Wall clock time and date at job start Tue Mar 31 2020 15:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99682 * 2 1 4 4 H 1.48498 * 109.46903 * 239.99675 * 3 2 1 5 5 H 1.48499 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47116 * 119.99997 * 3 2 1 7 7 C 1.38810 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99818 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01966 * 33.60814 * 10 9 7 12 12 C 1.54266 * 110.03514 * 272.16774 * 10 9 7 13 13 C 1.54887 * 104.19778 * 264.32676 * 12 10 9 14 14 C 1.54884 * 102.74544 * 322.05793 * 13 12 10 15 15 H 1.09003 * 110.59572 * 279.20302 * 14 13 12 16 16 C 1.53006 * 110.48646 * 156.62092 * 14 13 12 17 17 N 1.46504 * 109.46983 * 70.22208 * 16 14 13 18 18 C 1.34781 * 119.99604 * 179.97438 * 17 16 14 19 19 O 1.21648 * 120.00043 * 0.02562 * 18 17 16 20 20 C 1.47041 * 119.99733 * 179.97438 * 18 17 16 21 21 C 1.44509 * 123.49179 * 0.02562 * 20 18 17 22 22 C 1.32695 * 113.09940 * 179.68946 * 21 20 18 23 23 S 1.75494 * 110.62754 * 0.26855 * 22 21 20 24 24 C 1.36226 * 123.49387 * 180.20756 * 20 18 17 25 25 Cl 1.73597 * 124.60181 * 359.97438 * 24 20 18 26 26 C 1.53872 * 110.03306 * 155.00189 * 10 9 7 27 27 H 0.97002 * 120.00323 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99946 * 0.02562 * 9 7 2 29 29 H 1.09002 * 110.48541 * 23.00750 * 12 10 9 30 30 H 1.08998 * 110.48912 * 145.51224 * 12 10 9 31 31 H 1.08992 * 110.75873 * 203.74044 * 13 12 10 32 32 H 1.09003 * 110.75235 * 80.36633 * 13 12 10 33 33 H 1.09002 * 109.46845 * 310.22064 * 16 14 13 34 34 H 1.09006 * 109.47034 * 190.22053 * 16 14 13 35 35 H 0.97002 * 120.00135 * 359.97438 * 17 16 14 36 36 H 1.08002 * 123.45381 * 359.96227 * 21 20 18 37 37 H 1.07997 * 124.68673 * 180.30527 * 22 21 20 38 38 H 1.09002 * 110.03003 * 359.97438 * 26 10 9 39 39 H 1.09003 * 110.03161 * 238.57078 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 1 2.9834 -3.5529 0.5695 12 6 2.3699 -4.0883 -1.4451 13 6 1.2217 -5.0629 -1.8066 14 6 0.9999 -5.8357 -0.4828 15 1 1.7394 -6.6290 -0.3733 16 6 -0.4157 -6.4142 -0.4311 17 7 -0.5325 -7.5064 -1.4005 18 6 -1.6986 -8.1695 -1.5311 19 8 -2.6541 -7.8608 -0.8444 20 6 -1.8161 -9.2654 -2.5044 21 6 -0.7313 -9.6939 -3.3575 22 6 -1.0617 -10.7039 -4.1523 23 16 -2.7328 -11.1732 -3.8933 24 6 -2.9599 -9.9796 -2.6979 25 17 -4.4444 -9.7156 -1.8376 26 6 1.1871 -4.7678 0.6146 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 0.0016 29 1 2.3614 -3.2251 -2.1107 30 1 3.3332 -4.5960 -1.4929 31 1 1.5271 -5.7412 -2.6033 32 1 0.3233 -4.5138 -2.0885 33 1 -1.1363 -5.6334 -0.6746 34 1 -0.6165 -6.7943 0.5706 35 1 0.2293 -7.7523 -1.9483 36 1 0.2494 -9.2416 -3.3462 37 1 -0.3943 -11.1727 -4.8601 38 1 0.2195 -4.3629 0.9112 39 1 1.6899 -5.2037 1.4779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086820625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:37 Heat of formation + Delta-G solvation = -28.733815 kcal Electronic energy + Delta-G solvation = -22527.803940 eV Core-core repulsion = 19007.784582 eV Total energy + Delta-G solvation = -3520.019358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04012 -39.53207 -38.16522 -37.42842 -36.27532 -34.92493 -32.50571 -30.75073 -30.21712 -28.90187 -26.67809 -25.28966 -24.36720 -22.64751 -21.24030 -20.83102 -20.23222 -19.46221 -19.09650 -17.92661 -17.09171 -16.70864 -16.58994 -16.15070 -15.83441 -15.28741 -15.07003 -14.90735 -14.82897 -14.44002 -14.23892 -14.19123 -13.97718 -13.49455 -13.11138 -12.93145 -12.60630 -12.45019 -12.37872 -12.16808 -12.09572 -12.06133 -11.90765 -11.69632 -11.60648 -11.48155 -11.38285 -10.89556 -10.85759 -10.16725 -9.83548 -9.51669 -8.95204 -7.92158 -5.19727 -0.48664 0.01421 0.71743 0.94392 1.19232 1.46403 1.49480 1.55578 2.22542 2.27209 2.57677 3.39643 3.65940 3.70725 3.81686 3.87141 3.98527 4.19750 4.24167 4.46202 4.56375 4.62119 4.70075 4.71933 4.82046 4.86635 4.96248 4.97046 5.10495 5.12359 5.16651 5.24795 5.37830 5.46637 5.53143 5.60361 5.69204 6.31206 6.54168 7.21331 7.35563 8.16508 8.36840 9.31434 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.002232 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.416342 B =12540.617860 C =13053.743163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.161 3.839 11 H 0.044 0.956 12 C -0.139 4.139 13 C -0.106 4.106 14 C -0.082 4.082 15 H 0.113 0.887 16 C 0.135 3.865 17 N -0.702 5.702 18 C 0.562 3.438 19 O -0.569 6.569 20 C -0.169 4.169 21 C -0.109 4.109 22 C -0.209 4.209 23 S 0.265 5.735 24 C -0.156 4.156 25 Cl -0.006 7.006 26 C -0.118 4.118 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.185 0.815 37 H 0.215 0.785 38 H 0.047 0.953 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -29.765 -10.793 31.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.053 3.947 11 H 0.063 0.937 12 C -0.179 4.179 13 C -0.143 4.143 14 C -0.101 4.101 15 H 0.131 0.869 16 C 0.011 3.989 17 N -0.354 5.354 18 C 0.349 3.651 19 O -0.449 6.449 20 C -0.189 4.189 21 C -0.137 4.137 22 C -0.344 4.344 23 S 0.529 5.471 24 C -0.303 4.303 25 Cl 0.022 6.978 26 C -0.157 4.157 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.202 0.798 37 H 0.232 0.768 38 H 0.066 0.934 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.894 -30.491 -10.835 32.371 hybrid contribution 0.565 2.672 0.832 2.855 sum -0.329 -27.818 -10.004 29.564 Atomic orbital electron populations 1.69829 1.06680 1.25913 1.60008 1.25562 0.96320 1.01125 1.04284 0.85237 0.77153 0.79356 0.78199 1.20373 1.22513 1.20372 1.19623 0.91421 0.85412 1.40324 0.90614 1.42778 1.05218 1.01084 1.88447 1.21150 0.94020 0.84986 0.94570 0.93742 1.22951 0.98680 0.98304 0.97949 1.22442 0.97638 0.97273 0.96952 1.22106 0.95120 0.97526 0.95331 0.86858 1.21305 0.97169 0.88194 0.92185 1.45657 1.13571 1.34821 1.41396 1.17899 0.82961 0.81880 0.82406 1.90847 1.38955 1.67943 1.47152 1.20446 0.94543 1.00875 1.03034 1.21328 0.99345 0.97976 0.95034 1.26037 0.99178 1.02726 1.06449 1.83136 1.07654 1.27847 1.28467 1.25710 0.93239 1.06139 1.05229 1.98408 1.28833 1.95635 1.74885 1.22384 0.99691 0.95238 0.98342 0.94244 0.79892 0.94430 0.90114 0.89091 0.94302 0.93927 0.91861 0.74636 0.79831 0.76782 0.93374 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.20 13.06 21.65 0.28 -60.91 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.24 -13.19 9.96 84.03 0.84 -12.36 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -37.31 5.08 -319.53 -1.62 -38.93 16 10 C 0.16 6.11 3.55 45.72 0.16 6.27 16 11 H 0.04 1.71 8.09 -2.39 -0.02 1.69 16 12 C -0.14 -4.44 6.54 31.67 0.21 -4.23 16 13 C -0.11 -2.74 6.19 31.88 0.20 -2.54 16 14 C -0.08 -1.89 2.89 -9.72 -0.03 -1.91 16 15 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.14 3.46 4.96 86.38 0.43 3.89 16 17 N -0.70 -14.66 5.43 -466.71 -2.53 -17.19 16 18 C 0.56 14.84 7.79 86.55 0.67 15.51 16 19 O -0.57 -20.12 14.91 -4.18 -0.06 -20.18 16 20 C -0.17 -3.39 5.98 -19.84 -0.12 -3.51 16 21 C -0.11 -1.16 9.90 22.70 0.22 -0.94 16 22 C -0.21 -1.46 11.11 66.65 0.74 -0.72 16 23 S 0.26 2.93 23.02 -56.49 -1.30 1.63 16 24 C -0.16 -3.18 6.87 67.35 0.46 -2.71 16 25 Cl -0.01 -0.16 27.20 -2.72 -0.07 -0.23 16 26 C -0.12 -3.60 6.14 31.32 0.19 -3.41 16 27 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.37 20.53 7.52 -92.71 -0.70 19.83 16 29 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.25 7.97 -2.39 -0.02 1.24 16 33 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 34 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.42 5.47 6.98 -92.71 -0.65 4.82 16 36 H 0.18 0.81 7.10 -2.91 -0.02 0.79 16 37 H 0.22 -0.12 8.06 -2.91 -0.02 -0.15 16 38 H 0.05 1.73 7.31 -2.39 -0.02 1.71 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -76.35 352.87 0.91 -75.44 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.25 Total: 22.43 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.45 Total: -10.95 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -3.87 Total: -117.03 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.06 Total: -20.18 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.30 Total: 1.63 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.07 Total: -0.23 kcal Total: -76.35 0.91 -75.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086820625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.704 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds