Wall clock time and date at job start Tue Mar 31 2020 15:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99682 * 2 1 4 4 H 1.48498 * 109.46903 * 239.99675 * 3 2 1 5 5 H 1.48499 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47116 * 119.99997 * 3 2 1 7 7 C 1.38810 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99818 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01966 * 33.60814 * 10 9 7 12 12 C 1.54266 * 110.03514 * 272.16774 * 10 9 7 13 13 C 1.54887 * 104.19778 * 264.32676 * 12 10 9 14 14 C 1.54884 * 102.74544 * 322.05793 * 13 12 10 15 15 H 1.09003 * 110.59572 * 279.20302 * 14 13 12 16 16 C 1.53006 * 110.48646 * 156.62092 * 14 13 12 17 17 N 1.46504 * 109.46983 * 70.22208 * 16 14 13 18 18 C 1.34781 * 119.99604 * 179.97438 * 17 16 14 19 19 O 1.21648 * 120.00043 * 0.02562 * 18 17 16 20 20 C 1.47041 * 119.99733 * 179.97438 * 18 17 16 21 21 C 1.44509 * 123.49179 * 0.02562 * 20 18 17 22 22 C 1.32695 * 113.09940 * 179.68946 * 21 20 18 23 23 S 1.75494 * 110.62754 * 0.26855 * 22 21 20 24 24 C 1.36226 * 123.49387 * 180.20756 * 20 18 17 25 25 Cl 1.73597 * 124.60181 * 359.97438 * 24 20 18 26 26 C 1.53872 * 110.03306 * 155.00189 * 10 9 7 27 27 H 0.97002 * 120.00323 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99946 * 0.02562 * 9 7 2 29 29 H 1.09002 * 110.48541 * 23.00750 * 12 10 9 30 30 H 1.08998 * 110.48912 * 145.51224 * 12 10 9 31 31 H 1.08992 * 110.75873 * 203.74044 * 13 12 10 32 32 H 1.09003 * 110.75235 * 80.36633 * 13 12 10 33 33 H 1.09002 * 109.46845 * 310.22064 * 16 14 13 34 34 H 1.09006 * 109.47034 * 190.22053 * 16 14 13 35 35 H 0.97002 * 120.00135 * 359.97438 * 17 16 14 36 36 H 1.08002 * 123.45381 * 359.96227 * 21 20 18 37 37 H 1.07997 * 124.68673 * 180.30527 * 22 21 20 38 38 H 1.09002 * 110.03003 * 359.97438 * 26 10 9 39 39 H 1.09003 * 110.03161 * 238.57078 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 1 2.9834 -3.5529 0.5695 12 6 2.3699 -4.0883 -1.4451 13 6 1.2217 -5.0629 -1.8066 14 6 0.9999 -5.8357 -0.4828 15 1 1.7394 -6.6290 -0.3733 16 6 -0.4157 -6.4142 -0.4311 17 7 -0.5325 -7.5064 -1.4005 18 6 -1.6986 -8.1695 -1.5311 19 8 -2.6541 -7.8608 -0.8444 20 6 -1.8161 -9.2654 -2.5044 21 6 -0.7313 -9.6939 -3.3575 22 6 -1.0617 -10.7039 -4.1523 23 16 -2.7328 -11.1732 -3.8933 24 6 -2.9599 -9.9796 -2.6979 25 17 -4.4444 -9.7156 -1.8376 26 6 1.1871 -4.7678 0.6146 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 0.0016 29 1 2.3614 -3.2251 -2.1107 30 1 3.3332 -4.5960 -1.4929 31 1 1.5271 -5.7412 -2.6033 32 1 0.3233 -4.5138 -2.0885 33 1 -1.1363 -5.6334 -0.6746 34 1 -0.6165 -6.7943 0.5706 35 1 0.2293 -7.7523 -1.9483 36 1 0.2494 -9.2416 -3.3462 37 1 -0.3943 -11.1727 -4.8601 38 1 0.2195 -4.3629 0.9112 39 1 1.6899 -5.2037 1.4779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086820625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:38 Heat of formation + Delta-G solvation = -7.051119 kcal Electronic energy + Delta-G solvation = -22526.863707 eV Core-core repulsion = 19007.784582 eV Total energy + Delta-G solvation = -3519.079126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.07507 -38.28254 -37.32970 -36.69947 -34.89239 -33.24676 -30.74155 -29.99035 -29.01422 -27.43607 -25.56046 -23.63787 -23.09010 -21.88377 -20.16280 -19.56662 -19.10124 -18.73575 -17.15470 -17.04943 -16.04959 -15.54637 -15.22382 -14.83261 -14.53517 -14.32202 -13.99523 -13.83665 -13.61294 -13.35128 -13.23053 -13.09432 -12.62062 -12.15057 -11.89057 -11.57137 -11.40046 -11.23162 -11.19204 -10.79532 -10.71347 -10.57867 -10.48183 -10.24245 -10.20220 -10.00122 -9.80425 -9.60048 -9.26713 -9.12688 -8.87667 -8.85309 -6.91403 -5.73776 -3.02241 0.20863 0.61757 1.28805 1.54749 1.87100 3.15726 3.19231 3.45099 3.49600 3.50770 4.31198 4.60839 4.61748 4.75127 4.92892 4.97309 5.10124 5.24244 5.42200 5.57149 5.59060 5.62619 5.74731 5.77575 5.92690 6.03345 6.10035 6.13941 6.23473 6.36284 6.41526 6.48562 6.67308 6.77106 6.93154 7.11906 7.42477 7.72659 8.14349 8.45488 9.55868 10.15719 10.49525 11.48740 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.002232 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.416342 B =12540.617860 C =13053.743163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.112 4.112 14 C -0.103 4.103 15 H 0.074 0.926 16 C 0.127 3.873 17 N -0.718 5.718 18 C 0.569 3.431 19 O -0.521 6.521 20 C -0.151 4.151 21 C -0.101 4.101 22 C -0.226 4.226 23 S 0.222 5.778 24 C -0.124 4.124 25 Cl 0.022 6.978 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.073 0.927 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -27.135 -9.090 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.150 4.150 14 C -0.122 4.122 15 H 0.093 0.907 16 C 0.004 3.996 17 N -0.369 5.369 18 C 0.354 3.646 19 O -0.397 6.397 20 C -0.170 4.170 21 C -0.130 4.130 22 C -0.362 4.362 23 S 0.486 5.514 24 C -0.271 4.271 25 Cl 0.051 6.949 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.091 0.909 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.799 -27.800 -9.101 29.498 hybrid contribution 1.387 1.983 0.351 2.445 sum -2.413 -25.817 -8.750 27.366 Atomic orbital electron populations 1.69654 1.05076 1.25734 1.57647 1.24742 0.95490 0.97647 1.03121 0.86291 0.78518 0.83720 0.77788 1.21350 1.21745 1.21319 1.19210 0.90955 0.84245 1.42658 0.91298 1.42543 1.05668 0.99694 1.88277 1.20794 0.94119 0.86096 0.92585 0.93407 1.23120 0.95986 0.98635 1.00948 1.22496 0.99998 0.97391 0.95111 1.22237 0.94615 0.97782 0.97562 0.90746 1.21563 0.97668 0.88434 0.91894 1.45868 1.13301 1.35904 1.41853 1.17396 0.83314 0.81458 0.82453 1.90873 1.37336 1.66403 1.45138 1.20381 0.92977 1.01218 1.02473 1.21142 0.99221 0.97254 0.95405 1.25538 0.99623 1.03904 1.07092 1.83243 1.06890 1.30242 1.31074 1.25314 0.94000 1.04130 1.03685 1.98426 1.27238 1.95288 1.73948 1.22466 1.01501 0.95402 0.96653 0.93479 0.78244 0.90987 0.93356 0.93054 0.91258 0.90771 0.91451 0.76755 0.82587 0.80547 0.90858 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.83 5.08 -52.35 -0.27 -18.10 16 10 C 0.17 3.36 3.55 -66.82 -0.24 3.12 16 11 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 12 C -0.15 -2.47 6.54 -25.07 -0.16 -2.63 16 13 C -0.11 -1.58 6.19 -24.74 -0.15 -1.74 16 14 C -0.10 -1.31 2.89 -88.96 -0.26 -1.57 16 15 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.13 1.66 4.96 -4.04 -0.02 1.64 16 17 N -0.72 -8.09 5.43 -61.50 -0.33 -8.43 16 18 C 0.57 7.59 7.79 -12.69 -0.10 7.49 16 19 O -0.52 -8.84 14.91 5.23 0.08 -8.76 16 20 C -0.15 -1.62 5.98 -104.58 -0.63 -2.25 16 21 C -0.10 -0.73 9.90 -39.00 -0.39 -1.11 16 22 C -0.23 -1.29 11.11 28.84 0.32 -0.97 16 23 S 0.22 1.51 23.02 -107.50 -2.47 -0.97 16 24 C -0.12 -1.31 6.87 30.01 0.21 -1.10 16 25 Cl 0.02 0.26 27.20 -51.86 -1.41 -1.15 16 26 C -0.12 -1.91 6.14 -25.62 -0.16 -2.07 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.38 10.17 7.52 -40.82 -0.31 9.86 16 29 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.13 7.97 -51.93 -0.41 0.71 16 33 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.40 3.34 6.98 -40.82 -0.29 3.06 16 36 H 0.16 0.74 7.10 -52.49 -0.37 0.37 16 37 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -32.85 352.87 -10.30 -43.15 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.09 Total: 7.56 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.82 Total: -8.44 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.13 Total: -54.15 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.97 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.41 Total: -1.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.85 -10.30 -43.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086820625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.101 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds