Wall clock time and date at job start Tue Mar 31 2020 15:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48500 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47033 * 300.00355 * 3 2 1 6 6 H 1.48500 * 109.47033 * 60.00138 * 3 2 1 7 7 C 1.38807 * 120.00601 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00455 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99688 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00126 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.01078 * 33.61193 * 10 9 7 12 12 C 1.54263 * 110.03489 * 272.17411 * 10 9 7 13 13 C 1.54894 * 104.19760 * 264.32141 * 12 10 9 14 14 C 1.54899 * 102.74407 * 322.05834 * 13 12 10 15 15 H 1.08991 * 110.59764 * 279.20075 * 14 13 12 16 16 C 1.52999 * 110.48432 * 156.61899 * 14 13 12 17 17 N 1.46500 * 109.47528 * 70.22358 * 16 14 13 18 18 C 1.34773 * 120.00431 * 180.02562 * 17 16 14 19 19 O 1.21643 * 119.99862 * 359.97438 * 18 17 16 20 20 C 1.47185 * 120.00084 * 179.72617 * 18 17 16 21 21 C 1.35968 * 123.45618 * 359.97437 * 20 18 17 22 22 S 1.70441 * 110.84661 * 179.91585 * 21 20 18 23 23 C 1.75510 * 92.45287 * 0.30319 * 22 21 20 24 24 Cl 1.73605 * 124.71649 * 179.83354 * 23 22 21 25 25 C 1.32892 * 110.56235 * 359.82576 * 23 22 21 26 26 C 1.53877 * 110.03438 * 155.00279 * 10 9 7 27 27 H 0.96991 * 120.00174 * 359.97438 * 1 2 3 28 28 H 0.97006 * 120.00100 * 0.02562 * 9 7 2 29 29 H 1.09002 * 110.49012 * 23.00124 * 12 10 9 30 30 H 1.09002 * 110.48943 * 145.51707 * 12 10 9 31 31 H 1.08991 * 110.75888 * 203.74352 * 13 12 10 32 32 H 1.08996 * 110.75246 * 80.36542 * 13 12 10 33 33 H 1.09009 * 109.46941 * 310.22147 * 16 14 13 34 34 H 1.08993 * 109.47209 * 190.22546 * 16 14 13 35 35 H 0.97000 * 119.99456 * 359.97438 * 17 16 14 36 36 H 1.08001 * 124.57871 * 0.04514 * 21 20 18 37 37 H 1.07998 * 123.47307 * 180.02562 * 25 23 22 38 38 H 1.09000 * 110.03023 * 0.02562 * 26 10 9 39 39 H 1.09001 * 110.02849 * 238.57255 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9839 -3.5534 0.5646 12 6 2.3690 -4.0862 -1.4503 13 6 1.2206 -5.0605 -1.8124 14 6 0.9998 -5.8351 -0.4893 15 1 1.7393 -6.6284 -0.3814 16 6 -0.4157 -6.4137 -0.4374 17 7 -0.5333 -7.5046 -1.4081 18 6 -1.6996 -8.1669 -1.5396 19 8 -2.6547 -7.8592 -0.8519 20 6 -1.8195 -9.2589 -2.5191 21 6 -0.8004 -9.6570 -3.3264 22 16 -1.2895 -10.9444 -4.3305 23 6 -2.9117 -10.9502 -3.6606 24 17 -4.1800 -12.0294 -4.1509 25 6 -3.0339 -10.0136 -2.7257 26 6 1.1877 -4.7686 0.6094 27 1 -0.4850 0.8399 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.3600 -3.2222 -2.1148 30 1 3.3323 -4.5940 -1.4994 31 1 1.5255 -5.7376 -2.6101 32 1 0.3220 -4.5110 -2.0928 33 1 -1.1365 -5.6326 -0.6794 34 1 -0.6158 -6.7951 0.5638 35 1 0.2282 -7.7497 -1.9567 36 1 0.1864 -9.2181 -3.3294 37 1 -3.9468 -9.8354 -2.1768 38 1 0.2199 -4.3644 0.9064 39 1 1.6912 -5.2056 1.4717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086820779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:39 Heat of formation + Delta-G solvation = -32.795692 kcal Electronic energy + Delta-G solvation = -22242.637083 eV Core-core repulsion = 18722.441589 eV Total energy + Delta-G solvation = -3520.195494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08287 -39.53545 -38.35492 -37.34987 -36.31369 -34.98520 -32.58901 -31.09679 -29.93791 -28.78186 -26.51344 -25.44015 -24.73697 -22.54686 -21.29901 -20.79949 -20.22218 -19.39816 -19.09482 -18.12564 -17.23695 -16.68722 -16.43287 -16.13702 -16.05334 -15.51179 -15.17503 -14.85632 -14.65253 -14.62981 -14.31852 -14.20007 -13.76104 -13.52547 -13.13287 -12.98015 -12.66613 -12.61742 -12.48536 -12.33238 -12.10751 -11.96278 -11.82075 -11.70083 -11.60662 -11.48552 -11.38803 -11.05508 -10.89598 -10.20116 -9.95562 -9.49100 -8.95124 -7.92652 -5.19943 -0.43505 -0.00870 0.66031 0.70172 1.09658 1.46696 1.47265 1.57247 2.15476 2.24698 2.57255 3.39542 3.66639 3.78219 3.81029 3.84979 3.93799 4.14803 4.22328 4.44304 4.51600 4.56011 4.62145 4.70307 4.71143 4.81820 4.86009 4.92803 4.99730 5.10219 5.16562 5.24737 5.34046 5.46861 5.53409 5.60276 5.69294 6.31167 6.50443 7.17163 7.35501 8.16420 8.36503 9.31274 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.001970 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.769984 B =14210.059665 C =14454.212229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.160 3.840 11 H 0.044 0.956 12 C -0.139 4.139 13 C -0.106 4.106 14 C -0.082 4.082 15 H 0.114 0.886 16 C 0.133 3.867 17 N -0.702 5.702 18 C 0.572 3.428 19 O -0.586 6.586 20 C -0.172 4.172 21 C -0.190 4.190 22 S 0.310 5.690 23 C -0.189 4.189 24 Cl -0.010 7.010 25 C -0.086 4.086 26 C -0.118 4.118 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.416 0.584 36 H 0.213 0.787 37 H 0.146 0.854 38 H 0.048 0.952 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -29.369 -10.764 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.052 3.948 11 H 0.062 0.938 12 C -0.179 4.179 13 C -0.144 4.144 14 C -0.101 4.101 15 H 0.132 0.868 16 C 0.010 3.990 17 N -0.354 5.354 18 C 0.359 3.641 19 O -0.468 6.468 20 C -0.190 4.190 21 C -0.329 4.329 22 S 0.574 5.426 23 C -0.332 4.332 24 Cl 0.018 6.982 25 C -0.117 4.117 26 C -0.157 4.157 27 H 0.057 0.943 28 H 0.201 0.799 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.254 0.746 36 H 0.230 0.770 37 H 0.164 0.836 38 H 0.067 0.933 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.594 -29.990 -11.407 32.126 hybrid contribution -1.086 2.282 1.137 2.771 sum 0.508 -27.708 -10.270 29.555 Atomic orbital electron populations 1.69833 1.06647 1.25746 1.60162 1.25558 0.96343 1.01111 1.04405 0.85106 0.78344 0.80082 0.76458 1.18837 1.22348 1.22349 1.19690 0.91436 0.85386 1.39962 0.90575 1.42789 1.05233 1.01085 1.88391 1.21161 0.94041 0.84998 0.94591 0.93754 1.22951 0.98686 0.98330 0.97931 1.22458 0.97679 0.97294 0.96961 1.22113 0.95101 0.97563 0.95342 0.86782 1.21340 0.97258 0.88223 0.92218 1.45640 1.13547 1.34928 1.41301 1.17896 0.82640 0.81531 0.82069 1.90803 1.39515 1.68471 1.47991 1.19776 0.94726 1.01678 1.02851 1.26254 1.04644 1.02383 0.99597 1.83047 0.97671 1.27348 1.34517 1.25292 0.98347 1.02768 1.06768 1.98383 1.48116 1.61415 1.90285 1.21123 0.99134 0.94016 0.97407 1.22389 0.99730 0.95223 0.98353 0.94265 0.79874 0.94422 0.90143 0.89036 0.94205 0.93757 0.91672 0.74604 0.77032 0.83583 0.93297 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 3 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 7 C -0.23 -12.89 9.96 84.03 0.84 -12.05 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -36.76 5.08 -319.52 -1.62 -38.38 16 10 C 0.16 5.96 3.55 45.72 0.16 6.12 16 11 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 12 C -0.14 -4.33 6.54 31.67 0.21 -4.12 16 13 C -0.11 -2.65 6.19 31.89 0.20 -2.45 16 14 C -0.08 -1.80 2.89 -9.72 -0.03 -1.83 16 15 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 16 C 0.13 3.23 4.96 86.38 0.43 3.66 16 17 N -0.70 -13.51 5.42 -466.60 -2.53 -16.04 16 18 C 0.57 14.19 7.79 86.59 0.67 14.86 16 19 O -0.59 -20.47 16.80 -4.17 -0.07 -20.54 16 20 C -0.17 -3.17 5.98 -19.87 -0.12 -3.29 16 21 C -0.19 -1.89 10.38 67.29 0.70 -1.19 16 22 S 0.31 2.68 23.02 -56.49 -1.30 1.38 16 23 C -0.19 -2.87 7.01 66.64 0.47 -2.40 16 24 Cl -0.01 -0.15 29.27 -2.72 -0.08 -0.23 16 25 C -0.09 -1.67 10.04 22.68 0.23 -1.44 16 26 C -0.12 -3.50 6.14 31.32 0.19 -3.31 16 27 H 0.25 15.09 8.31 -92.72 -0.77 14.32 16 28 H 0.37 20.26 7.52 -92.70 -0.70 19.56 16 29 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 30 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.24 7.97 -2.39 -0.02 1.22 16 33 H 0.04 1.36 8.02 -2.38 -0.02 1.35 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 4.63 6.94 -92.71 -0.64 3.99 16 36 H 0.21 0.52 7.01 -2.91 -0.02 0.50 16 37 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 38 H 0.05 1.71 7.31 -2.39 -0.02 1.69 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -74.60 356.22 0.88 -73.72 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.25 Total: 23.61 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.41 Total: -11.76 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -3.87 Total: -114.85 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.07 Total: -20.54 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.30 Total: 1.38 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -74.60 0.88 -73.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086820779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.928 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds