1.86 2.89 -9.72 -0.03 -1.89 16 15 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 16 C 0.13 3.20 4.96 86.38 0.43 3.63 16 17 N -0.71 -14.07 5.44 -467.18 -2.54 -16.61 16 18 C 0.59 14.53 7.78 86.42 0.67 15.20 16 19 O -0.57 -19.63 16.84 -4.34 -0.07 -19.70 16 20 C -0.29 -5.36 6.45 24.08 0.16 -5.20 16 21 C -0.06 -1.13 9.89 21.74 0.21 -0.91 16 22 C -0.08 -1.19 6.25 21.11 0.13 -1.05 16 23 Cl -0.05 -0.72 29.10 -2.72 -0.08 -0.80 16 24 C -0.22 -2.14 10.78 66.83 0.72 -1.42 16 25 S 0.33 3.03 22.15 -56.49 -1.25 1.78 16 26 C -0.12 -3.44 6.14 31.32 0.19 -3.25 16 27 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.37 20.15 7.52 -92.71 -0.70 19.45 16 29 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.29 7.97 -2.39 -0.02 1.27 16 33 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 1.47 8.02 -2.39 -0.02 1.45 16 35 H 0.41 5.41 7.55 -92.71 -0.70 4.71 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.05 1.73 7.31 -2.39 -0.02 1.72 16 39 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -72.85 356.87 0.79 -72.06 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.31 Total: 24.90 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.36 Total: -11.77 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.88 Total: -115.00 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.07 Total: -19.70 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.25 Total: 1.78 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -72.85 0.79 -72.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086820231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.181 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds