Wall clock time and date at job start Tue Mar 31 2020 15:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00474 * 2 1 4 4 H 1.48502 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46989 * 300.00167 * 3 2 1 6 6 H 1.48498 * 109.47077 * 60.00150 * 3 2 1 7 7 C 1.38803 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99755 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99905 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99551 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99972 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47171 * 179.97438 * 14 13 11 16 16 N 1.46906 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46656 * 179.97438 * 17 16 15 19 19 C 1.38240 * 119.99061 * 269.72728 * 18 17 16 20 20 C 1.38208 * 120.01343 * 179.73182 * 19 18 17 21 21 C 1.38350 * 119.98647 * 0.53937 * 20 19 18 22 22 Cl 1.73604 * 120.01547 * 179.70763 * 21 20 19 23 23 C 1.38359 * 119.97697 * 359.73517 * 21 20 19 24 24 C 1.38211 * 119.98113 * 359.97438 * 23 21 20 25 25 H 0.97008 * 119.99956 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47122 * 60.00098 * 10 9 7 27 27 H 1.09000 * 109.47045 * 299.99821 * 10 9 7 28 28 H 0.97001 * 120.00062 * 0.02562 * 13 11 10 29 29 H 1.08995 * 109.47879 * 59.99278 * 14 13 11 30 30 H 1.09008 * 109.46699 * 299.99828 * 14 13 11 31 31 H 1.09002 * 109.47142 * 59.99877 * 15 14 13 32 32 H 1.09000 * 109.46991 * 299.99621 * 15 14 13 33 33 H 1.00896 * 111.00309 * 56.04370 * 16 15 14 34 34 H 1.08990 * 109.47358 * 299.99539 * 17 16 15 35 35 H 1.09004 * 109.47457 * 60.00221 * 17 16 15 36 36 H 1.07995 * 119.98954 * 359.97438 * 19 18 17 37 37 H 1.07999 * 120.00733 * 180.27702 * 20 19 18 38 38 H 1.07992 * 120.01122 * 179.97438 * 23 21 20 39 39 H 1.07997 * 119.99581 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9870 -5.3029 -0.0017 12 8 0.7907 -5.5023 -0.0009 13 7 2.8437 -6.3433 -0.0022 14 6 2.3299 -7.7152 -0.0024 15 6 3.5018 -8.6987 -0.0036 16 7 2.9865 -10.0744 -0.0031 17 6 4.0863 -11.0484 -0.0049 18 6 3.5202 -12.4451 -0.0038 19 6 3.2679 -13.0875 1.1941 20 6 2.7436 -14.3662 1.1957 21 6 2.4816 -15.0077 -0.0018 22 17 1.8301 -16.6169 -0.0006 23 6 2.7395 -14.3665 -1.2004 24 6 3.2583 -13.0854 -1.2007 25 1 -0.4850 0.8401 0.0004 26 1 3.1249 -3.7319 0.8875 27 1 3.1235 -3.7311 -0.8925 28 1 3.8005 -6.1837 -0.0025 29 1 1.7209 -7.8751 -0.8921 30 1 1.7215 -7.8754 0.8879 31 1 4.1111 -8.5390 0.8860 32 1 4.1097 -8.5384 -0.8940 33 1 2.3662 -10.2285 -0.7838 34 1 4.6976 -10.9045 -0.8957 35 1 4.7002 -10.9049 0.8843 36 1 3.4770 -12.5885 2.1287 37 1 2.5424 -14.8663 2.1316 38 1 2.5356 -14.8668 -2.1354 39 1 3.4601 -12.5849 -2.1361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:04 Heat of formation + Delta-G solvation = -49.623044 kcal Electronic energy + Delta-G solvation = -20847.865007 eV Core-core repulsion = 17326.939824 eV Total energy + Delta-G solvation = -3520.925183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63703 -40.37687 -37.87849 -37.24421 -35.47523 -34.57552 -32.66213 -32.01400 -31.13081 -28.73714 -27.63119 -25.62023 -23.80844 -23.13688 -22.19246 -21.73928 -19.83727 -18.19134 -17.82048 -17.36710 -17.14562 -16.87166 -16.62111 -16.37908 -15.99392 -15.91290 -15.25551 -15.12572 -14.67235 -14.51046 -14.43244 -14.31868 -14.16639 -13.68697 -13.46468 -13.14999 -12.91060 -12.76544 -12.59504 -12.51118 -12.29314 -12.27077 -12.16325 -11.75954 -11.69818 -11.15078 -10.99135 -10.25859 -10.12664 -9.99315 -9.67420 -9.37765 -8.65966 -8.33951 -6.12033 0.11703 0.34797 1.16308 1.27899 1.42428 1.48148 1.59063 1.62001 2.20203 2.28558 2.63213 3.00515 3.30389 3.46475 3.77601 3.83857 3.90058 3.97447 4.06920 4.14134 4.29342 4.32972 4.38127 4.51839 4.52730 4.62478 4.67497 4.81556 4.94413 4.96548 5.02709 5.23546 5.27749 5.41404 5.43273 5.57275 5.83104 5.95248 6.20990 6.33876 6.51623 7.07606 7.25808 8.75573 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.047629 B = 0.001396 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.738770 B =20051.674573 C =20316.735963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.123 3.877 15 C 0.063 3.937 16 N -0.692 5.692 17 C 0.103 3.897 18 C -0.084 4.084 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.048 4.048 22 Cl -0.079 7.079 23 C -0.119 4.119 24 C -0.103 4.103 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.418 0.582 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.347 0.653 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.471 -30.744 -1.021 33.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.365 5.365 14 C -0.001 4.001 15 C -0.066 4.066 16 N -0.324 5.324 17 C -0.025 4.025 18 C -0.085 4.085 19 C -0.110 4.110 20 C -0.140 4.140 21 C -0.075 4.075 22 Cl -0.051 7.051 23 C -0.138 4.138 24 C -0.121 4.121 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.255 0.745 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.223 -31.173 -0.336 33.485 hybrid contribution 1.787 1.073 -0.853 2.252 sum 14.010 -30.100 -1.189 33.222 Atomic orbital electron populations 1.70195 1.08018 1.28534 1.48102 1.26132 0.95946 1.03340 0.93740 0.84896 0.78652 0.76305 0.78026 1.17920 1.19996 1.20000 1.23247 0.95388 0.91941 1.58740 0.89786 1.85621 1.10752 0.99379 1.97058 1.23369 1.03477 0.94167 1.06968 1.20084 0.86201 0.86757 0.75109 1.90703 1.17585 1.86136 1.50158 1.45586 1.10397 1.04966 1.75579 1.21209 0.97184 0.79907 1.01785 1.21967 0.94912 0.86908 1.02804 1.60332 1.19170 1.01748 1.51178 1.20895 0.92040 0.86707 1.02892 1.20030 0.99120 0.96128 0.93194 1.21231 0.97213 0.93549 0.98980 1.21267 0.99769 0.95656 0.97266 1.21160 1.02896 0.87509 0.95934 1.98374 1.84881 1.22812 1.98993 1.21246 0.99756 0.95610 0.97187 1.21278 0.98034 0.94007 0.98796 0.92017 0.87039 0.86997 0.74470 0.92653 0.92479 0.89021 0.92583 0.83459 0.92484 0.89008 0.83830 0.84099 0.83934 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.89 9.50 67.96 0.65 -30.25 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 11 C 0.53 19.19 7.85 87.66 0.69 19.88 16 12 O -0.57 -26.33 15.86 -3.04 -0.05 -26.38 16 13 N -0.71 -16.49 5.56 -463.06 -2.57 -19.06 16 14 C 0.12 2.53 5.93 86.38 0.51 3.04 16 15 C 0.06 0.75 5.80 86.30 0.50 1.25 16 16 N -0.69 -8.25 6.49 -517.91 -3.36 -11.61 16 17 C 0.10 0.89 5.81 85.56 0.50 1.39 16 18 C -0.08 -0.91 5.39 -19.86 -0.11 -1.02 16 19 C -0.09 -1.07 9.70 22.26 0.22 -0.85 16 20 C -0.12 -1.55 9.83 22.29 0.22 -1.33 16 21 C -0.05 -0.67 6.32 22.33 0.14 -0.53 16 22 Cl -0.08 -1.13 28.96 -2.72 -0.08 -1.21 16 23 C -0.12 -1.43 9.83 22.29 0.22 -1.21 16 24 C -0.10 -1.05 9.70 22.27 0.22 -0.83 16 25 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 26 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 27 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 28 H 0.42 6.41 8.47 -92.71 -0.79 5.63 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.35 4.11 8.72 -89.70 -0.78 3.33 16 34 H 0.06 0.36 8.09 -2.39 -0.02 0.34 16 35 H 0.09 0.70 8.08 -2.38 -0.02 0.68 16 36 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -77.15 369.41 -0.75 -77.90 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -0.49 Total: 14.27 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 4.65 Total: -13.77 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -5.65 Total: -86.32 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -77.15 -0.75 -77.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.273 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds