Wall clock time and date at job start Tue Mar 31 2020 15:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00176 * 2 1 4 4 H 1.48501 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47435 * 300.00228 * 3 2 1 6 6 H 1.48509 * 109.46957 * 60.00353 * 3 2 1 7 7 C 1.38814 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99846 * 179.97438 * 9 7 2 11 11 C 1.53770 * 113.61531 * 205.00165 * 10 9 7 12 12 C 1.53780 * 87.08165 * 219.93606 * 11 10 9 13 13 C 1.53004 * 113.61622 * 139.98015 * 12 11 10 14 14 N 1.46499 * 109.47198 * 176.53015 * 13 12 11 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 12 16 16 O 1.21283 * 119.99990 * 359.71991 * 15 14 13 17 17 C 1.50698 * 119.99538 * 179.72653 * 15 14 13 18 18 C 1.50698 * 109.46944 * 179.97438 * 17 15 14 19 19 C 1.33350 * 125.19107 * 89.99806 * 18 17 15 20 20 C 1.38475 * 114.93168 * 180.02562 * 19 18 17 21 21 C 1.33498 * 114.88211 * 359.97438 * 20 19 18 22 22 Cl 1.73605 * 125.20730 * 180.02562 * 21 20 19 23 23 S 1.75880 * 125.18998 * 269.69615 * 18 17 15 24 24 C 1.53777 * 87.17274 * 25.38914 * 12 11 10 25 25 H 0.97003 * 119.99644 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99874 * 0.02562 * 9 7 2 27 27 H 1.09003 * 112.84858 * 336.20447 * 10 9 7 28 28 H 1.09002 * 113.61808 * 105.38951 * 11 10 9 29 29 H 1.08998 * 113.61781 * 334.48444 * 11 10 9 30 30 H 1.09000 * 113.61737 * 270.79854 * 12 11 10 31 31 H 1.09009 * 109.46730 * 56.52802 * 13 12 11 32 32 H 1.08998 * 109.46846 * 296.53346 * 13 12 11 33 33 H 0.97001 * 119.99790 * 359.97438 * 14 13 12 34 34 H 1.09003 * 109.47112 * 299.99065 * 17 15 14 35 35 H 1.08993 * 109.47916 * 59.99687 * 17 15 14 36 36 H 1.08001 * 122.53495 * 359.97438 * 19 18 17 37 37 H 1.08003 * 122.55747 * 179.97438 * 20 19 18 38 38 H 1.09002 * 113.61527 * 89.15828 * 24 12 11 39 39 H 1.09002 * 113.61599 * 220.05810 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.2595 -4.8285 -0.5971 12 6 1.8499 -5.6983 0.5253 13 6 0.8484 -6.6872 1.1255 14 7 1.5238 -7.5217 2.1224 15 6 0.8351 -8.4744 2.7817 16 8 -0.3448 -8.6374 2.5533 17 6 1.5313 -9.3369 3.8027 18 6 0.5460 -10.3141 4.3903 19 6 0.2935 -11.5327 3.9111 20 6 -0.6544 -12.2531 4.6183 21 6 -1.1708 -11.6180 5.6729 22 17 -2.3733 -12.2686 6.7428 23 16 -0.4407 -10.0244 5.8170 24 6 2.0038 -4.4050 1.3428 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 3.0652 -3.5637 -0.4077 28 1 1.5894 -5.1196 -1.5944 29 1 0.1793 -4.7006 -0.5280 30 1 2.7995 -6.1646 0.2628 31 1 0.4447 -7.3201 0.3351 32 1 0.0362 -6.1379 1.6015 33 1 2.4675 -7.3915 2.3047 34 1 2.3436 -9.8833 3.3234 35 1 1.9349 -8.7074 4.5956 36 1 0.7899 -11.9275 3.0370 37 1 -0.9530 -13.2525 4.3381 38 1 1.1274 -4.1610 1.9432 39 1 2.9337 -4.3546 1.9093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100741176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:04 Heat of formation + Delta-G solvation = 15.943453 kcal Electronic energy + Delta-G solvation = -21693.962569 eV Core-core repulsion = 18175.880563 eV Total energy + Delta-G solvation = -3518.082006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.02239 -38.64904 -38.09163 -36.90572 -34.72813 -33.34096 -32.46742 -30.29694 -28.15457 -26.53995 -25.12498 -24.05045 -23.53120 -21.11726 -20.83689 -19.78890 -19.09721 -17.92252 -17.26938 -16.99814 -16.28558 -15.99114 -15.48128 -14.89997 -14.78286 -14.18760 -13.99546 -13.72823 -13.65132 -13.46400 -13.30041 -13.10209 -12.84751 -12.20669 -11.91570 -11.83468 -11.79502 -11.44063 -11.40434 -11.25640 -11.01883 -10.87475 -10.55436 -10.30851 -10.14036 -9.94841 -9.85864 -9.52688 -9.09309 -8.90135 -8.87924 -8.81884 -6.98676 -5.80576 -3.09582 0.44792 0.78286 1.48624 1.90277 2.25318 2.48497 3.12302 3.40757 3.46203 3.48710 4.18102 4.56129 4.61917 4.71172 4.90540 4.94131 4.98670 5.02144 5.17850 5.20433 5.44160 5.47112 5.56920 5.71477 5.78574 5.81782 5.90001 5.98314 6.06428 6.21478 6.27923 6.32530 6.40472 6.55690 6.79342 7.08128 7.37100 7.67280 8.08681 8.37928 9.49036 10.07298 10.41288 11.41799 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.001786 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.091726 B =15672.394896 C =16201.451420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.724 5.724 15 C 0.509 3.491 16 O -0.530 6.530 17 C -0.073 4.073 18 C -0.151 4.151 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.152 4.152 22 Cl -0.018 7.018 23 S 0.166 5.834 24 C -0.161 4.161 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.078 0.922 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -27.102 10.610 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.376 5.376 15 C 0.293 3.707 16 O -0.406 6.406 17 C -0.115 4.115 18 C -0.269 4.269 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.296 4.296 22 Cl 0.011 6.989 23 S 0.430 5.570 24 C -0.202 4.202 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.096 0.904 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.588 -25.872 11.542 28.448 hybrid contribution 0.538 -0.293 -0.757 0.974 sum 3.127 -26.165 10.785 28.473 Atomic orbital electron populations 1.69673 1.05141 1.25656 1.57464 1.24783 0.95539 0.97832 1.02839 0.86116 0.78765 0.84075 0.77204 1.20536 1.21838 1.21854 1.19347 0.91096 0.84233 1.42872 0.91029 1.42421 1.05781 0.99895 1.86954 1.21547 0.95302 0.85051 0.92749 1.23444 1.01052 0.97010 0.96715 1.22637 0.98361 0.94390 0.99226 1.21451 0.95430 0.91961 0.90250 1.46026 1.13861 1.35956 1.41725 1.20390 0.87526 0.80756 0.82024 1.90756 1.15524 1.69018 1.65275 1.20209 0.96731 0.96178 0.98401 1.23889 1.03696 0.98676 1.00669 1.19888 0.99862 0.93842 1.01620 1.20135 0.98045 1.02014 0.94575 1.25224 1.03290 1.00010 1.01102 1.98367 1.53046 1.84714 1.62821 1.84439 1.35215 1.11643 1.25728 1.23975 1.01316 0.94984 0.99965 0.93478 0.78062 0.90692 0.91986 0.90109 0.89379 0.91753 0.91187 0.76519 0.86593 0.87471 0.83581 0.83426 0.90374 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.54 5.41 -52.55 -0.28 -17.82 16 10 C 0.17 3.11 4.48 -67.03 -0.30 2.81 16 11 C -0.14 -2.19 7.40 -25.92 -0.19 -2.38 16 12 C -0.13 -1.58 3.75 -89.81 -0.34 -1.92 16 13 C 0.13 1.62 5.50 -4.04 -0.02 1.60 16 14 N -0.72 -7.11 5.56 -60.29 -0.33 -7.45 16 15 C 0.51 5.59 7.82 -10.99 -0.09 5.51 16 16 O -0.53 -8.25 16.03 5.55 0.09 -8.16 16 17 C -0.07 -0.52 6.19 -29.04 -0.18 -0.70 16 18 C -0.15 -1.37 5.00 -36.02 -0.18 -1.55 16 19 C -0.12 -1.04 10.05 -41.20 -0.41 -1.46 16 20 C -0.12 -1.00 10.13 -41.15 -0.42 -1.42 16 21 C -0.15 -1.46 7.10 29.07 0.21 -1.26 16 22 Cl -0.02 -0.16 29.29 -51.86 -1.52 -1.68 16 23 S 0.17 1.60 23.33 -107.50 -2.51 -0.90 16 24 C -0.16 -2.54 7.45 -25.83 -0.19 -2.73 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 27 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 33 H 0.40 2.78 8.47 -40.82 -0.35 2.43 16 34 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -32.91 363.34 -11.00 -43.91 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.26 Total: 7.61 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.36 Total: -10.82 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.11 Total: -52.56 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.51 Total: -0.90 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.91 -11.00 -43.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100741176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.855 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds