Wall clock time and date at job start Tue Mar 31 2020 15:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47073 * 270.00211 * 3 2 1 5 5 H 1.48500 * 109.47252 * 30.00071 * 3 2 1 6 6 H 1.48500 * 109.47149 * 150.00137 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00278 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99504 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.01799 * 33.60832 * 10 9 7 12 12 C 1.54266 * 110.03291 * 272.16718 * 10 9 7 13 13 C 1.54893 * 104.19500 * 264.33004 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05712 * 13 12 10 15 15 H 1.09001 * 110.48816 * 279.26329 * 14 13 12 16 16 C 1.53001 * 110.48548 * 156.62347 * 14 13 12 17 17 N 1.46507 * 109.47152 * 70.22343 * 16 14 13 18 18 C 1.34777 * 119.99944 * 180.02562 * 17 16 14 19 19 O 1.21722 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.46467 * 119.99932 * 180.02562 * 18 17 16 21 21 C 1.36687 * 125.44649 * 179.71510 * 20 18 17 22 22 C 1.37410 * 113.31246 * 179.83726 * 21 20 18 23 23 C 1.34017 * 115.07494 * 0.45194 * 22 21 20 24 24 Cl 1.73595 * 124.53103 * 179.77053 * 23 22 21 25 25 S 1.70615 * 110.93255 * 359.74908 * 23 22 21 26 26 C 1.53872 * 110.02808 * 155.00040 * 10 9 7 27 27 H 0.97000 * 119.99975 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00319 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.48438 * 23.00622 * 12 10 9 30 30 H 1.08998 * 110.48431 * 145.51450 * 12 10 9 31 31 H 1.09001 * 110.75228 * 203.74448 * 13 12 10 32 32 H 1.09000 * 110.75571 * 80.37081 * 13 12 10 33 33 H 1.09005 * 109.47466 * 190.22451 * 16 14 13 34 34 H 1.08994 * 109.47260 * 310.22541 * 16 14 13 35 35 H 0.97002 * 119.99923 * 359.97438 * 17 16 14 36 36 H 1.08000 * 123.34634 * 359.97438 * 21 20 18 37 37 H 1.07999 * 122.45962 * 180.18391 * 22 21 20 38 38 H 1.09003 * 110.03622 * 359.97438 * 26 10 9 39 39 H 1.09005 * 110.03465 * 238.56566 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 2.9837 -3.5532 0.5677 12 6 2.3686 -4.0877 -1.4467 13 6 1.2199 -5.0622 -1.8077 14 6 0.9992 -5.8355 -0.4840 15 1 1.7402 -6.6277 -0.3768 16 6 -0.4163 -6.4139 -0.4315 17 7 -0.5340 -7.5057 -1.4013 18 6 -1.7005 -8.1681 -1.5320 19 8 -2.6561 -7.8595 -0.8441 20 6 -1.8180 -9.2600 -2.5012 21 6 -2.9412 -10.0072 -2.7212 22 6 -2.7752 -10.9658 -3.6915 23 6 -1.5544 -11.0107 -4.2426 24 17 -1.0752 -12.1265 -5.4831 25 16 -0.5345 -9.8241 -3.5623 26 6 1.1873 -4.7681 0.6137 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 0.0023 29 1 2.3595 -3.2242 -2.1119 30 1 3.3319 -4.5955 -1.4954 31 1 1.5248 -5.7401 -2.6050 32 1 0.3214 -4.5128 -2.0887 33 1 -0.6164 -6.7945 0.5702 34 1 -1.1371 -5.6332 -0.6742 35 1 0.2274 -7.7514 -1.9498 36 1 -3.8679 -9.8575 -2.1870 37 1 -3.5689 -11.6367 -3.9853 38 1 0.2199 -4.3634 0.9112 39 1 1.6908 -5.2045 1.4764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086869330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:12 Heat of formation + Delta-G solvation = -30.038049 kcal Electronic energy + Delta-G solvation = -22233.360328 eV Core-core repulsion = 18713.284414 eV Total energy + Delta-G solvation = -3520.075914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01548 -39.56834 -38.81600 -37.58740 -36.32201 -35.00284 -32.60699 -31.16690 -29.98003 -28.80045 -26.50351 -25.42365 -24.75173 -22.55962 -21.35383 -20.76573 -20.49050 -19.67607 -19.08546 -17.59260 -17.17255 -16.84925 -16.70715 -16.28127 -16.11617 -15.55382 -15.19193 -14.96610 -14.88234 -14.42183 -14.38255 -14.20809 -13.67816 -13.55375 -13.14356 -12.95270 -12.59964 -12.51738 -12.47149 -12.33938 -12.14376 -11.95871 -11.90996 -11.72208 -11.62109 -11.49185 -11.41601 -11.23068 -10.88184 -10.30254 -9.79208 -9.73389 -8.94701 -7.91972 -5.19188 -0.79260 -0.11189 0.55720 1.03593 1.16252 1.47118 1.48548 1.56907 1.98666 2.04676 2.57842 3.39877 3.61053 3.70943 3.80952 3.86473 4.02366 4.21281 4.25341 4.42313 4.54631 4.60095 4.70064 4.73207 4.79958 4.83974 4.89309 4.96705 5.08746 5.10815 5.15119 5.23704 5.24987 5.46436 5.52469 5.59186 5.68426 6.31681 6.34218 7.00827 7.36237 8.16971 8.37315 9.31719 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.002088 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.418539 B =13405.128622 C =13761.969218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.970 3.030 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.161 3.839 11 H 0.045 0.955 12 C -0.139 4.139 13 C -0.109 4.109 14 C -0.085 4.085 15 H 0.112 0.888 16 C 0.133 3.867 17 N -0.708 5.708 18 C 0.586 3.414 19 O -0.570 6.570 20 C -0.284 4.284 21 C -0.049 4.049 22 C -0.133 4.133 23 C -0.174 4.174 24 Cl 0.001 6.999 25 S 0.295 5.705 26 C -0.116 4.116 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.411 0.589 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.051 0.949 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -28.854 -9.780 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.375 5.375 10 C 0.053 3.947 11 H 0.063 0.937 12 C -0.179 4.179 13 C -0.146 4.146 14 C -0.104 4.104 15 H 0.130 0.870 16 C 0.009 3.991 17 N -0.360 5.360 18 C 0.373 3.627 19 O -0.451 6.451 20 C -0.405 4.405 21 C -0.083 4.083 22 C -0.166 4.166 23 C -0.321 4.321 24 Cl 0.029 6.971 25 S 0.562 5.438 26 C -0.155 4.155 27 H 0.057 0.943 28 H 0.202 0.798 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.247 0.753 36 H 0.180 0.820 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.551 -28.183 -9.618 29.820 hybrid contribution -1.490 0.764 -0.124 1.679 sum 0.061 -27.419 -9.742 29.099 Atomic orbital electron populations 1.69826 1.06618 1.25812 1.60067 1.25547 0.96337 1.01065 1.04358 0.85178 0.77747 0.79791 0.77308 1.21617 1.22524 1.19337 1.19648 0.91409 0.85400 1.40138 0.90651 1.42774 1.05242 1.01039 1.88403 1.21148 0.94084 0.85030 0.94464 0.93713 1.22954 0.98581 0.98284 0.98086 1.22474 0.97881 0.97331 0.96927 1.22136 0.95141 0.97662 0.95473 0.86986 1.21410 0.97401 0.88042 0.92200 1.45773 1.13243 1.35365 1.41575 1.17182 0.82880 0.80996 0.81664 1.90847 1.39134 1.67982 1.47180 1.24651 1.01348 1.06411 1.08054 1.20816 0.98709 0.92549 0.96177 1.20231 0.97248 1.01473 0.97631 1.25212 1.00865 1.03334 1.02660 1.98403 1.91064 1.58442 1.49151 1.82964 1.09734 1.23149 1.27971 1.22375 0.99871 0.95068 0.98214 0.94253 0.79816 0.94350 0.90233 0.89441 0.93949 0.91090 0.93190 0.75279 0.82033 0.80715 0.93033 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.23 -12.95 9.96 84.03 0.84 -12.12 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.73 -36.69 5.08 -319.51 -1.62 -38.32 16 10 C 0.16 6.01 3.55 45.71 0.16 6.17 16 11 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 12 C -0.14 -4.42 6.54 31.67 0.21 -4.21 16 13 C -0.11 -2.81 6.19 31.89 0.20 -2.61 16 14 C -0.09 -1.92 2.89 -9.72 -0.03 -1.95 16 15 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.13 3.23 4.96 86.38 0.43 3.66 16 17 N -0.71 -14.54 5.44 -467.26 -2.54 -17.08 16 18 C 0.59 14.44 7.78 86.39 0.67 15.12 16 19 O -0.57 -18.98 16.84 -4.42 -0.07 -19.05 16 20 C -0.28 -5.27 6.45 24.05 0.16 -5.12 16 21 C -0.05 -0.81 10.01 21.71 0.22 -0.59 16 22 C -0.13 -1.70 10.08 21.11 0.21 -1.49 16 23 C -0.17 -2.26 6.82 66.86 0.46 -1.81 16 24 Cl 0.00 0.01 29.27 -2.72 -0.08 -0.07 16 25 S 0.29 3.68 22.15 -56.49 -1.25 2.43 16 26 C -0.12 -3.45 6.14 31.32 0.19 -3.26 16 27 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.37 20.19 7.52 -92.71 -0.70 19.49 16 29 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.34 7.97 -2.39 -0.02 1.32 16 33 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.05 1.51 8.02 -2.39 -0.02 1.49 16 35 H 0.41 5.95 7.55 -92.71 -0.70 5.25 16 36 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.05 1.77 7.31 -2.39 -0.02 1.76 16 39 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -70.81 357.01 0.61 -70.20 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.31 Total: 25.90 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.18 Total: -12.44 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -3.88 Total: -115.58 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.07 Total: -19.05 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.25 Total: 2.43 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -70.81 0.61 -70.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086869330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.159 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds