Wall clock time and date at job start Tue Mar 31 2020 15:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48498 * 109.47088 * 240.00218 * 3 2 1 5 5 H 1.48507 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47312 * 120.00005 * 3 2 1 7 7 C 1.38799 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99733 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47010 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47183 * 179.97438 * 14 13 11 16 16 N 1.46894 * 109.46769 * 180.02562 * 15 14 13 17 17 C 1.46909 * 110.99655 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46961 * 179.97438 * 17 16 15 19 19 C 1.38237 * 120.00455 * 104.99910 * 18 17 16 20 20 C 1.38224 * 120.01313 * 179.74163 * 19 18 17 21 21 C 1.38264 * 120.02445 * 0.26351 * 20 19 18 22 22 C 1.38190 * 120.01695 * 0.02562 * 21 20 19 23 23 C 1.38328 * 120.01174 * 285.27645 * 18 17 16 24 24 Cl 1.73603 * 120.01189 * 0.02562 * 23 18 17 25 25 H 0.96998 * 120.00362 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46690 * 59.99927 * 10 9 7 27 27 H 1.08990 * 109.46965 * 299.99944 * 10 9 7 28 28 H 0.97004 * 119.99943 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.47032 * 59.99864 * 14 13 11 30 30 H 1.09003 * 109.46777 * 300.00143 * 14 13 11 31 31 H 1.08996 * 109.46821 * 60.00090 * 15 14 13 32 32 H 1.08999 * 109.46762 * 300.00095 * 15 14 13 33 33 H 1.00898 * 111.00550 * 56.04592 * 16 15 14 34 34 H 1.08993 * 109.47031 * 60.00225 * 17 16 15 35 35 H 1.08991 * 109.47270 * 299.99716 * 17 16 15 36 36 H 1.08002 * 119.99593 * 0.02780 * 19 18 17 37 37 H 1.07996 * 119.98813 * 180.23496 * 20 19 18 38 38 H 1.08004 * 119.98845 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00844 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3306 -7.7151 0.0019 15 6 3.5026 -8.6985 0.0020 16 7 2.9875 -10.0742 0.0014 17 6 4.0873 -11.0481 0.0009 18 6 3.5214 -12.4448 0.0010 19 6 3.5485 -13.2017 -1.1555 20 6 3.0343 -14.4848 -1.1542 21 6 2.4876 -15.0099 0.0021 22 6 2.4545 -14.2521 1.1572 23 6 2.9695 -12.9677 1.1566 24 17 2.9279 -12.0149 2.6072 25 1 -0.4850 0.8400 0.0004 26 1 3.1245 -3.7313 0.8905 27 1 3.1245 -3.7313 -0.8894 28 1 3.8011 -6.1835 0.0015 29 1 1.7223 -7.8754 -0.8884 30 1 1.7215 -7.8749 0.8916 31 1 4.1111 -8.5383 0.8920 32 1 4.1112 -8.5384 -0.8880 33 1 2.3682 -10.2281 -0.7802 34 1 4.6999 -10.9047 0.8909 35 1 4.6998 -10.9040 -0.8890 36 1 3.9757 -12.7922 -2.0589 37 1 3.0591 -15.0771 -2.0569 38 1 2.0857 -16.0123 0.0023 39 1 2.0279 -14.6625 2.0605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:02 Heat of formation + Delta-G solvation = -23.189205 kcal Electronic energy + Delta-G solvation = -21227.451765 eV Core-core repulsion = 17707.672839 eV Total energy + Delta-G solvation = -3519.778925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.92451 -39.15068 -36.87887 -36.63421 -34.43470 -32.41640 -32.10207 -31.13927 -29.86708 -27.78479 -25.50878 -24.97599 -23.14184 -22.33611 -21.71408 -20.33304 -17.88573 -17.52681 -16.67519 -16.30136 -16.11690 -15.80015 -15.65139 -14.94813 -14.82942 -14.77910 -14.34329 -14.14378 -13.88767 -13.49119 -13.39582 -13.08481 -12.89445 -12.53035 -12.21602 -11.95909 -11.79570 -11.74462 -11.66068 -11.41994 -11.03358 -11.02886 -10.94810 -10.75897 -9.81413 -9.46059 -9.37400 -9.07417 -9.05180 -8.87002 -8.81395 -8.22397 -6.48577 -6.20180 -3.90841 0.70571 0.78148 1.90719 2.95840 3.12585 3.15400 3.24333 3.28303 3.31526 3.63266 4.09312 4.21741 4.23432 4.33206 4.52883 4.66955 4.76269 4.85610 4.92566 5.04029 5.11018 5.14713 5.21179 5.25742 5.28487 5.45516 5.63041 5.76204 5.79895 5.87880 5.91618 5.94599 5.95026 6.15128 6.31642 6.50560 6.64815 6.96005 7.60386 7.71672 8.36232 8.63606 9.24804 10.87180 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035127 B = 0.001671 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.923174 B =16752.583318 C =16909.674170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.052 3.948 16 N -0.675 5.675 17 C 0.099 3.901 18 C -0.081 4.081 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.011 4.011 24 Cl -0.053 7.053 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.397 0.603 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.345 0.655 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 -31.267 -0.939 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.394 5.394 14 C -0.001 4.001 15 C -0.078 4.078 16 N -0.307 5.307 17 C -0.029 4.029 18 C -0.083 4.083 19 C -0.121 4.121 20 C -0.137 4.137 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.038 4.038 24 Cl -0.024 7.024 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.231 0.769 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.164 0.836 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.062 -31.409 -0.117 32.691 hybrid contribution 2.744 1.410 -0.814 3.191 sum 11.806 -29.999 -0.930 32.252 Atomic orbital electron populations 1.70010 1.05944 1.27560 1.46761 1.24992 0.95030 0.99013 0.94544 0.86223 0.79230 0.81252 0.78777 1.19962 1.20806 1.19948 1.22831 0.94882 0.91697 1.59068 0.90978 1.85411 1.04920 0.96273 1.96719 1.23528 1.06569 0.95374 1.04909 1.20291 0.86507 0.86221 0.75184 1.90711 1.15358 1.85574 1.47351 1.45897 1.09924 1.05463 1.78148 1.21123 0.95693 0.80283 1.03020 1.22086 0.96611 0.87778 1.01303 1.60289 1.18285 1.01539 1.50573 1.20856 0.92715 0.87420 1.01952 1.19686 0.99850 0.96399 0.92323 1.21079 0.99494 0.94386 0.97105 1.21225 0.98392 0.95599 0.98525 1.21152 0.99027 1.00000 0.92337 1.21123 1.00150 0.92691 0.99499 1.20835 1.01353 0.92722 0.88894 1.98399 1.96843 1.71869 1.35266 0.92128 0.89201 0.89251 0.76933 0.91841 0.90613 0.90174 0.94513 0.83632 0.89419 0.93878 0.85302 0.85421 0.85179 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 10.06 7.85 -10.98 -0.09 9.98 16 12 O -0.52 -11.98 15.86 5.55 0.09 -11.90 16 13 N -0.74 -9.85 5.56 -60.29 -0.33 -10.18 16 14 C 0.12 1.45 5.93 -4.04 -0.02 1.43 16 15 C 0.05 0.43 5.80 -3.83 -0.02 0.40 16 16 N -0.68 -5.47 6.37 -115.06 -0.73 -6.20 16 17 C 0.10 0.70 5.14 -4.97 -0.03 0.67 16 18 C -0.08 -0.60 5.40 -104.59 -0.56 -1.17 16 19 C -0.10 -0.62 9.67 -39.59 -0.38 -1.00 16 20 C -0.12 -0.65 10.05 -39.58 -0.40 -1.05 16 21 C -0.11 -0.61 10.05 -39.59 -0.40 -1.00 16 22 C -0.12 -0.81 9.83 -39.55 -0.39 -1.20 16 23 C -0.01 -0.09 6.31 -39.50 -0.25 -0.34 16 24 Cl -0.05 -0.49 27.55 -51.86 -1.43 -1.92 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 28 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.35 2.67 8.72 -39.29 -0.34 2.33 16 34 H 0.09 0.66 7.60 -51.93 -0.39 0.26 16 35 H 0.04 0.25 7.95 -51.93 -0.41 -0.16 16 36 H 0.13 0.56 8.00 -52.49 -0.42 0.14 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -34.95 367.07 -10.76 -45.72 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.27 Total: 1.16 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.12 Total: -9.24 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.33 Total: -41.97 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.43 Total: -1.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.95 -10.76 -45.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.527 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds