Wall clock time and date at job start Tue Mar 31 2020 15:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48500 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47033 * 300.00355 * 3 2 1 6 6 H 1.48500 * 109.47033 * 60.00138 * 3 2 1 7 7 C 1.38807 * 120.00601 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00455 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99688 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00126 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.01078 * 33.61193 * 10 9 7 12 12 C 1.54263 * 110.03489 * 272.17411 * 10 9 7 13 13 C 1.54894 * 104.19760 * 264.32141 * 12 10 9 14 14 C 1.54899 * 102.74407 * 322.05834 * 13 12 10 15 15 H 1.08991 * 110.59764 * 279.20075 * 14 13 12 16 16 C 1.52999 * 110.48432 * 156.61899 * 14 13 12 17 17 N 1.46500 * 109.47528 * 70.22358 * 16 14 13 18 18 C 1.34773 * 120.00431 * 180.02562 * 17 16 14 19 19 O 1.21643 * 119.99862 * 359.97438 * 18 17 16 20 20 C 1.47185 * 120.00084 * 179.72617 * 18 17 16 21 21 C 1.35968 * 123.45618 * 359.97437 * 20 18 17 22 22 S 1.70441 * 110.84661 * 179.91585 * 21 20 18 23 23 C 1.75510 * 92.45287 * 0.30319 * 22 21 20 24 24 Cl 1.73605 * 124.71649 * 179.83354 * 23 22 21 25 25 C 1.32892 * 110.56235 * 359.82576 * 23 22 21 26 26 C 1.53877 * 110.03438 * 155.00279 * 10 9 7 27 27 H 0.96991 * 120.00174 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00100 * 0.02562 * 9 7 2 29 29 H 1.09002 * 110.49012 * 23.00124 * 12 10 9 30 30 H 1.09002 * 110.48943 * 145.51707 * 12 10 9 31 31 H 1.08991 * 110.75888 * 203.74352 * 13 12 10 32 32 H 1.08996 * 110.75246 * 80.36542 * 13 12 10 33 33 H 1.09009 * 109.46941 * 310.22147 * 16 14 13 34 34 H 1.08993 * 109.47209 * 190.22546 * 16 14 13 35 35 H 0.97000 * 119.99456 * 359.97438 * 17 16 14 36 36 H 1.08001 * 124.57871 * 0.04514 * 21 20 18 37 37 H 1.07998 * 123.47307 * 180.02562 * 25 23 22 38 38 H 1.09000 * 110.03023 * 0.02562 * 26 10 9 39 39 H 1.09001 * 110.02849 * 238.57255 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9839 -3.5534 0.5646 12 6 2.3690 -4.0862 -1.4503 13 6 1.2206 -5.0605 -1.8124 14 6 0.9998 -5.8351 -0.4893 15 1 1.7393 -6.6284 -0.3814 16 6 -0.4157 -6.4137 -0.4374 17 7 -0.5333 -7.5046 -1.4081 18 6 -1.6996 -8.1669 -1.5396 19 8 -2.6547 -7.8592 -0.8519 20 6 -1.8195 -9.2589 -2.5191 21 6 -0.8004 -9.6570 -3.3264 22 16 -1.2895 -10.9444 -4.3305 23 6 -2.9117 -10.9502 -3.6606 24 17 -4.1800 -12.0294 -4.1509 25 6 -3.0339 -10.0136 -2.7257 26 6 1.1877 -4.7686 0.6094 27 1 -0.4850 0.8399 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.3600 -3.2222 -2.1148 30 1 3.3323 -4.5940 -1.4994 31 1 1.5255 -5.7376 -2.6101 32 1 0.3220 -4.5110 -2.0928 33 1 -1.1365 -5.6326 -0.6794 34 1 -0.6158 -6.7951 0.5638 35 1 0.2282 -7.7497 -1.9567 36 1 0.1864 -9.2181 -3.3294 37 1 -3.9468 -9.8354 -2.1768 38 1 0.2199 -4.3644 0.9064 39 1 1.6912 -5.2056 1.4717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086820779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:40 Heat of formation + Delta-G solvation = -11.843719 kcal Electronic energy + Delta-G solvation = -22241.728537 eV Core-core repulsion = 18722.441589 eV Total energy + Delta-G solvation = -3519.286948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.15036 -38.32635 -37.62120 -36.66562 -34.98669 -33.32879 -30.98431 -30.04913 -28.83995 -27.34010 -25.56258 -24.05442 -23.18083 -21.70736 -20.23612 -19.57678 -19.12278 -18.68455 -17.37224 -17.10145 -16.15225 -15.51437 -15.31632 -14.97500 -14.76331 -14.14346 -14.09515 -13.97912 -13.61661 -13.33199 -13.24448 -13.08474 -12.65761 -12.27227 -12.05143 -11.94722 -11.42814 -11.24144 -11.22159 -10.84848 -10.76186 -10.60409 -10.51289 -10.28749 -10.23423 -10.08388 -9.88821 -9.63039 -9.36944 -9.20586 -8.90494 -8.88493 -6.93436 -5.76026 -3.04467 0.17290 0.55103 1.24966 1.45664 1.69762 3.03944 3.12018 3.43011 3.48608 3.50967 4.31167 4.59136 4.61694 4.77306 4.87047 4.93186 5.06329 5.16254 5.32152 5.53894 5.54544 5.63286 5.71258 5.73625 5.88804 5.99339 6.05634 6.09358 6.19281 6.32458 6.33994 6.45058 6.64213 6.73312 6.90140 7.08932 7.33292 7.71830 8.04699 8.43182 9.53827 10.13366 10.47118 11.46592 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.001970 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.769984 B =14210.059665 C =14454.212229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.074 0.926 16 C 0.126 3.874 17 N -0.718 5.718 18 C 0.574 3.426 19 O -0.532 6.532 20 C -0.141 4.141 21 C -0.209 4.209 22 S 0.238 5.762 23 C -0.174 4.174 24 Cl -0.010 7.010 25 C -0.067 4.067 26 C -0.121 4.121 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.179 0.821 37 H 0.164 0.836 38 H 0.073 0.927 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -26.943 -9.259 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.150 4.150 14 C -0.122 4.122 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.369 5.369 18 C 0.358 3.642 19 O -0.409 6.409 20 C -0.159 4.159 21 C -0.348 4.348 22 S 0.502 5.498 23 C -0.317 4.317 24 Cl 0.019 6.981 25 C -0.098 4.098 26 C -0.160 4.160 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.196 0.804 37 H 0.181 0.819 38 H 0.092 0.908 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.393 -27.506 -9.874 29.257 hybrid contribution -0.256 1.657 0.726 1.827 sum -1.649 -25.848 -9.147 27.469 Atomic orbital electron populations 1.69669 1.05074 1.25517 1.57784 1.24748 0.95504 0.97679 1.03145 0.86146 0.78763 0.84287 0.77163 1.20602 1.21944 1.21916 1.19297 0.91025 0.84211 1.42425 0.91173 1.42556 1.05673 0.99708 1.88248 1.20798 0.94144 0.86098 0.92578 0.93363 1.23122 0.95960 0.98639 1.00959 1.22505 1.00059 0.97406 0.95071 1.22244 0.94537 0.97824 0.97633 0.90727 1.21593 0.97791 0.88417 0.91856 1.45872 1.13280 1.36015 1.41739 1.17464 0.83107 0.81291 0.82318 1.90833 1.37677 1.66718 1.45699 1.20098 0.93465 1.00995 1.01325 1.25815 1.04179 1.03195 1.01597 1.83199 1.00533 1.29289 1.36751 1.25106 0.96802 1.03077 1.06724 1.98385 1.47719 1.61628 1.90410 1.21181 0.99205 0.92911 0.96516 1.22471 1.01536 0.95390 0.96635 0.93571 0.78253 0.90957 0.93344 0.93093 0.91219 0.90652 0.91326 0.76800 0.80385 0.81853 0.90820 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 7 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.62 5.08 -52.34 -0.27 -17.88 16 10 C 0.17 3.30 3.55 -66.81 -0.24 3.06 16 11 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 12 C -0.15 -2.42 6.54 -25.07 -0.16 -2.58 16 13 C -0.11 -1.54 6.19 -24.73 -0.15 -1.70 16 14 C -0.10 -1.27 2.89 -88.96 -0.26 -1.53 16 15 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.13 1.58 4.96 -4.04 -0.02 1.56 16 17 N -0.72 -7.63 5.42 -61.46 -0.33 -7.96 16 18 C 0.57 7.21 7.79 -12.63 -0.10 7.11 16 19 O -0.53 -8.85 16.80 5.24 0.09 -8.76 16 20 C -0.14 -1.38 5.98 -104.63 -0.63 -2.01 16 21 C -0.21 -1.43 10.38 29.92 0.31 -1.11 16 22 S 0.24 1.45 23.02 -107.50 -2.47 -1.02 16 23 C -0.17 -1.44 7.01 28.89 0.20 -1.23 16 24 Cl -0.01 -0.08 29.27 -51.86 -1.52 -1.59 16 25 C -0.07 -0.65 10.04 -38.98 -0.39 -1.05 16 26 C -0.12 -1.87 6.14 -25.61 -0.16 -2.02 16 27 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.38 10.05 7.52 -40.82 -0.31 9.74 16 29 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 33 H 0.08 1.11 8.02 -51.92 -0.42 0.70 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.05 6.94 -40.82 -0.28 2.77 16 36 H 0.18 0.73 7.01 -52.49 -0.37 0.36 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -32.22 356.22 -10.36 -42.58 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.09 Total: 8.06 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.84 Total: -8.69 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.13 Total: -53.24 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.47 Total: -1.02 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.22 -10.36 -42.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086820779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.739 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds