Wall clock time and date at job start Tue Mar 31 2020 15:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47038 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99810 * 3 2 1 6 6 H 1.48499 * 109.46771 * 149.99780 * 3 2 1 7 7 C 1.38791 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99922 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00465 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00206 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47093 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99761 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99610 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46915 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.47058 * 179.97438 * 15 14 13 17 17 C 1.46896 * 111.00036 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47203 * 180.02562 * 17 16 15 19 19 C 1.38270 * 119.99101 * 270.27514 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99917 * 18 17 16 25 25 H 0.97001 * 119.99948 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47735 * 60.00184 * 10 9 7 27 27 H 1.09003 * 109.47129 * 299.99908 * 10 9 7 28 28 H 0.96998 * 120.00278 * 359.97438 * 13 11 10 29 29 H 1.08997 * 109.47589 * 59.99966 * 14 13 11 30 30 H 1.09003 * 109.47127 * 299.99922 * 14 13 11 31 31 H 1.09002 * 109.46911 * 60.00142 * 15 14 13 32 32 H 1.08994 * 109.47503 * 299.99979 * 15 14 13 33 33 H 1.00901 * 111.00004 * 303.95503 * 16 15 14 34 34 H 1.08998 * 109.47506 * 59.99841 * 17 16 15 35 35 H 1.09000 * 109.47057 * 299.99741 * 17 16 15 36 36 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 38 38 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 39 39 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0008 14 6 2.3303 -7.7150 0.0008 15 6 3.5023 -8.6985 -0.0004 16 7 2.9872 -10.0743 0.0003 17 6 4.0869 -11.0482 -0.0002 18 6 3.5209 -12.4449 -0.0001 19 6 3.2564 -13.0834 1.1975 20 6 2.7428 -14.3666 1.1984 21 6 2.4823 -15.0080 0.0019 22 6 2.7413 -14.3675 -1.1965 23 17 2.4151 -15.1726 -2.6996 24 6 3.2610 -13.0851 -1.1969 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7314 0.8905 27 1 3.1244 -3.7313 -0.8895 28 1 3.8008 -6.1835 -0.0003 29 1 1.7213 -7.8751 -0.8889 30 1 1.7220 -7.8752 0.8910 31 1 4.1116 -8.5387 0.8892 32 1 4.1103 -8.5383 -0.8907 33 1 2.3685 -10.2283 0.7823 34 1 4.7001 -10.9042 0.8893 35 1 4.6989 -10.9047 -0.8906 36 1 3.4551 -12.5808 2.1325 37 1 2.5405 -14.8666 2.1341 38 1 2.0770 -16.0090 0.0027 39 1 3.4638 -12.5847 -2.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:32 Heat of formation + Delta-G solvation = -25.420614 kcal Electronic energy + Delta-G solvation = -20912.445206 eV Core-core repulsion = 17392.569519 eV Total energy + Delta-G solvation = -3519.875687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95978 -39.18839 -37.20217 -36.62363 -34.44633 -32.43100 -32.11701 -31.20256 -29.91252 -27.85134 -25.53198 -25.04933 -23.18078 -22.38954 -21.74652 -20.36847 -17.90936 -17.53178 -16.67607 -16.31338 -16.16322 -15.89372 -15.74930 -15.05244 -14.86965 -14.79818 -14.33693 -14.18658 -13.92330 -13.64304 -13.50425 -13.10871 -12.91874 -12.54954 -12.25911 -11.99959 -11.89662 -11.82594 -11.71705 -11.47251 -11.21307 -11.06463 -11.02615 -10.76524 -9.82048 -9.48737 -9.39108 -9.20543 -9.07284 -8.91177 -8.88754 -8.23670 -6.50159 -6.21716 -3.92411 0.64877 0.77283 1.70351 2.91413 3.09587 3.12105 3.22261 3.27616 3.31247 3.61177 4.06633 4.20184 4.20441 4.33251 4.54538 4.59458 4.71311 4.77253 4.84702 4.95686 5.08139 5.13418 5.16240 5.20210 5.30567 5.41019 5.60463 5.73161 5.75138 5.81826 5.87605 5.90049 5.98045 6.13099 6.27973 6.43834 6.60007 6.87273 7.59311 7.68176 8.35010 8.60464 9.23526 10.85712 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.034382 B = 0.001477 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.193718 B =18955.044145 C =19180.218747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.681 5.681 17 C 0.099 3.901 18 C -0.071 4.071 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.111 4.111 22 C -0.035 4.035 23 Cl -0.071 7.071 24 C -0.087 4.087 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.397 0.603 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.347 0.653 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.460 -30.925 1.192 33.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.313 5.313 17 C -0.029 4.029 18 C -0.072 4.072 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.062 4.062 23 Cl -0.042 7.042 24 C -0.106 4.106 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.231 0.769 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.169 -31.233 0.375 32.553 hybrid contribution 2.695 1.279 0.770 3.081 sum 11.864 -29.953 1.145 32.238 Atomic orbital electron populations 1.70020 1.05952 1.27460 1.46825 1.24992 0.95029 0.99029 0.94533 0.86163 0.79388 0.81564 0.78350 1.20265 1.20747 1.19719 1.22870 0.94914 0.91670 1.58989 0.90922 1.85414 1.04908 0.96313 1.96717 1.23529 1.06588 0.95337 1.04931 1.20299 0.86500 0.86230 0.75161 1.90710 1.15365 1.85567 1.47312 1.45895 1.09945 1.05419 1.78207 1.21129 0.95662 0.80351 1.03064 1.22120 0.96688 0.87747 1.01442 1.60349 1.18476 1.01705 1.50746 1.20879 0.92512 0.87530 1.02005 1.19713 0.99290 0.95686 0.92513 1.21192 0.98684 0.95103 0.97800 1.21100 0.98791 0.94949 0.97717 1.21096 1.00401 1.00631 0.90856 1.20954 1.03469 0.94394 0.87359 1.98385 1.94071 1.79436 1.32291 1.20961 0.98063 0.92606 0.98994 0.92174 0.89236 0.89175 0.76903 0.90615 0.91783 0.94369 0.90090 0.83501 0.93702 0.89632 0.85511 0.84988 0.84979 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.87 7.85 -10.98 -0.09 9.78 16 12 O -0.52 -11.80 15.86 5.56 0.09 -11.71 16 13 N -0.74 -9.51 5.56 -60.29 -0.33 -9.84 16 14 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 15 C 0.05 0.37 5.80 -3.82 -0.02 0.35 16 16 N -0.68 -5.02 6.49 -115.06 -0.75 -5.76 16 17 C 0.10 0.59 5.81 -4.98 -0.03 0.56 16 18 C -0.07 -0.47 5.39 -104.63 -0.56 -1.04 16 19 C -0.11 -0.63 9.70 -39.58 -0.38 -1.02 16 20 C -0.11 -0.60 10.05 -39.59 -0.40 -0.99 16 21 C -0.11 -0.71 9.83 -39.55 -0.39 -1.10 16 22 C -0.04 -0.27 6.32 -39.50 -0.25 -0.52 16 23 Cl -0.07 -0.55 28.96 -51.86 -1.50 -2.05 16 24 C -0.09 -0.65 9.49 -39.55 -0.38 -1.02 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 27 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 28 H 0.40 3.82 8.47 -40.82 -0.35 3.48 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.35 2.43 8.72 -39.29 -0.34 2.09 16 34 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 35 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -34.65 369.41 -10.83 -45.49 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.30 Total: 0.71 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.10 Total: -9.45 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.35 Total: -41.04 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.65 -10.83 -45.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.065 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds