Wall clock time and date at job start Tue Mar 31 2020 15:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48494 * 109.47452 * 270.00457 * 3 2 1 5 5 H 1.48504 * 109.46786 * 30.00526 * 3 2 1 6 6 H 1.48505 * 109.47191 * 150.00483 * 3 2 1 7 7 C 1.37881 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99780 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00255 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97659 * 124.99957 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73677 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26438 * 12 11 10 14 14 N 1.40087 * 125.97805 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99919 * 0.02562 * 14 13 12 16 16 O 1.21592 * 119.99765 * 0.02562 * 15 14 13 17 17 C 1.47639 * 120.00097 * 179.97438 * 15 14 13 18 18 C 1.40168 * 119.85245 * 359.72784 * 17 15 14 19 19 C 1.36217 * 120.07466 * 179.73267 * 18 17 15 20 20 C 1.39585 * 120.43324 * 0.52349 * 19 18 17 21 21 S 1.76149 * 131.53104 * 179.75670 * 20 19 18 22 22 C 1.70627 * 90.85717 * 179.97438 * 21 20 19 23 23 N 1.27852 * 111.58887 * 359.97438 * 22 21 20 24 24 C 1.34746 * 117.84019 * 359.97438 * 23 22 21 25 25 C 1.38725 * 119.85460 * 180.02562 * 17 15 14 26 26 N 1.31233 * 108.04440 * 359.97438 * 13 12 11 27 27 H 0.97002 * 120.00413 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46894 * 60.00066 * 9 7 2 29 29 H 1.09003 * 109.46917 * 300.00215 * 9 7 2 30 30 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 31 31 H 1.08002 * 126.06677 * 180.24590 * 12 11 10 32 32 H 0.96998 * 120.00040 * 179.97438 * 14 13 12 33 33 H 1.08000 * 119.96157 * 0.02562 * 18 17 15 34 34 H 1.07993 * 119.78722 * 180.27644 * 19 18 17 35 35 H 1.08002 * 124.20659 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.98108 * 359.97438 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.8545 -3.1133 -0.8976 12 6 5.0603 -4.4041 -0.5508 13 6 4.2975 -4.6684 0.5983 14 7 4.2299 -5.8916 1.2778 15 6 4.9403 -6.9482 0.8358 16 8 5.6403 -6.8396 -0.1525 17 6 4.8695 -8.2371 1.5523 18 6 4.0669 -8.3569 2.6952 19 6 3.9940 -9.5455 3.3566 20 6 4.7237 -10.6487 2.9107 21 16 4.8517 -12.2925 3.5308 22 6 5.9345 -12.7077 2.2793 23 7 6.1575 -11.7172 1.5023 24 6 5.5359 -10.5527 1.7729 25 6 5.6025 -9.3226 1.0951 26 7 3.6591 -3.5691 0.9241 27 1 -0.4851 0.8400 0.0004 28 1 3.8751 -0.6804 0.8888 29 1 3.8745 -0.6799 -0.8911 30 1 5.2991 -2.6023 -1.7388 31 1 5.6979 -5.1071 -1.0662 32 1 3.6724 -5.9778 2.0669 33 1 3.5020 -7.5072 3.0491 34 1 3.3707 -9.6339 4.2341 35 1 6.3760 -13.6859 2.1580 36 1 6.2227 -9.2234 0.2164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126326896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:06 Heat of formation + Delta-G solvation = 120.769882 kcal Electronic energy + Delta-G solvation = -23189.625139 eV Core-core repulsion = 19574.981254 eV Total energy + Delta-G solvation = -3614.643885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15701 -40.59470 -39.35934 -37.02209 -34.97680 -33.34725 -31.79386 -31.33287 -30.36671 -29.43638 -27.26003 -25.65924 -24.59349 -22.71701 -22.47679 -21.42433 -20.28106 -19.68700 -19.03861 -17.44576 -17.14799 -16.83583 -16.62120 -16.17976 -15.49017 -15.40694 -15.01393 -14.79133 -14.37191 -14.34772 -14.16312 -13.66723 -13.53712 -13.08041 -12.62573 -12.51989 -12.37511 -12.30366 -12.12546 -11.48798 -11.20307 -10.80601 -10.71520 -10.56845 -10.17671 -10.13425 -10.04135 -9.79878 -9.56019 -9.26687 -8.78707 -8.61708 -8.25121 -7.58590 -6.25455 -4.27989 -0.08993 0.32172 0.75040 1.21697 1.77818 2.36746 2.54856 2.78917 3.14113 3.20988 3.22522 3.29133 3.47463 3.72026 3.74971 4.10217 4.21118 4.39473 4.50100 4.66106 4.72334 4.96911 5.02348 5.33568 5.43173 5.60017 5.61988 5.63853 5.74595 6.06056 6.10277 6.34460 6.39139 6.51001 6.62852 7.08202 7.20943 7.25882 7.48449 7.76794 8.07495 8.30598 8.49706 8.84027 9.29306 10.87159 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.032712 B = 0.002089 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.756821 B =13402.383316 C =14040.626770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.282 4.282 13 C 0.259 3.741 14 N -0.623 5.623 15 C 0.567 3.433 16 O -0.509 6.509 17 C -0.114 4.114 18 C -0.070 4.070 19 C -0.074 4.074 20 C -0.162 4.162 21 S 0.105 5.895 22 C 0.065 3.935 23 N -0.456 5.456 24 C 0.068 3.932 25 C 0.008 3.992 26 N -0.294 5.294 27 H 0.268 0.732 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.411 0.589 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.207 0.793 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.076 -23.398 7.699 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.099 5.099 11 C -0.097 4.097 12 C -0.313 4.313 13 C 0.005 3.995 14 N -0.270 5.270 15 C 0.354 3.646 16 O -0.383 6.383 17 C -0.121 4.121 18 C -0.092 4.092 19 C -0.097 4.097 20 C -0.282 4.282 21 S 0.359 5.641 22 C -0.240 4.240 23 N -0.168 5.168 24 C -0.051 4.051 25 C -0.014 4.014 26 N -0.125 5.125 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.248 0.752 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.223 0.777 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.552 -23.240 8.161 26.796 hybrid contribution 0.563 1.195 -0.639 1.467 sum 11.115 -22.045 7.522 25.809 Atomic orbital electron populations 1.69866 1.06157 1.27327 1.49065 1.24835 0.94877 0.98811 0.94247 0.86907 0.80431 0.83827 0.78940 1.19694 1.20522 1.18861 1.21098 0.87744 0.95717 1.52764 0.89626 1.20069 0.97503 0.72908 0.98270 1.48635 1.32361 1.10206 1.18686 1.22572 0.95864 0.94649 0.96630 1.21558 1.11345 0.96926 1.01511 1.19036 0.99144 0.86493 0.94783 1.42254 1.46765 1.07596 1.30402 1.17889 0.79769 0.82798 0.84181 1.90745 1.39140 1.83238 1.25208 1.19553 1.01092 0.93809 0.97597 1.21065 0.96760 0.97833 0.93562 1.19991 0.98849 0.90231 1.00601 1.24131 1.04288 0.99138 1.00635 1.84096 1.45762 1.02598 1.31598 1.28149 0.99600 1.02171 0.94112 1.66213 1.23259 0.98775 1.28575 1.19074 0.97598 0.93226 0.95232 1.20741 0.95181 0.87567 0.97909 1.77397 1.23416 0.95558 1.16117 0.92156 0.93953 0.93265 0.81258 0.81997 0.75184 0.83904 0.84212 0.77699 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 19.90 27.47 -169.99 -4.67 15.23 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 7 C -0.54 -14.91 9.79 -34.44 -0.34 -15.24 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 C 0.23 5.39 5.33 -5.19 -0.03 5.37 16 10 N -0.32 -7.05 3.67 -62.56 -0.23 -7.28 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.37 9.60 -39.83 -0.38 -5.75 16 13 C 0.26 5.02 8.11 -154.44 -1.25 3.77 16 14 N -0.62 -9.31 5.40 -12.05 -0.06 -9.37 16 15 C 0.57 8.10 7.73 -12.42 -0.10 8.00 16 16 O -0.51 -8.66 13.42 5.28 0.07 -8.59 16 17 C -0.11 -1.27 5.86 -105.16 -0.62 -1.89 16 18 C -0.07 -0.59 9.47 -39.58 -0.37 -0.97 16 19 C -0.07 -0.58 9.99 -39.81 -0.40 -0.97 16 20 C -0.16 -1.46 6.57 -38.37 -0.25 -1.72 16 21 S 0.11 0.67 23.17 -107.50 -2.49 -1.82 16 22 C 0.07 0.44 12.09 51.11 0.62 1.06 16 23 N -0.46 -4.71 10.57 -13.02 -0.14 -4.85 16 24 C 0.07 0.74 6.99 -84.98 -0.59 0.15 16 25 C 0.01 0.09 9.65 -38.51 -0.37 -0.29 16 26 N -0.29 -6.58 12.42 31.43 0.39 -6.19 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 29 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 30 H 0.17 2.51 8.06 -52.49 -0.42 2.08 16 31 H 0.16 2.97 5.91 -52.49 -0.31 2.66 16 32 H 0.41 4.89 6.82 -40.82 -0.28 4.61 16 33 H 0.14 0.89 6.37 -52.49 -0.33 0.56 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.15 1.78 7.60 -52.48 -0.40 1.38 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -35.02 330.84 -8.69 -43.71 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -2.94 Total: 5.41 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.38 Total: -5.67 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.73 Total: -53.25 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.67 Total: 15.23 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.49 Total: -1.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.02 -8.69 -43.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126326896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.479 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds