Wall clock time and date at job start Tue Mar 31 2020 15:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 S 2.04997 * 103.00156 * 2 1 4 4 C 1.81408 * 102.99778 * 85.00315 * 3 2 1 5 5 C 1.53001 * 109.47092 * 69.99814 * 4 3 2 6 6 N 1.46499 * 109.47130 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00133 * 180.02562 * 6 5 4 8 8 O 1.21587 * 119.99933 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99793 * 179.97438 * 7 6 5 10 10 C 1.40027 * 119.99602 * 175.49473 * 9 7 6 11 11 C 1.38914 * 120.00061 * 215.12579 * 10 9 7 12 12 C 1.38009 * 120.00151 * 180.02562 * 11 10 9 13 13 C 1.38905 * 119.99790 * 359.97438 * 12 11 10 14 14 O 1.35784 * 119.99888 * 180.02562 * 13 12 11 15 15 C 1.34817 * 117.00006 * 5.34085 * 14 13 12 16 16 H 1.08000 * 119.99773 * 354.97190 * 15 14 13 17 17 C 1.38622 * 119.99858 * 174.96724 * 15 14 13 18 18 N 1.31571 * 120.00433 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99725 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46921 * 90.00119 * 19 17 15 21 21 H 1.48498 * 109.46855 * 209.99730 * 19 17 15 22 22 H 1.48498 * 109.47141 * 329.99776 * 19 17 15 23 23 C 1.38907 * 120.00537 * 0.27428 * 13 12 11 24 24 C 1.38011 * 119.99688 * 359.45144 * 23 13 12 25 25 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46689 * 299.99941 * 1 2 3 27 27 H 1.09002 * 109.46893 * 59.99596 * 1 2 3 28 28 H 1.09002 * 109.46812 * 309.99947 * 4 3 2 29 29 H 1.08996 * 109.46909 * 190.00186 * 4 3 2 30 30 H 1.09004 * 109.46701 * 60.00212 * 5 4 3 31 31 H 1.09003 * 109.47026 * 300.00417 * 5 4 3 32 32 H 0.97008 * 119.99849 * 0.02562 * 6 5 4 33 33 H 0.96990 * 120.00200 * 355.49507 * 9 7 6 34 34 H 1.08001 * 119.99692 * 0.02562 * 11 10 9 35 35 H 1.07992 * 119.99909 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00669 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.00245 * 179.70487 * 23 13 12 38 38 H 1.07998 * 120.00426 * 180.27380 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 16 2.2752 1.9974 0.0000 4 6 2.2170 2.4296 1.7609 5 6 3.3988 1.7810 2.4845 6 7 3.3515 2.1295 3.9067 7 6 4.2995 1.6673 4.7457 8 8 5.1944 0.9615 4.3223 9 7 4.2562 1.9884 6.0540 10 6 5.1852 1.4329 6.9423 11 6 4.8040 1.1223 8.2415 12 6 5.7198 0.5753 9.1172 13 6 7.0224 0.3347 8.6993 14 8 7.9232 -0.2040 9.5607 15 6 7.4627 -0.5841 10.7694 16 1 6.4385 -0.3808 11.0454 17 6 8.3036 -1.2362 11.6578 18 7 9.5511 -1.4845 11.3213 19 14 7.6652 -1.7636 13.3322 20 1 7.1070 -3.1365 13.2391 21 1 8.7791 -1.7477 14.3141 22 1 6.6021 -0.8258 13.7745 23 6 7.4050 0.6500 7.4017 24 6 6.4878 1.1918 6.5243 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.2838 2.0683 2.1929 29 1 2.2733 3.5125 1.8712 30 1 4.3320 2.1423 2.0524 31 1 3.3425 0.6981 2.3741 32 1 2.6377 2.6930 4.2445 33 1 3.5816 2.6043 6.3801 34 1 3.7911 1.3090 8.5663 35 1 5.4235 0.3343 10.1274 36 1 10.1394 -1.9411 11.9428 37 1 8.4190 0.4674 7.0782 38 1 6.7840 1.4329 5.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117128935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:23 Heat of formation + Delta-G solvation = -43.566378 kcal Electronic energy + Delta-G solvation = -21804.549174 eV Core-core repulsion = 18285.930335 eV Total energy + Delta-G solvation = -3518.618840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61864 -40.46283 -38.38623 -36.43793 -35.41293 -34.14446 -31.85270 -31.82375 -29.89949 -29.18574 -27.28850 -24.64859 -23.83546 -22.97989 -21.96616 -20.22715 -19.96797 -19.34096 -18.97447 -18.13651 -17.01229 -16.92171 -16.35650 -16.21861 -16.13972 -15.73513 -15.55789 -15.40688 -15.15429 -14.85407 -14.55323 -14.45436 -14.15132 -13.98732 -13.58466 -13.28054 -13.27248 -13.20378 -12.94334 -12.70244 -12.63948 -12.44097 -12.10113 -11.37823 -11.34461 -11.29809 -10.96198 -10.55147 -10.17786 -9.81935 -9.41443 -9.25498 -8.56167 -8.43170 -6.10729 -1.71735 0.54783 0.56833 0.64903 1.08854 1.37809 1.47245 1.55797 1.73026 2.09293 2.20911 2.86095 3.18360 3.28240 3.54960 3.56236 3.81830 4.08042 4.16816 4.21970 4.27432 4.33732 4.52491 4.60776 4.65571 4.75971 4.81298 4.84405 5.08308 5.20974 5.32143 5.34834 5.46459 5.60607 5.71124 5.99774 6.05700 6.21841 7.00806 7.05091 7.53467 7.82494 8.80154 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.001839 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.876840 B =15219.913776 C =15367.253399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.196 6.196 3 S -0.139 6.139 4 C -0.101 4.101 5 C 0.143 3.857 6 N -0.721 5.721 7 C 0.696 3.304 8 O -0.621 6.621 9 N -0.660 5.660 10 C 0.081 3.919 11 C -0.079 4.079 12 C -0.220 4.220 13 C 0.106 3.894 14 O -0.233 6.233 15 C -0.411 4.411 16 H 0.108 0.892 17 C -0.028 4.028 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.248 1.248 23 C -0.191 4.191 24 C -0.074 4.074 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.148 0.852 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.418 0.582 33 H 0.424 0.576 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.271 0.729 37 H 0.109 0.891 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.464 10.628 -18.593 33.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.077 6.077 3 S -0.019 6.019 4 C -0.255 4.255 5 C 0.017 3.983 6 N -0.380 5.380 7 C 0.396 3.604 8 O -0.501 6.501 9 N -0.309 5.309 10 C -0.013 4.013 11 C -0.099 4.099 12 C -0.239 4.239 13 C 0.055 3.945 14 O -0.140 6.140 15 C -0.487 4.487 16 H 0.125 0.875 17 C -0.224 4.224 18 N -0.562 5.562 19 Si 0.840 3.160 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.171 1.171 23 C -0.211 4.211 24 C -0.094 4.094 25 H 0.141 0.859 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.166 0.834 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.256 0.744 33 H 0.262 0.738 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.366 9.656 -19.936 32.197 hybrid contribution -1.073 0.181 1.847 2.144 sum -24.439 9.837 -18.089 31.957 Atomic orbital electron populations 1.24090 0.90319 1.08128 1.07067 1.89871 1.14409 1.08351 1.95058 1.89527 1.89211 1.10790 1.12388 1.24175 1.01501 1.06714 0.93118 1.21476 0.98342 0.99758 0.78756 1.44794 1.29413 1.55988 1.07794 1.16146 0.82686 0.80178 0.81376 1.90941 1.38416 1.43841 1.76861 1.42036 1.34794 1.48971 1.05140 1.17122 0.88595 1.05212 0.90396 1.20813 0.99838 0.97691 0.91554 1.21121 0.93105 1.07952 1.01768 1.19868 0.90283 0.93810 0.90507 1.83963 1.34939 1.70252 1.24810 1.21878 0.99203 1.38277 0.89390 0.87527 1.26651 0.95345 0.96152 1.04299 1.70209 1.06762 1.40899 1.38317 0.84549 0.78181 0.79149 0.74081 1.19030 1.19894 1.17118 1.20261 1.00663 1.08543 0.91638 1.20865 0.91683 0.98136 0.98745 0.85871 0.88408 0.88425 0.86358 0.83432 0.91826 0.92604 0.74437 0.73776 0.82169 0.84913 0.91960 0.87257 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.76 113.37 1.22 0.43 16 2 S -0.20 -2.95 22.43 -20.03 -0.45 -3.39 16 3 S -0.14 -1.83 22.25 -20.03 -0.45 -2.28 16 4 C -0.10 -0.78 6.06 71.98 0.44 -0.34 16 5 C 0.14 2.25 5.63 86.38 0.49 2.74 16 6 N -0.72 -10.74 5.56 -478.52 -2.66 -13.40 16 7 C 0.70 17.99 8.41 179.05 1.51 19.50 16 8 O -0.62 -23.04 13.78 -3.99 -0.05 -23.10 16 9 N -0.66 -15.22 5.35 -317.04 -1.69 -16.91 16 10 C 0.08 2.69 6.30 38.16 0.24 2.93 16 11 C -0.08 -2.56 9.96 22.38 0.22 -2.34 16 12 C -0.22 -9.30 9.16 22.38 0.20 -9.10 16 13 C 0.11 5.41 6.65 22.59 0.15 5.56 16 14 O -0.23 -14.28 9.76 -22.98 -0.22 -14.50 16 15 C -0.41 -23.93 9.48 67.91 0.64 -23.29 16 16 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.03 -1.57 5.49 84.82 0.47 -1.11 16 18 N -0.92 -57.57 13.67 21.61 0.30 -57.27 16 19 Si 1.02 42.74 29.55 68.60 2.03 44.76 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 22 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 23 C -0.19 -8.97 9.99 22.38 0.22 -8.74 16 24 C -0.07 -2.98 8.69 22.38 0.19 -2.78 16 25 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 1.17 7.74 -2.39 -0.02 1.15 16 32 H 0.42 2.46 8.49 -92.70 -0.79 1.67 16 33 H 0.42 5.59 8.84 -92.72 -0.82 4.77 16 34 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.13 5.51 5.63 -2.91 -0.02 5.49 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 38 H 0.13 5.29 6.22 -2.91 -0.02 5.27 16 Total: -1.00 -83.06 355.63 2.30 -80.76 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -0.49 Total: 21.87 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 5.99 Total: -16.54 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -4.06 Total: -87.58 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.28 Total: -37.60 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -0.90 Total: -5.67 kcal Total: -83.06 2.30 -80.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117128935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -83.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds