Wall clock time and date at job start Tue Mar 31 2020 15:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47073 * 270.00211 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00071 * 3 2 1 6 6 H 1.48500 * 109.47149 * 150.00137 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00278 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99504 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.01799 * 33.60832 * 10 9 7 12 12 C 1.54266 * 110.03291 * 272.16718 * 10 9 7 13 13 C 1.54893 * 104.19500 * 264.33004 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05712 * 13 12 10 15 15 H 1.09001 * 110.48816 * 279.26329 * 14 13 12 16 16 C 1.53001 * 110.48548 * 156.62347 * 14 13 12 17 17 N 1.46507 * 109.47152 * 70.22343 * 16 14 13 18 18 C 1.34777 * 119.99944 * 180.02562 * 17 16 14 19 19 O 1.21722 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.46467 * 119.99932 * 180.02562 * 18 17 16 21 21 C 1.36687 * 125.44649 * 179.71510 * 20 18 17 22 22 C 1.37410 * 113.31246 * 179.83726 * 21 20 18 23 23 C 1.34017 * 115.07494 * 0.45194 * 22 21 20 24 24 Cl 1.73595 * 124.53103 * 179.77053 * 23 22 21 25 25 S 1.70615 * 110.93255 * 359.74908 * 23 22 21 26 26 C 1.53872 * 110.02808 * 155.00040 * 10 9 7 27 27 H 0.97000 * 119.99975 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00319 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.48438 * 23.00622 * 12 10 9 30 30 H 1.08998 * 110.48431 * 145.51450 * 12 10 9 31 31 H 1.09001 * 110.75228 * 203.74448 * 13 12 10 32 32 H 1.09000 * 110.75571 * 80.37081 * 13 12 10 33 33 H 1.09005 * 109.47466 * 190.22451 * 16 14 13 34 34 H 1.08994 * 109.47260 * 310.22541 * 16 14 13 35 35 H 0.97002 * 119.99923 * 359.97438 * 17 16 14 36 36 H 1.08000 * 123.34634 * 359.97438 * 21 20 18 37 37 H 1.07999 * 122.45962 * 180.18391 * 22 21 20 38 38 H 1.09003 * 110.03622 * 359.97438 * 26 10 9 39 39 H 1.09005 * 110.03465 * 238.56566 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 2.9837 -3.5532 0.5677 12 6 2.3686 -4.0877 -1.4467 13 6 1.2199 -5.0622 -1.8077 14 6 0.9992 -5.8355 -0.4840 15 1 1.7402 -6.6277 -0.3768 16 6 -0.4163 -6.4139 -0.4315 17 7 -0.5340 -7.5057 -1.4013 18 6 -1.7005 -8.1681 -1.5320 19 8 -2.6561 -7.8595 -0.8441 20 6 -1.8180 -9.2600 -2.5012 21 6 -2.9412 -10.0072 -2.7212 22 6 -2.7752 -10.9658 -3.6915 23 6 -1.5544 -11.0107 -4.2426 24 17 -1.0752 -12.1265 -5.4831 25 16 -0.5345 -9.8241 -3.5623 26 6 1.1873 -4.7681 0.6137 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 0.0023 29 1 2.3595 -3.2242 -2.1119 30 1 3.3319 -4.5955 -1.4954 31 1 1.5248 -5.7401 -2.6050 32 1 0.3214 -4.5128 -2.0887 33 1 -0.6164 -6.7945 0.5702 34 1 -1.1371 -5.6332 -0.6742 35 1 0.2274 -7.7514 -1.9498 36 1 -3.8679 -9.8575 -2.1870 37 1 -3.5689 -11.6367 -3.9853 38 1 0.2199 -4.3634 0.9112 39 1 1.6908 -5.2045 1.4764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086869330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:12 Heat of formation + Delta-G solvation = -10.188175 kcal Electronic energy + Delta-G solvation = -22232.499573 eV Core-core repulsion = 18713.284414 eV Total energy + Delta-G solvation = -3519.215159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.04536 -38.48958 -37.95532 -36.96493 -34.99414 -33.33094 -30.99363 -30.08080 -28.86173 -27.35765 -25.54277 -24.07219 -23.17857 -21.67717 -20.32975 -19.71259 -19.31601 -18.74353 -17.10889 -16.75865 -16.29266 -15.87017 -15.53551 -14.95024 -14.78212 -14.25331 -14.18908 -13.79973 -13.67222 -13.39969 -13.23931 -13.06542 -12.65707 -12.29718 -11.93794 -11.85219 -11.42260 -11.32965 -11.21752 -10.85391 -10.75474 -10.60832 -10.51662 -10.33019 -10.26630 -10.16591 -9.91530 -9.62132 -9.34539 -9.16234 -9.07114 -8.87616 -6.93029 -5.75473 -3.03841 -0.10530 0.50810 1.19411 1.63398 1.83820 2.89704 2.93267 3.43728 3.48994 3.50733 4.46298 4.59605 4.64126 4.83859 4.84848 4.92471 5.06537 5.32099 5.49529 5.54422 5.55543 5.70323 5.70763 5.73078 5.88856 5.98557 6.04177 6.09293 6.18167 6.28871 6.33013 6.45561 6.64899 6.73814 6.90656 7.09528 7.22669 7.71929 7.91978 8.43791 9.54374 10.13872 10.47713 11.47104 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.002088 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.418539 B =13405.128622 C =13761.969218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.049 0.951 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.720 5.720 18 C 0.587 3.413 19 O -0.523 6.523 20 C -0.254 4.254 21 C -0.051 4.051 22 C -0.133 4.133 23 C -0.169 4.169 24 Cl -0.008 7.008 25 S 0.251 5.749 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.396 0.604 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 -26.490 -8.760 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.187 4.187 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.094 0.906 16 C 0.004 3.996 17 N -0.371 5.371 18 C 0.372 3.628 19 O -0.401 6.401 20 C -0.375 4.375 21 C -0.084 4.084 22 C -0.166 4.166 23 C -0.315 4.315 24 Cl 0.021 6.979 25 S 0.517 5.483 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.181 0.819 37 H 0.173 0.827 38 H 0.092 0.908 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.410 -25.768 -8.573 27.160 hybrid contribution -0.964 0.152 -0.392 1.051 sum -1.373 -25.616 -8.965 27.174 Atomic orbital electron populations 1.69660 1.05078 1.25620 1.57720 1.24745 0.95501 0.97668 1.03131 0.86213 0.78648 0.83998 0.77467 1.21800 1.21828 1.20811 1.19253 0.90992 0.84216 1.42534 0.91231 1.42547 1.05663 0.99701 1.88270 1.20798 0.94144 0.86079 0.92588 0.93344 1.23121 0.95971 0.98631 1.00942 1.22520 1.00113 0.97453 0.95084 1.22258 0.94451 0.97910 0.97732 0.90635 1.21630 0.97983 0.88250 0.91771 1.45944 1.12972 1.36210 1.41925 1.16837 0.83363 0.80772 0.81857 1.90875 1.37639 1.66408 1.45149 1.24844 0.99502 1.06163 1.06995 1.20668 0.98902 0.92637 0.96171 1.20099 0.96666 1.01605 0.98231 1.25009 1.00559 1.03290 1.02689 1.98393 1.91160 1.58780 1.49584 1.83209 1.11478 1.24064 1.29508 1.22468 1.01552 0.95359 0.96607 0.93533 0.78256 0.90926 0.93294 0.93006 0.91189 0.91134 0.90468 0.76943 0.81927 0.82702 0.90808 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.53 9.96 -15.05 -0.15 -6.68 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.60 5.08 -52.34 -0.27 -17.86 16 10 C 0.17 3.30 3.55 -66.81 -0.24 3.06 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.15 -2.43 6.54 -25.07 -0.16 -2.60 16 13 C -0.11 -1.58 6.19 -24.74 -0.15 -1.74 16 14 C -0.10 -1.30 2.89 -88.96 -0.26 -1.56 16 15 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.13 1.58 4.96 -4.04 -0.02 1.56 16 17 N -0.72 -7.92 5.44 -61.68 -0.34 -8.26 16 18 C 0.59 7.36 7.78 -12.95 -0.10 7.26 16 19 O -0.52 -8.49 16.84 5.17 0.09 -8.40 16 20 C -0.25 -2.51 6.45 -36.83 -0.24 -2.75 16 21 C -0.05 -0.45 10.01 -40.44 -0.40 -0.85 16 22 C -0.13 -0.98 10.08 -41.37 -0.42 -1.40 16 23 C -0.17 -1.30 6.82 29.25 0.20 -1.10 16 24 Cl -0.01 -0.05 29.27 -51.86 -1.52 -1.57 16 25 S 0.25 1.88 22.15 -107.50 -2.38 -0.50 16 26 C -0.12 -1.86 6.14 -25.61 -0.16 -2.01 16 27 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.38 10.02 7.52 -40.82 -0.31 9.71 16 29 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.11 7.97 -51.93 -0.41 0.70 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.12 8.02 -51.93 -0.42 0.71 16 35 H 0.40 3.45 7.55 -40.82 -0.31 3.14 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -31.61 357.01 -10.69 -42.30 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.17 Total: 8.29 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.19 Total: -9.31 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.12 Total: -53.49 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.38 Total: -0.50 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.52 Total: -1.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.61 -10.69 -42.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086869330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.113 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds