Wall clock time and date at job start Tue Mar 31 2020 15:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48498 * 109.47088 * 240.00218 * 3 2 1 5 5 H 1.48507 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47312 * 120.00005 * 3 2 1 7 7 C 1.38799 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99733 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47010 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47183 * 179.97438 * 14 13 11 16 16 N 1.46894 * 109.46769 * 180.02562 * 15 14 13 17 17 C 1.46909 * 110.99655 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46961 * 179.97438 * 17 16 15 19 19 C 1.38237 * 120.00455 * 104.99910 * 18 17 16 20 20 C 1.38224 * 120.01313 * 179.74163 * 19 18 17 21 21 C 1.38264 * 120.02445 * 0.26351 * 20 19 18 22 22 C 1.38190 * 120.01695 * 0.02562 * 21 20 19 23 23 C 1.38328 * 120.01174 * 285.27645 * 18 17 16 24 24 Cl 1.73603 * 120.01189 * 0.02562 * 23 18 17 25 25 H 0.96998 * 120.00362 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46690 * 59.99927 * 10 9 7 27 27 H 1.08990 * 109.46965 * 299.99944 * 10 9 7 28 28 H 0.97004 * 119.99943 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.47032 * 59.99864 * 14 13 11 30 30 H 1.09003 * 109.46777 * 300.00143 * 14 13 11 31 31 H 1.08996 * 109.46821 * 60.00090 * 15 14 13 32 32 H 1.08999 * 109.46762 * 300.00095 * 15 14 13 33 33 H 1.00898 * 111.00550 * 56.04592 * 16 15 14 34 34 H 1.08993 * 109.47031 * 60.00225 * 17 16 15 35 35 H 1.08991 * 109.47270 * 299.99716 * 17 16 15 36 36 H 1.08002 * 119.99593 * 0.02780 * 19 18 17 37 37 H 1.07996 * 119.98813 * 180.23496 * 20 19 18 38 38 H 1.08004 * 119.98845 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00844 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3306 -7.7151 0.0019 15 6 3.5026 -8.6985 0.0020 16 7 2.9875 -10.0742 0.0014 17 6 4.0873 -11.0481 0.0009 18 6 3.5214 -12.4448 0.0010 19 6 3.5485 -13.2017 -1.1555 20 6 3.0343 -14.4848 -1.1542 21 6 2.4876 -15.0099 0.0021 22 6 2.4545 -14.2521 1.1572 23 6 2.9695 -12.9677 1.1566 24 17 2.9279 -12.0149 2.6072 25 1 -0.4850 0.8400 0.0004 26 1 3.1245 -3.7313 0.8905 27 1 3.1245 -3.7313 -0.8894 28 1 3.8011 -6.1835 0.0015 29 1 1.7223 -7.8754 -0.8884 30 1 1.7215 -7.8749 0.8916 31 1 4.1111 -8.5383 0.8920 32 1 4.1112 -8.5384 -0.8880 33 1 2.3682 -10.2281 -0.7802 34 1 4.6999 -10.9047 0.8909 35 1 4.6998 -10.9040 -0.8890 36 1 3.9757 -12.7922 -2.0589 37 1 3.0591 -15.0771 -2.0569 38 1 2.0857 -16.0123 0.0023 39 1 2.0279 -14.6625 2.0605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:02 Heat of formation + Delta-G solvation = -47.702760 kcal Electronic energy + Delta-G solvation = -21228.514752 eV Core-core repulsion = 17707.672839 eV Total energy + Delta-G solvation = -3520.841913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64408 -40.35678 -37.65871 -37.24472 -35.55252 -34.57822 -32.84362 -31.62537 -31.17118 -28.79372 -27.63603 -25.69769 -23.60753 -23.16235 -22.23864 -21.75123 -19.84134 -18.12935 -17.79792 -17.33330 -17.16663 -16.87221 -16.63617 -16.39680 -16.00788 -15.86494 -15.33129 -15.09774 -14.72268 -14.66081 -14.41662 -14.18903 -13.94386 -13.54650 -13.43508 -13.16591 -12.86351 -12.72458 -12.61945 -12.44212 -12.38089 -12.31847 -12.14746 -11.74289 -11.53962 -11.12366 -11.00029 -10.27516 -10.13790 -9.89590 -9.59566 -9.39691 -8.66663 -8.33873 -6.12416 0.22052 0.31636 1.26834 1.32811 1.44531 1.47048 1.56768 1.61005 2.20008 2.28491 2.68547 3.00067 3.28772 3.42902 3.72548 3.84337 3.89108 4.05471 4.09953 4.17984 4.31389 4.34126 4.45643 4.49868 4.51391 4.55310 4.63984 4.81857 4.93202 4.94841 5.01650 5.32636 5.40125 5.42157 5.42868 5.50556 5.87653 5.95878 6.20176 6.36011 6.50346 7.07063 7.24529 8.75122 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035127 B = 0.001671 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.923174 B =16752.583318 C =16909.674170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.126 3.874 15 C 0.066 3.934 16 N -0.687 5.687 17 C 0.104 3.896 18 C -0.093 4.093 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.030 4.030 24 Cl -0.073 7.073 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.418 0.582 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.347 0.653 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 -32.150 -1.972 35.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.366 5.366 14 C 0.002 3.998 15 C -0.063 4.063 16 N -0.319 5.319 17 C -0.024 4.024 18 C -0.095 4.095 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.058 4.058 24 Cl -0.044 7.044 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.255 0.745 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.802 -32.336 -1.151 34.441 hybrid contribution 1.943 1.483 -0.521 2.499 sum 13.744 -30.853 -1.672 33.817 Atomic orbital electron populations 1.70183 1.08001 1.28675 1.47932 1.26147 0.95973 1.03367 0.93723 0.84992 0.77783 0.75629 0.79508 1.18578 1.20434 1.18676 1.23182 0.95389 0.91958 1.58985 0.89793 1.85613 1.10686 0.99325 1.97068 1.23366 1.03514 0.94165 1.06938 1.20085 0.86198 0.86737 0.75107 1.90701 1.17555 1.86128 1.50151 1.45597 1.10390 1.04984 1.75586 1.21176 0.97074 0.79858 1.01718 1.21919 0.94917 0.86969 1.02504 1.60236 1.19062 1.01574 1.50995 1.20819 0.92288 0.86934 1.02380 1.19817 1.00275 0.96791 0.92570 1.21354 0.99194 0.94586 0.97218 1.21582 0.97349 0.95593 0.99303 1.21471 0.98518 1.00834 0.91877 1.21324 1.00399 0.92578 1.00470 1.21035 1.02838 0.93251 0.88635 1.98384 1.97034 1.72449 1.36516 0.92001 0.87125 0.86965 0.74530 0.92482 0.92715 0.89637 0.92496 0.83428 0.90111 0.92149 0.83433 0.83044 0.82986 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 10 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 11 C 0.53 19.86 7.85 87.66 0.69 20.55 16 12 O -0.57 -26.95 15.86 -3.05 -0.05 -27.00 16 13 N -0.71 -17.66 5.56 -463.05 -2.57 -20.23 16 14 C 0.13 2.83 5.93 86.38 0.51 3.35 16 15 C 0.07 0.95 5.80 86.30 0.50 1.45 16 16 N -0.69 -10.19 6.37 -517.95 -3.30 -13.49 16 17 C 0.10 1.29 5.14 85.55 0.44 1.73 16 18 C -0.09 -1.27 5.40 -19.84 -0.11 -1.38 16 19 C -0.10 -1.05 9.67 22.27 0.22 -0.83 16 20 C -0.12 -1.03 10.05 22.27 0.22 -0.80 16 21 C -0.11 -1.04 10.05 22.26 0.22 -0.82 16 22 C -0.13 -1.71 9.83 22.29 0.22 -1.49 16 23 C -0.03 -0.49 6.31 22.32 0.14 -0.35 16 24 Cl -0.07 -1.37 27.55 -2.72 -0.07 -1.44 16 25 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 27 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 28 H 0.42 7.12 8.47 -92.70 -0.79 6.34 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.35 4.93 8.72 -89.70 -0.78 4.15 16 34 H 0.08 1.11 7.60 -2.39 -0.02 1.09 16 35 H 0.06 0.54 7.95 -2.39 -0.02 0.52 16 36 H 0.15 0.85 8.00 -2.91 -0.02 0.82 16 37 H 0.15 0.53 8.06 -2.91 -0.02 0.50 16 38 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -78.59 367.07 -0.73 -79.31 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.49 Total: 15.86 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.61 Total: -12.78 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -5.59 Total: -89.82 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.44 kcal Total: -78.59 -0.73 -79.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.612 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds