Wall clock time and date at job start Tue Mar 31 2020 15:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47038 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.47328 * 29.99810 * 3 2 1 6 6 H 1.48499 * 109.46771 * 149.99780 * 3 2 1 7 7 C 1.38791 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99922 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00465 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00206 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47093 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99761 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99610 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46915 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.47058 * 179.97438 * 15 14 13 17 17 C 1.46896 * 111.00036 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47203 * 180.02562 * 17 16 15 19 19 C 1.38270 * 119.99101 * 270.27514 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99917 * 18 17 16 25 25 H 0.97001 * 119.99948 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47735 * 60.00184 * 10 9 7 27 27 H 1.09003 * 109.47129 * 299.99908 * 10 9 7 28 28 H 0.96998 * 120.00278 * 359.97438 * 13 11 10 29 29 H 1.08997 * 109.47589 * 59.99966 * 14 13 11 30 30 H 1.09003 * 109.47127 * 299.99922 * 14 13 11 31 31 H 1.09002 * 109.46911 * 60.00142 * 15 14 13 32 32 H 1.08994 * 109.47503 * 299.99979 * 15 14 13 33 33 H 1.00901 * 111.00004 * 303.95503 * 16 15 14 34 34 H 1.08998 * 109.47506 * 59.99841 * 17 16 15 35 35 H 1.09000 * 109.47057 * 299.99741 * 17 16 15 36 36 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 38 38 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 39 39 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0008 14 6 2.3303 -7.7150 0.0008 15 6 3.5023 -8.6985 -0.0004 16 7 2.9872 -10.0743 0.0003 17 6 4.0869 -11.0482 -0.0002 18 6 3.5209 -12.4449 -0.0001 19 6 3.2564 -13.0834 1.1975 20 6 2.7428 -14.3666 1.1984 21 6 2.4823 -15.0080 0.0019 22 6 2.7413 -14.3675 -1.1965 23 17 2.4151 -15.1726 -2.6996 24 6 3.2610 -13.0851 -1.1969 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7314 0.8905 27 1 3.1244 -3.7313 -0.8895 28 1 3.8008 -6.1835 -0.0003 29 1 1.7213 -7.8751 -0.8889 30 1 1.7220 -7.8752 0.8910 31 1 4.1116 -8.5387 0.8892 32 1 4.1103 -8.5383 -0.8907 33 1 2.3685 -10.2283 0.7823 34 1 4.7001 -10.9042 0.8893 35 1 4.6989 -10.9047 -0.8906 36 1 3.4551 -12.5808 2.1325 37 1 2.5405 -14.8666 2.1341 38 1 2.0770 -16.0090 0.0027 39 1 3.4638 -12.5847 -2.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:31 Heat of formation + Delta-G solvation = -49.554584 kcal Electronic energy + Delta-G solvation = -20913.491733 eV Core-core repulsion = 17392.569519 eV Total energy + Delta-G solvation = -3520.922214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.64301 -40.37888 -37.84582 -37.27128 -35.51461 -34.57658 -32.82593 -31.68787 -31.18384 -28.82217 -27.63659 -25.73930 -23.64697 -23.14904 -22.25731 -21.74775 -19.83913 -18.13430 -17.79062 -17.30230 -17.15271 -16.87049 -16.61985 -16.47469 -16.01127 -15.96691 -15.32355 -15.16948 -14.70192 -14.60990 -14.43884 -14.25879 -14.10082 -13.54226 -13.41942 -13.15773 -12.88762 -12.72665 -12.59869 -12.50936 -12.36651 -12.32015 -12.23471 -11.75000 -11.70563 -11.13568 -10.99670 -10.26575 -10.13245 -9.91495 -9.70695 -9.40559 -8.66196 -8.33846 -6.12163 0.17061 0.29829 1.16849 1.27524 1.43433 1.47838 1.58091 1.61608 2.19974 2.28611 2.64050 3.00387 3.29780 3.44741 3.71691 3.86942 3.90449 4.05446 4.09305 4.16127 4.29830 4.31891 4.32898 4.49389 4.52276 4.53473 4.64537 4.84688 4.93417 4.95700 4.98465 5.27224 5.38124 5.40677 5.42768 5.51713 5.83233 5.94325 6.20631 6.33748 6.51111 7.07441 7.25309 8.75396 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.034382 B = 0.001477 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.193718 B =18955.044145 C =19180.218747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.124 3.876 15 C 0.064 3.936 16 N -0.693 5.693 17 C 0.104 3.896 18 C -0.078 4.078 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.051 4.051 23 Cl -0.081 7.081 24 C -0.102 4.102 25 H 0.271 0.729 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.418 0.582 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.348 0.652 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.212 -31.267 2.138 34.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.365 5.365 14 C -0.001 4.001 15 C -0.066 4.066 16 N -0.326 5.326 17 C -0.024 4.024 18 C -0.078 4.078 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.077 4.077 23 Cl -0.052 7.052 24 C -0.121 4.121 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.255 0.745 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.167 0.833 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.988 -31.619 1.319 33.841 hybrid contribution 1.873 1.226 0.495 2.293 sum 13.861 -30.393 1.814 33.453 Atomic orbital electron populations 1.70189 1.08008 1.28600 1.48017 1.26137 0.95962 1.03356 0.93737 0.84940 0.78206 0.75972 0.78772 1.19352 1.20359 1.18107 1.23216 0.95396 0.91958 1.58858 0.89780 1.85615 1.10727 0.99354 1.97064 1.23369 1.03495 0.94170 1.06967 1.20082 0.86196 0.86749 0.75103 1.90700 1.17584 1.86127 1.50145 1.45588 1.10401 1.04958 1.75596 1.21204 0.97153 0.79909 1.01791 1.21964 0.94938 0.86873 1.02800 1.60309 1.19308 1.01773 1.51174 1.20875 0.92058 0.86646 1.02864 1.19839 0.99416 0.96072 0.92512 1.21478 0.97928 0.95225 0.98268 1.21423 0.97940 0.94982 0.98279 1.21335 1.00352 1.01271 0.90837 1.21117 1.04432 0.94748 0.87437 1.98375 1.94196 1.79605 1.33017 1.21057 0.98778 0.92847 0.99434 0.92013 0.86982 0.87057 0.74475 0.92594 0.92516 0.92430 0.89189 0.83326 0.92070 0.89439 0.83552 0.82683 0.83901 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 11 C 0.53 19.35 7.85 87.66 0.69 20.04 16 12 O -0.57 -26.47 15.86 -3.02 -0.05 -26.51 16 13 N -0.71 -16.76 5.56 -463.05 -2.57 -19.33 16 14 C 0.12 2.59 5.93 86.38 0.51 3.11 16 15 C 0.06 0.79 5.80 86.30 0.50 1.29 16 16 N -0.69 -8.80 6.49 -517.93 -3.36 -12.16 16 17 C 0.10 1.00 5.81 85.56 0.50 1.49 16 18 C -0.08 -0.91 5.39 -19.87 -0.11 -1.02 16 19 C -0.11 -1.03 9.70 22.27 0.22 -0.82 16 20 C -0.11 -0.99 10.05 22.26 0.22 -0.77 16 21 C -0.12 -1.41 9.83 22.29 0.22 -1.19 16 22 C -0.05 -0.76 6.32 22.32 0.14 -0.62 16 23 Cl -0.08 -1.26 28.96 -2.72 -0.08 -1.34 16 24 C -0.10 -1.47 9.49 22.29 0.21 -1.26 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 27 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 28 H 0.42 6.57 8.47 -92.71 -0.79 5.78 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.35 4.23 8.72 -89.69 -0.78 3.45 16 34 H 0.06 0.41 8.09 -2.39 -0.02 0.39 16 35 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -77.77 369.41 -0.75 -78.51 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.49 Total: 14.50 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 4.65 Total: -13.52 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -5.65 Total: -87.25 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -77.77 -0.75 -78.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.960 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds