Wall clock time and date at job start Tue Mar 31 2020 15:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48494 * 109.47452 * 270.00457 * 3 2 1 5 5 H 1.48504 * 109.46786 * 30.00526 * 3 2 1 6 6 H 1.48505 * 109.47191 * 150.00483 * 3 2 1 7 7 C 1.37881 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99780 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00255 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97659 * 124.99957 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73677 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26438 * 12 11 10 14 14 N 1.40087 * 125.97805 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99919 * 0.02562 * 14 13 12 16 16 O 1.21592 * 119.99765 * 0.02562 * 15 14 13 17 17 C 1.47639 * 120.00097 * 179.97438 * 15 14 13 18 18 C 1.40168 * 119.85245 * 359.72784 * 17 15 14 19 19 C 1.36217 * 120.07466 * 179.73267 * 18 17 15 20 20 C 1.39585 * 120.43324 * 0.52349 * 19 18 17 21 21 S 1.76149 * 131.53104 * 179.75670 * 20 19 18 22 22 C 1.70627 * 90.85717 * 179.97438 * 21 20 19 23 23 N 1.27852 * 111.58887 * 359.97438 * 22 21 20 24 24 C 1.34746 * 117.84019 * 359.97438 * 23 22 21 25 25 C 1.38725 * 119.85460 * 180.02562 * 17 15 14 26 26 N 1.31233 * 108.04440 * 359.97438 * 13 12 11 27 27 H 0.97002 * 120.00413 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46894 * 60.00066 * 9 7 2 29 29 H 1.09003 * 109.46917 * 300.00215 * 9 7 2 30 30 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 31 31 H 1.08002 * 126.06677 * 180.24590 * 12 11 10 32 32 H 0.96998 * 120.00040 * 179.97438 * 14 13 12 33 33 H 1.08000 * 119.96157 * 0.02562 * 18 17 15 34 34 H 1.07993 * 119.78722 * 180.27644 * 19 18 17 35 35 H 1.08002 * 124.20659 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.98108 * 359.97438 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.8545 -3.1133 -0.8976 12 6 5.0603 -4.4041 -0.5508 13 6 4.2975 -4.6684 0.5983 14 7 4.2299 -5.8916 1.2778 15 6 4.9403 -6.9482 0.8358 16 8 5.6403 -6.8396 -0.1525 17 6 4.8695 -8.2371 1.5523 18 6 4.0669 -8.3569 2.6952 19 6 3.9940 -9.5455 3.3566 20 6 4.7237 -10.6487 2.9107 21 16 4.8517 -12.2925 3.5308 22 6 5.9345 -12.7077 2.2793 23 7 6.1575 -11.7172 1.5023 24 6 5.5359 -10.5527 1.7729 25 6 5.6025 -9.3226 1.0951 26 7 3.6591 -3.5691 0.9241 27 1 -0.4851 0.8400 0.0004 28 1 3.8751 -0.6804 0.8888 29 1 3.8745 -0.6799 -0.8911 30 1 5.2991 -2.6023 -1.7388 31 1 5.6979 -5.1071 -1.0662 32 1 3.6724 -5.9778 2.0669 33 1 3.5020 -7.5072 3.0491 34 1 3.3707 -9.6339 4.2341 35 1 6.3760 -13.6859 2.1580 36 1 6.2227 -9.2234 0.2164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126326896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:05 Heat of formation + Delta-G solvation = 96.630736 kcal Electronic energy + Delta-G solvation = -23190.671891 eV Core-core repulsion = 19574.981254 eV Total energy + Delta-G solvation = -3615.690637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37007 -41.62686 -40.50175 -37.78319 -36.37656 -35.23582 -33.25937 -32.36316 -31.28595 -30.90530 -29.00789 -26.39632 -25.62271 -24.26352 -23.37928 -22.63861 -21.73408 -20.93174 -19.79051 -19.10780 -18.48814 -18.08612 -17.45944 -17.33016 -16.67156 -16.66664 -16.17226 -15.87461 -15.72109 -15.30496 -15.04536 -14.94315 -14.76063 -14.38417 -14.19920 -13.90446 -13.87309 -13.14164 -13.07391 -12.94826 -12.53459 -12.34079 -12.16035 -11.83351 -11.66839 -11.49939 -11.26692 -11.10409 -10.86382 -10.73418 -9.96573 -9.79995 -9.26841 -9.10709 -8.36802 -6.47051 -0.75308 -0.47574 0.18073 0.62920 0.93277 1.18323 1.24435 1.37697 1.41445 1.50443 1.54701 2.13319 2.22750 2.29641 2.62828 2.94278 2.95996 3.39648 3.45737 3.83548 3.91681 4.02724 4.08766 4.18751 4.41852 4.58068 4.61735 4.73538 4.85609 4.88342 4.92758 4.93519 4.99440 5.13745 5.24850 5.39173 5.82621 5.99530 6.14132 6.39761 6.47977 6.58675 6.86208 7.00360 7.15778 8.80147 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.032712 B = 0.002089 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.756821 B =13402.383316 C =14040.626770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.027 0.973 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.063 3.937 12 C -0.295 4.295 13 C 0.264 3.736 14 N -0.616 5.616 15 C 0.570 3.430 16 O -0.540 6.540 17 C -0.121 4.121 18 C -0.071 4.071 19 C -0.065 4.065 20 C -0.181 4.181 21 S 0.164 5.836 22 C 0.071 3.929 23 N -0.499 5.499 24 C 0.051 3.949 25 C -0.009 4.009 26 N -0.342 5.342 27 H 0.272 0.728 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.212 0.788 31 H 0.168 0.832 32 H 0.424 0.576 33 H 0.164 0.836 34 H 0.173 0.827 35 H 0.243 0.757 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -24.105 8.858 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.085 4.085 12 C -0.326 4.326 13 C 0.010 3.990 14 N -0.266 5.266 15 C 0.359 3.641 16 O -0.417 6.417 17 C -0.127 4.127 18 C -0.094 4.094 19 C -0.087 4.087 20 C -0.301 4.301 21 S 0.420 5.580 22 C -0.233 4.233 23 N -0.212 5.212 24 C -0.069 4.069 25 C -0.030 4.030 26 N -0.173 5.173 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.229 0.771 31 H 0.186 0.814 32 H 0.264 0.736 33 H 0.182 0.818 34 H 0.190 0.810 35 H 0.259 0.741 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.997 -24.004 9.345 28.416 hybrid contribution 0.092 1.075 -0.939 1.430 sum 12.090 -22.929 8.407 27.250 Atomic orbital electron populations 1.70044 1.08552 1.28792 1.50646 1.25920 0.95776 1.03535 0.93263 0.85621 0.79526 0.77235 0.80023 1.17834 1.20674 1.16184 1.21221 0.90462 0.93747 1.53023 0.95451 1.19915 0.94205 0.74254 0.99745 1.48534 1.33888 1.10049 1.19941 1.23258 0.94214 0.94589 0.96487 1.21776 1.11737 0.97390 1.01712 1.19392 0.97763 0.87095 0.94783 1.42335 1.47181 1.06400 1.30681 1.18401 0.78581 0.83371 0.83735 1.90710 1.40410 1.83823 1.26722 1.19282 1.02783 0.91918 0.98733 1.21267 0.96341 0.99171 0.92597 1.20360 0.98126 0.89258 1.00928 1.24533 1.03886 1.01260 1.00387 1.83921 1.44341 0.99760 1.30011 1.28872 0.98545 1.02706 0.93184 1.66247 1.25025 0.99397 1.30536 1.19153 0.98440 0.93267 0.96002 1.20665 0.95753 0.88529 0.98070 1.77314 1.25484 0.96706 1.17763 0.91891 0.93494 0.90014 0.77128 0.81444 0.73609 0.81832 0.80969 0.74069 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.96 40.34 27.47 68.60 1.88 42.23 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 7 C -0.55 -31.27 9.79 25.60 0.25 -31.02 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.24 10.91 5.33 85.63 0.46 11.36 16 10 N -0.34 -15.19 3.67 -351.85 -1.29 -16.48 16 11 C 0.06 2.29 11.43 83.52 0.96 3.25 16 12 C -0.30 -11.24 9.60 22.11 0.21 -11.02 16 13 C 0.26 10.44 8.11 133.35 1.08 11.53 16 14 N -0.62 -18.78 5.40 -310.28 -1.67 -20.45 16 15 C 0.57 16.76 7.73 86.73 0.67 17.43 16 16 O -0.54 -19.10 13.42 -4.01 -0.05 -19.15 16 17 C -0.12 -2.74 5.86 -20.21 -0.12 -2.86 16 18 C -0.07 -1.13 9.47 22.27 0.21 -0.92 16 19 C -0.06 -0.86 9.99 22.12 0.22 -0.64 16 20 C -0.18 -2.94 6.57 23.05 0.15 -2.79 16 21 S 0.16 1.60 23.17 -56.49 -1.31 0.29 16 22 C 0.07 0.80 12.09 130.82 1.58 2.38 16 23 N -0.50 -9.95 10.57 -194.90 -2.06 -12.01 16 24 C 0.05 1.10 6.99 39.73 0.28 1.37 16 25 C -0.01 -0.20 9.65 22.97 0.22 0.02 16 26 N -0.34 -15.68 12.42 -54.48 -0.68 -16.35 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 29 H 0.08 3.20 7.50 -2.39 -0.02 3.19 16 30 H 0.21 5.63 8.06 -2.91 -0.02 5.61 16 31 H 0.17 6.19 5.91 -2.91 -0.02 6.17 16 32 H 0.42 10.16 6.82 -92.71 -0.63 9.53 16 33 H 0.16 1.79 6.37 -2.91 -0.02 1.77 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.24 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.14 3.55 7.60 -2.91 -0.02 3.53 16 Total: -1.00 -81.18 330.84 2.23 -78.95 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.48 Total: 21.00 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 6.64 Total: -0.67 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -5.40 Total: -122.65 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.88 Total: 42.23 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.31 Total: 0.29 kcal Total: -81.18 2.23 -78.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126326896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.582 kcal (2) G-P(sol) polarization free energy of solvation -81.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds