Wall clock time and date at job start Tue Mar 31 2020 15:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35234 * 107.87021 * 179.89618 * 11 10 9 13 13 C 1.40430 * 107.86192 * 0.36722 * 12 11 10 14 14 N 1.40076 * 125.97464 * 179.81332 * 13 12 11 15 15 C 1.34779 * 120.00166 * 359.97438 * 14 13 12 16 16 O 1.21637 * 119.99544 * 0.02562 * 15 14 13 17 17 C 1.47352 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.29691 * 121.82857 * 0.02562 * 17 15 14 19 19 S 1.56004 * 111.74012 * 179.97438 * 18 17 15 20 20 C 1.76253 * 97.56301 * 0.02562 * 19 18 17 21 21 C 1.38697 * 134.18356 * 180.02562 * 20 19 18 22 22 C 1.36813 * 119.62498 * 179.97438 * 21 20 19 23 23 C 1.38902 * 120.30914 * 359.97438 * 22 21 20 24 24 C 1.36330 * 121.03373 * 0.02562 * 23 22 21 25 25 C 1.40422 * 119.96340 * 359.72921 * 24 23 22 26 26 N 1.31236 * 108.04826 * 359.77352 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08005 * 126.06211 * 0.02562 * 11 10 9 31 31 H 1.07996 * 126.07052 * 180.13890 * 12 11 10 32 32 H 0.97002 * 120.00327 * 179.97438 * 14 13 12 33 33 H 1.07998 * 120.19317 * 359.96538 * 21 20 19 34 34 H 1.08003 * 119.84156 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.48381 * 180.02562 * 23 22 21 36 36 H 1.07999 * 120.01689 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2634 -5.4434 0.5311 13 6 3.8674 -4.9128 -0.6203 14 7 4.9599 -5.4619 -1.3037 15 6 5.5263 -6.6027 -0.8630 16 8 5.0884 -7.1558 0.1279 17 6 6.6760 -7.1800 -1.5816 18 7 7.1716 -6.6199 -2.6411 19 16 8.3798 -7.4266 -3.2097 20 6 8.3797 -8.7195 -2.0119 21 6 9.1569 -9.8504 -1.8102 22 6 8.8885 -10.6757 -0.7526 23 6 7.8443 -10.3849 0.1161 24 6 7.0679 -9.2788 -0.0636 25 6 7.3224 -8.4101 -1.1371 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5907 -4.7506 1.7301 31 1 3.5591 -6.3454 1.0461 32 1 5.3089 -5.0210 -2.0941 33 1 9.9695 -10.0783 -2.4841 34 1 9.4912 -11.5575 -0.5924 35 1 7.6444 -11.0454 0.9469 36 1 6.2605 -9.0683 0.6221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126399208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:32 Heat of formation + Delta-G solvation = 86.402981 kcal Electronic energy + Delta-G solvation = -23469.349874 eV Core-core repulsion = 19853.215728 eV Total energy + Delta-G solvation = -3616.134146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47223 -41.58600 -40.13298 -38.03172 -36.53682 -35.59292 -32.79962 -32.10825 -31.66134 -31.08849 -28.68150 -27.29927 -25.13163 -24.16755 -23.73769 -22.67731 -21.85508 -21.17404 -19.71192 -19.27850 -18.74087 -18.24414 -17.33998 -17.04117 -16.79891 -16.29572 -16.13680 -15.96424 -15.66575 -15.36241 -15.34447 -14.99053 -14.74364 -14.20363 -13.97993 -13.77644 -13.39621 -13.27336 -13.13104 -12.70115 -12.63976 -12.43755 -12.13719 -11.97216 -11.75756 -11.71782 -11.13009 -11.04541 -10.90717 -10.71760 -10.12473 -9.92517 -9.32940 -8.95877 -8.80137 -6.58243 -0.89146 -0.00152 0.21495 0.44176 0.52845 0.98238 1.15636 1.48895 1.55169 1.55814 1.77208 2.14093 2.15982 2.46511 2.64403 2.98731 3.11287 3.36046 3.73676 3.85551 4.06186 4.08717 4.31588 4.38924 4.50649 4.51145 4.60092 4.67938 4.76080 4.76717 4.96749 5.02645 5.13497 5.35256 5.47541 5.51962 5.70569 5.83545 5.87771 6.02420 6.23306 6.38740 6.70697 6.87260 7.16912 8.56147 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023754 B = 0.002436 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.448665 B =11493.634108 C =12306.771305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.018 4.018 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.623 4.623 8 H 0.043 0.957 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.060 3.940 12 C -0.286 4.286 13 C 0.264 3.736 14 N -0.612 5.612 15 C 0.598 3.402 16 O -0.517 6.517 17 C 0.069 3.931 18 N -0.515 5.515 19 S 0.455 5.545 20 C -0.214 4.214 21 C -0.071 4.071 22 C -0.079 4.079 23 C -0.108 4.108 24 C -0.070 4.070 25 C -0.109 4.109 26 N -0.345 5.345 27 H 0.261 0.739 28 H 0.058 0.942 29 H 0.017 0.983 30 H 0.208 0.792 31 H 0.176 0.824 32 H 0.423 0.577 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.131 -24.818 -2.717 32.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.661 4.661 8 H 0.062 0.938 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.088 4.088 12 C -0.317 4.317 13 C 0.009 3.991 14 N -0.261 5.261 15 C 0.381 3.619 16 O -0.391 6.391 17 C -0.117 4.117 18 N -0.344 5.344 19 S 0.616 5.384 20 C -0.335 4.335 21 C -0.092 4.092 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.119 4.119 26 N -0.176 5.176 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.225 0.775 31 H 0.193 0.807 32 H 0.261 0.739 33 H 0.186 0.814 34 H 0.193 0.807 35 H 0.178 0.822 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.009 -21.208 -4.667 30.215 hybrid contribution -0.902 -2.412 1.479 2.970 sum 20.107 -23.621 -3.188 31.183 Atomic orbital electron populations 1.70946 1.07370 1.30204 1.47222 1.27262 0.96465 1.06013 0.92057 0.82891 0.74166 0.71212 0.77756 1.19771 1.19592 1.20291 1.22280 0.94617 0.92204 1.56997 0.93845 1.19461 0.86350 0.82657 0.97565 1.48629 1.23810 1.20251 1.19561 1.23247 1.00479 0.88492 0.96620 1.21765 1.02052 1.06711 1.01192 1.19382 0.91413 0.93479 0.94776 1.42316 1.28772 1.24662 1.30319 1.17423 0.81688 0.79285 0.83541 1.90678 1.62414 1.60538 1.25450 1.21384 0.99390 0.96067 0.94881 1.71138 1.15344 1.33058 1.14857 1.81089 1.23323 1.07758 1.26267 1.24552 1.01845 1.04583 1.02524 1.20466 0.98756 0.90761 0.99259 1.21600 0.96347 0.99699 0.92519 1.21329 0.94640 0.96144 1.00551 1.20910 0.99968 0.93303 0.95069 1.19617 0.97266 0.95086 0.99903 1.77304 1.04774 1.18034 1.17442 0.92914 0.92398 0.96489 0.77531 0.80673 0.73891 0.81369 0.80703 0.82160 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.42 13.65 21.45 0.29 -54.13 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 3 Si 1.12 50.67 29.90 68.60 2.05 52.73 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.62 -36.18 9.24 25.60 0.24 -35.94 16 8 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.55 5.57 85.64 0.48 14.02 16 10 N -0.34 -16.45 3.67 -351.84 -1.29 -17.74 16 11 C 0.06 2.38 11.43 83.52 0.95 3.33 16 12 C -0.29 -11.39 9.60 22.11 0.21 -11.17 16 13 C 0.26 11.28 8.11 133.35 1.08 12.36 16 14 N -0.61 -22.06 5.44 -310.52 -1.69 -23.75 16 15 C 0.60 19.76 7.77 86.64 0.67 20.43 16 16 O -0.52 -18.13 12.14 -4.15 -0.05 -18.18 16 17 C 0.07 1.91 6.82 43.85 0.30 2.21 16 18 N -0.51 -12.97 10.49 -64.57 -0.68 -13.65 16 19 S 0.45 7.72 23.36 -56.49 -1.32 6.40 16 20 C -0.21 -3.63 6.73 22.97 0.15 -3.48 16 21 C -0.07 -0.69 10.03 22.05 0.22 -0.47 16 22 C -0.08 -0.60 10.00 22.09 0.22 -0.38 16 23 C -0.11 -1.26 9.93 21.98 0.22 -1.04 16 24 C -0.07 -1.39 9.57 22.36 0.21 -1.18 16 25 C -0.11 -2.50 6.10 -20.17 -0.12 -2.62 16 26 N -0.34 -17.00 12.42 -54.48 -0.68 -17.67 16 27 H 0.26 15.23 7.22 -92.71 -0.67 14.56 16 28 H 0.06 2.87 7.94 -2.39 -0.02 2.85 16 29 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 30 H 0.21 6.30 8.06 -2.91 -0.02 6.27 16 31 H 0.18 6.47 5.91 -2.91 -0.02 6.45 16 32 H 0.42 14.17 8.26 -92.71 -0.77 13.41 16 33 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 34 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 35 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 36 H 0.13 2.98 6.64 -2.91 -0.02 2.96 16 Total: -1.00 -74.99 332.77 2.44 -72.55 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.49 Total: 17.94 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.30 Total: -4.50 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -4.04 Total: -126.94 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.73 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -1.32 Total: 6.40 kcal Total: -74.99 2.44 -72.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126399208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.956 kcal (2) G-P(sol) polarization free energy of solvation -74.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds