Wall clock time and date at job start Tue Mar 31 2020 15:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00474 * 2 1 4 4 H 1.48502 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46989 * 300.00167 * 3 2 1 6 6 H 1.48498 * 109.47077 * 60.00150 * 3 2 1 7 7 C 1.38803 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99755 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99905 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99551 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99972 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47171 * 179.97438 * 14 13 11 16 16 N 1.46906 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46656 * 179.97438 * 17 16 15 19 19 C 1.38240 * 119.99061 * 269.72728 * 18 17 16 20 20 C 1.38208 * 120.01343 * 179.73182 * 19 18 17 21 21 C 1.38350 * 119.98647 * 0.53937 * 20 19 18 22 22 Cl 1.73604 * 120.01547 * 179.70763 * 21 20 19 23 23 C 1.38359 * 119.97697 * 359.73517 * 21 20 19 24 24 C 1.38211 * 119.98113 * 359.97438 * 23 21 20 25 25 H 0.97008 * 119.99956 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47122 * 60.00098 * 10 9 7 27 27 H 1.09000 * 109.47045 * 299.99821 * 10 9 7 28 28 H 0.97001 * 120.00062 * 0.02562 * 13 11 10 29 29 H 1.08995 * 109.47879 * 59.99278 * 14 13 11 30 30 H 1.09008 * 109.46699 * 299.99828 * 14 13 11 31 31 H 1.09002 * 109.47142 * 59.99877 * 15 14 13 32 32 H 1.09000 * 109.46991 * 299.99621 * 15 14 13 33 33 H 1.00896 * 111.00309 * 56.04370 * 16 15 14 34 34 H 1.08990 * 109.47358 * 299.99539 * 17 16 15 35 35 H 1.09004 * 109.47457 * 60.00221 * 17 16 15 36 36 H 1.07995 * 119.98954 * 359.97438 * 19 18 17 37 37 H 1.07999 * 120.00733 * 180.27702 * 20 19 18 38 38 H 1.07992 * 120.01122 * 179.97438 * 23 21 20 39 39 H 1.07997 * 119.99581 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9870 -5.3029 -0.0017 12 8 0.7907 -5.5023 -0.0009 13 7 2.8437 -6.3433 -0.0022 14 6 2.3299 -7.7152 -0.0024 15 6 3.5018 -8.6987 -0.0036 16 7 2.9865 -10.0744 -0.0031 17 6 4.0863 -11.0484 -0.0049 18 6 3.5202 -12.4451 -0.0038 19 6 3.2679 -13.0875 1.1941 20 6 2.7436 -14.3662 1.1957 21 6 2.4816 -15.0077 -0.0018 22 17 1.8301 -16.6169 -0.0006 23 6 2.7395 -14.3665 -1.2004 24 6 3.2583 -13.0854 -1.2007 25 1 -0.4850 0.8401 0.0004 26 1 3.1249 -3.7319 0.8875 27 1 3.1235 -3.7311 -0.8925 28 1 3.8005 -6.1837 -0.0025 29 1 1.7209 -7.8751 -0.8921 30 1 1.7215 -7.8754 0.8879 31 1 4.1111 -8.5390 0.8860 32 1 4.1097 -8.5384 -0.8940 33 1 2.3662 -10.2285 -0.7838 34 1 4.6976 -10.9045 -0.8957 35 1 4.7002 -10.9049 0.8843 36 1 3.4770 -12.5885 2.1287 37 1 2.5424 -14.8663 2.1316 38 1 2.5356 -14.8668 -2.1354 39 1 3.4601 -12.5849 -2.1361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:05 Heat of formation + Delta-G solvation = -25.670706 kcal Electronic energy + Delta-G solvation = -20846.826355 eV Core-core repulsion = 17326.939824 eV Total energy + Delta-G solvation = -3519.886531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96047 -39.19400 -37.26832 -36.59536 -34.41463 -32.43529 -31.92680 -31.55871 -29.86669 -27.77855 -25.52392 -24.96093 -23.34647 -22.39695 -21.68323 -20.37439 -17.91439 -17.62950 -16.73049 -16.31626 -16.18372 -15.79242 -15.72448 -15.00806 -14.83864 -14.79556 -14.35939 -14.02491 -13.93673 -13.69290 -13.62396 -13.18775 -13.01416 -12.56005 -12.29957 -12.01750 -11.89891 -11.77219 -11.61123 -11.47893 -11.26723 -11.07581 -11.02545 -10.76404 -9.81410 -9.52810 -9.44823 -9.16889 -9.08494 -8.91542 -8.87654 -8.23666 -6.50613 -6.22362 -3.92909 0.60602 0.81234 1.67868 2.90609 3.08959 3.11772 3.21072 3.27532 3.31715 3.61047 4.08397 4.19680 4.23088 4.29850 4.40909 4.60782 4.71459 4.81675 4.84185 5.04982 5.09072 5.12963 5.17212 5.19562 5.25534 5.45661 5.59962 5.68747 5.73809 5.74841 5.86873 5.89469 6.03465 6.12645 6.28482 6.43373 6.59389 6.86636 7.59215 7.67521 8.34769 8.59853 9.23092 10.85140 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.047629 B = 0.001396 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.738770 B =20051.674573 C =20316.735963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.681 5.681 17 C 0.098 3.902 18 C -0.079 4.079 19 C -0.083 4.083 20 C -0.111 4.111 21 C -0.034 4.034 22 Cl -0.073 7.073 23 C -0.111 4.111 24 C -0.101 4.101 25 H 0.268 0.732 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.397 0.603 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.346 0.654 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.574 -30.696 -0.755 32.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.313 5.313 17 C -0.030 4.030 18 C -0.080 4.080 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.061 4.061 22 Cl -0.044 7.044 23 C -0.130 4.130 24 C -0.120 4.120 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.231 0.769 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.165 0.835 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.259 -31.080 -0.070 32.430 hybrid contribution 2.651 1.207 -0.937 3.060 sum 11.910 -29.873 -1.007 32.175 Atomic orbital electron populations 1.70030 1.05959 1.27354 1.46912 1.24994 0.95022 0.99036 0.94531 0.86114 0.79569 0.81880 0.77907 1.19628 1.20572 1.20553 1.22911 0.94944 0.91647 1.58879 0.90870 1.85420 1.04923 0.96343 1.96712 1.23529 1.06582 0.95327 1.04932 1.20303 0.86504 0.86235 0.75160 1.90713 1.15358 1.85575 1.47315 1.45893 1.09946 1.05420 1.78205 1.21128 0.95665 0.80356 1.03060 1.22121 0.96687 0.87779 1.01427 1.60360 1.18379 1.01691 1.50835 1.20891 0.92510 0.87694 1.01929 1.19879 0.99199 0.95720 0.93159 1.21038 0.97284 0.93572 0.98310 1.21099 0.99610 0.95313 0.96981 1.20987 1.02238 0.87536 0.95327 1.98381 1.84736 1.22342 1.98968 1.21036 0.99763 0.95201 0.96967 1.21045 0.98641 0.94227 0.98060 0.92224 0.89179 0.89229 0.76901 0.91797 0.90617 0.90108 0.94374 0.83511 0.93847 0.89647 0.84762 0.84836 0.84913 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.82 7.85 -10.98 -0.09 9.73 16 12 O -0.52 -11.76 15.86 5.55 0.09 -11.67 16 13 N -0.74 -9.43 5.56 -60.29 -0.33 -9.76 16 14 C 0.12 1.36 5.93 -4.05 -0.02 1.33 16 15 C 0.05 0.37 5.80 -3.82 -0.02 0.34 16 16 N -0.68 -4.87 6.49 -115.05 -0.75 -5.61 16 17 C 0.10 0.56 5.81 -4.97 -0.03 0.53 16 18 C -0.08 -0.50 5.39 -104.61 -0.56 -1.06 16 19 C -0.08 -0.54 9.70 -39.59 -0.38 -0.92 16 20 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 21 C -0.03 -0.25 6.32 -39.50 -0.25 -0.50 16 22 Cl -0.07 -0.53 28.96 -51.86 -1.50 -2.03 16 23 C -0.11 -0.72 9.83 -39.55 -0.39 -1.11 16 24 C -0.10 -0.60 9.70 -39.59 -0.38 -0.99 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 27 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 28 H 0.40 3.78 8.47 -40.82 -0.35 3.44 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.35 2.40 8.72 -39.29 -0.34 2.05 16 34 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16 35 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -34.54 369.41 -10.83 -45.37 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.30 Total: 0.61 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.10 Total: -9.52 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.35 Total: -40.76 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.54 -10.83 -45.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.702 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds