Wall clock time and date at job start Tue Mar 31 2020 15:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 S 2.04997 * 103.00156 * 2 1 4 4 C 1.81408 * 102.99778 * 85.00315 * 3 2 1 5 5 C 1.53001 * 109.47092 * 69.99814 * 4 3 2 6 6 N 1.46499 * 109.47130 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00133 * 180.02562 * 6 5 4 8 8 O 1.21587 * 119.99933 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99793 * 179.97438 * 7 6 5 10 10 C 1.40027 * 119.99602 * 175.49473 * 9 7 6 11 11 C 1.38914 * 120.00061 * 215.12579 * 10 9 7 12 12 C 1.38009 * 120.00151 * 180.02562 * 11 10 9 13 13 C 1.38905 * 119.99790 * 359.97438 * 12 11 10 14 14 O 1.35784 * 119.99888 * 180.02562 * 13 12 11 15 15 C 1.34817 * 117.00006 * 5.34085 * 14 13 12 16 16 H 1.08000 * 119.99773 * 354.97190 * 15 14 13 17 17 C 1.38622 * 119.99858 * 174.96724 * 15 14 13 18 18 N 1.31571 * 120.00433 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99725 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46921 * 90.00119 * 19 17 15 21 21 H 1.48498 * 109.46855 * 209.99730 * 19 17 15 22 22 H 1.48498 * 109.47141 * 329.99776 * 19 17 15 23 23 C 1.38907 * 120.00537 * 0.27428 * 13 12 11 24 24 C 1.38011 * 119.99688 * 359.45144 * 23 13 12 25 25 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46689 * 299.99941 * 1 2 3 27 27 H 1.09002 * 109.46893 * 59.99596 * 1 2 3 28 28 H 1.09002 * 109.46812 * 309.99947 * 4 3 2 29 29 H 1.08996 * 109.46909 * 190.00186 * 4 3 2 30 30 H 1.09004 * 109.46701 * 60.00212 * 5 4 3 31 31 H 1.09003 * 109.47026 * 300.00417 * 5 4 3 32 32 H 0.97008 * 119.99849 * 0.02562 * 6 5 4 33 33 H 0.96990 * 120.00200 * 355.49507 * 9 7 6 34 34 H 1.08001 * 119.99692 * 0.02562 * 11 10 9 35 35 H 1.07992 * 119.99909 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00669 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.00245 * 179.70487 * 23 13 12 38 38 H 1.07998 * 120.00426 * 180.27380 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 16 2.2752 1.9974 0.0000 4 6 2.2170 2.4296 1.7609 5 6 3.3988 1.7810 2.4845 6 7 3.3515 2.1295 3.9067 7 6 4.2995 1.6673 4.7457 8 8 5.1944 0.9615 4.3223 9 7 4.2562 1.9884 6.0540 10 6 5.1852 1.4329 6.9423 11 6 4.8040 1.1223 8.2415 12 6 5.7198 0.5753 9.1172 13 6 7.0224 0.3347 8.6993 14 8 7.9232 -0.2040 9.5607 15 6 7.4627 -0.5841 10.7694 16 1 6.4385 -0.3808 11.0454 17 6 8.3036 -1.2362 11.6578 18 7 9.5511 -1.4845 11.3213 19 14 7.6652 -1.7636 13.3322 20 1 7.1070 -3.1365 13.2391 21 1 8.7791 -1.7477 14.3141 22 1 6.6021 -0.8258 13.7745 23 6 7.4050 0.6500 7.4017 24 6 6.4878 1.1918 6.5243 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.2838 2.0683 2.1929 29 1 2.2733 3.5125 1.8712 30 1 4.3320 2.1423 2.0524 31 1 3.3425 0.6981 2.3741 32 1 2.6377 2.6930 4.2445 33 1 3.5816 2.6043 6.3801 34 1 3.7911 1.3090 8.5663 35 1 5.4235 0.3343 10.1274 36 1 10.1394 -1.9411 11.9428 37 1 8.4190 0.4674 7.0782 38 1 6.7840 1.4329 5.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117128935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:24 Heat of formation + Delta-G solvation = -19.865484 kcal Electronic energy + Delta-G solvation = -21803.521427 eV Core-core repulsion = 18285.930335 eV Total energy + Delta-G solvation = -3517.591092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32804 -38.76995 -36.81193 -35.37961 -33.96577 -32.18147 -30.95996 -30.17132 -29.55202 -27.64307 -25.33596 -23.73791 -22.22217 -21.62997 -20.59777 -19.53548 -18.59918 -17.80199 -17.36852 -16.60916 -16.24267 -16.05879 -15.29496 -14.90294 -14.58397 -14.52976 -14.41882 -14.19189 -14.02462 -13.54843 -13.52055 -13.43193 -12.79385 -12.66704 -12.57332 -12.28204 -12.14910 -11.79218 -11.53775 -11.47155 -11.00560 -10.81202 -10.72459 -10.45104 -9.95917 -9.61887 -9.28004 -9.21469 -8.87424 -8.68122 -8.65128 -8.16237 -6.88415 -6.41269 -3.99467 -1.15073 1.10278 1.52210 2.19516 2.27886 2.76371 3.13646 3.15089 3.19913 3.32248 3.99228 4.15023 4.24635 4.27319 4.51107 4.56288 4.61907 4.79876 5.12551 5.12893 5.37194 5.37765 5.49944 5.58408 5.82154 6.16482 6.18855 6.25663 6.30421 6.68073 6.87747 6.94692 7.14442 7.25586 7.28033 7.46605 7.83857 8.01960 8.03753 8.65775 9.04033 9.75222 10.76798 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.001839 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.876840 B =15219.913776 C =15367.253399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.136 6.136 3 S -0.124 6.124 4 C -0.118 4.118 5 C 0.142 3.858 6 N -0.749 5.749 7 C 0.700 3.300 8 O -0.571 6.571 9 N -0.674 5.674 10 C 0.052 3.948 11 C -0.092 4.092 12 C -0.220 4.220 13 C 0.146 3.854 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.178 4.178 24 C -0.067 4.067 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.394 0.606 33 H 0.397 0.603 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.809 8.914 -18.640 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S -0.017 6.017 3 S -0.004 6.004 4 C -0.273 4.273 5 C 0.016 3.984 6 N -0.407 5.407 7 C 0.400 3.600 8 O -0.447 6.447 9 N -0.321 5.321 10 C -0.041 4.041 11 C -0.113 4.113 12 C -0.240 4.240 13 C 0.092 3.908 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.198 4.198 24 C -0.087 4.087 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.227 0.773 33 H 0.231 0.769 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.139 0.861 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.589 7.859 -19.923 28.359 hybrid contribution -2.309 0.554 2.215 3.247 sum -20.898 8.413 -17.708 28.655 Atomic orbital electron populations 1.24054 0.94236 1.07103 1.05933 1.89738 1.10250 1.07083 1.94654 1.89489 1.88442 1.11762 1.10722 1.24226 1.02349 1.05617 0.95123 1.21496 0.97276 1.00635 0.79041 1.45083 1.30288 1.57067 1.08288 1.15933 0.82507 0.80513 0.81073 1.90950 1.36147 1.41608 1.76006 1.42278 1.35202 1.48823 1.05825 1.17038 0.88941 1.08295 0.89790 1.20445 0.98391 0.99852 0.92563 1.20948 0.93881 1.08205 1.00960 1.19421 0.88940 0.92298 0.90125 1.83995 1.32826 1.67575 1.23704 1.21301 0.98259 1.38042 0.89142 0.89116 1.25282 0.95245 0.96371 0.99713 1.70045 1.04866 1.38545 1.36285 0.85717 0.78386 0.79189 0.80136 1.19923 1.20307 1.19259 1.20162 1.00325 1.07783 0.91539 1.20780 0.90718 0.97985 0.99199 0.86980 0.89819 0.89300 0.88586 0.86043 0.90229 0.90497 0.77258 0.76897 0.87282 0.85142 0.92054 0.86136 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 10.76 101.05 1.09 0.47 16 2 S -0.14 -1.08 22.43 -89.68 -2.01 -3.10 16 3 S -0.12 -0.92 22.25 -89.68 -2.00 -2.91 16 4 C -0.12 -0.66 6.06 37.16 0.23 -0.43 16 5 C 0.14 1.27 5.63 -4.04 -0.02 1.25 16 6 N -0.75 -6.93 5.56 -65.22 -0.36 -7.30 16 7 C 0.70 10.03 8.41 -86.92 -0.73 9.30 16 8 O -0.57 -10.86 13.78 5.29 0.07 -10.79 16 9 N -0.67 -9.14 5.35 -14.18 -0.08 -9.22 16 10 C 0.05 0.94 6.30 -83.61 -0.53 0.41 16 11 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 12 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 13 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 14 O -0.18 -5.13 9.76 -0.02 0.00 -5.13 16 15 C -0.39 -10.97 9.48 30.87 0.29 -10.68 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 19 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C -0.18 -4.01 9.99 -39.42 -0.39 -4.40 16 24 C -0.07 -1.35 8.69 -39.41 -0.34 -1.69 16 25 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.84 7.74 -51.93 -0.40 0.44 16 32 H 0.39 2.19 8.49 -40.82 -0.35 1.84 16 33 H 0.40 3.75 8.84 -40.82 -0.36 3.39 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.12 2.64 8.06 -52.49 -0.42 2.21 16 38 H 0.13 2.62 6.22 -52.49 -0.33 2.29 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -34.79 355.63 -9.32 -44.11 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.52 Total: 6.85 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.52 Total: -8.65 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.32 Total: -41.29 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.07 Total: -15.92 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -4.01 Total: -6.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.79 -9.32 -44.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117128935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.245 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds