Wall clock time and date at job start Tue Mar 31 2020 14:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 N 1.46901 * 109.47123 * 180.89120 * 3 2 1 5 5 C 1.46897 * 111.00003 * 61.29008 * 4 3 2 6 6 C 1.50708 * 109.46970 * 66.04261 * 5 4 3 7 7 H 1.07996 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00014 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99602 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00039 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46900 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46982 * 119.99675 * 10 8 6 13 13 H 1.48493 * 109.46787 * 240.00188 * 10 8 6 14 14 C 1.46898 * 111.00113 * 297.33731 * 4 3 2 15 15 C 1.50706 * 109.46982 * 288.59157 * 14 4 3 16 16 N 1.31978 * 120.04487 * 95.51828 * 15 14 4 17 17 C 1.32296 * 120.07208 * 179.97438 * 16 15 14 18 18 Br 1.89102 * 119.91577 * 179.97438 * 17 16 15 19 19 C 1.38319 * 120.16292 * 0.03118 * 17 16 15 20 20 N 1.32204 * 120.09242 * 359.96361 * 19 17 16 21 21 C 1.32679 * 119.92345 * 359.74666 * 20 19 17 22 22 N 1.39060 * 120.08559 * 180.27250 * 21 20 19 23 23 H 1.09005 * 109.47379 * 300.00017 * 1 2 3 24 24 H 1.09004 * 109.47615 * 59.99755 * 1 2 3 25 25 H 1.09009 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47461 * 240.00074 * 2 1 3 27 27 H 1.09004 * 109.46976 * 119.99842 * 2 1 3 28 28 H 1.09001 * 109.46611 * 60.89519 * 3 2 1 29 29 H 1.08994 * 109.47041 * 300.89344 * 3 2 1 30 30 H 1.08995 * 109.47391 * 186.04087 * 5 4 3 31 31 H 1.09001 * 109.47413 * 306.05086 * 5 4 3 32 32 H 0.97001 * 119.99193 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46995 * 48.58900 * 14 4 3 34 34 H 1.08995 * 109.47143 * 168.59449 * 14 4 3 35 35 H 1.08006 * 119.95617 * 179.97438 * 19 17 16 36 36 H 0.97000 * 119.99930 * 180.26771 * 22 21 20 37 37 H 0.97002 * 119.99262 * 0.25529 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4426 -0.0215 5 6 4.0175 0.7901 -1.2353 6 6 3.6411 1.6106 -2.4421 7 1 3.0805 2.5255 -2.3196 8 6 4.0134 1.1938 -3.7026 9 7 4.6966 0.0799 -3.8517 10 14 3.5475 2.2112 -5.1983 11 1 2.7864 3.4101 -4.7639 12 1 4.7791 2.6383 -5.9096 13 1 2.7071 1.3944 -6.1102 14 6 4.0530 0.8065 1.1856 15 6 3.8275 1.7068 2.3729 16 7 2.7741 1.5275 3.1475 17 6 2.5758 2.3172 4.1903 18 35 1.0646 2.0567 5.2967 19 6 3.4706 3.3335 4.4725 20 7 4.5281 3.5188 3.7010 21 6 4.7334 2.7253 2.6576 22 7 5.8476 2.9137 1.8472 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6897 1.9516 0.8979 29 1 1.6636 1.9609 -0.8818 30 1 5.1027 0.7078 -1.1761 31 1 3.5818 -0.2053 -1.3226 32 1 4.9588 -0.2130 -4.7385 33 1 3.5511 -0.1467 1.3518 34 1 5.1219 0.6366 1.0563 35 1 3.3053 3.9765 5.3244 36 1 5.9945 2.3353 1.0825 37 1 6.4778 3.6237 2.0466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140260632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:29 Heat of formation + Delta-G solvation = 51.574742 kcal Electronic energy + Delta-G solvation = -20461.307037 eV Core-core repulsion = 17319.882314 eV Total energy + Delta-G solvation = -3141.424723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08919 -37.55209 -35.49124 -33.98200 -32.82955 -31.93088 -31.53679 -29.07839 -27.50103 -26.49203 -24.52896 -23.47084 -22.29553 -22.09979 -19.34172 -18.48987 -17.51950 -16.35196 -15.62287 -15.47208 -15.36205 -14.94549 -14.59517 -14.30025 -14.12609 -13.47943 -13.30585 -12.60370 -12.22392 -12.16598 -11.72582 -11.49147 -11.35012 -11.14895 -11.01358 -10.87498 -10.73378 -10.59989 -10.48173 -10.43726 -10.31120 -9.96800 -9.73292 -9.32080 -9.05285 -8.49398 -7.87708 -7.28614 -6.09021 -4.09715 0.87791 1.22963 1.41416 3.26966 3.35235 3.37797 3.39943 3.69601 4.27799 4.38160 4.41055 4.64715 5.00696 5.09178 5.27664 5.37047 5.58941 5.61945 5.71680 5.92043 5.97549 6.13849 6.17876 6.42791 6.48204 6.57554 6.73727 6.93605 6.98096 7.18289 7.25320 7.35488 7.56961 7.72230 7.94936 8.01300 8.10283 8.44302 8.97914 9.54800 11.01582 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.003776 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.875867 B = 7412.568211 C = 8340.393083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.159 4.159 3 C 0.070 3.930 4 N -0.529 5.529 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.099 3.901 15 C 0.062 3.938 16 N -0.375 5.375 17 C -0.007 4.007 18 Br -0.014 7.014 19 C 0.135 3.865 20 N -0.505 5.505 21 C 0.392 3.608 22 N -0.820 5.820 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.003 0.997 32 H 0.261 0.739 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.422 0.578 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 3.509 17.926 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.198 4.198 3 C -0.058 4.058 4 N -0.253 5.253 5 C 0.064 3.936 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.030 4.030 15 C -0.093 4.093 16 N -0.090 5.090 17 C -0.226 4.226 18 Br 0.068 6.932 19 C -0.028 4.028 20 N -0.228 5.228 21 C 0.148 3.852 22 N -0.363 5.363 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.188 0.812 36 H 0.256 0.744 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.419 3.799 18.183 18.888 hybrid contribution 0.107 -0.234 -1.345 1.369 sum -3.312 3.564 16.838 17.527 Atomic orbital electron populations 1.21617 0.96458 1.00625 1.01142 1.22097 0.95727 0.99973 1.01996 1.21993 0.87682 0.94932 1.01202 1.62421 1.07334 1.54224 1.01345 1.19833 0.95188 0.93417 0.85122 1.21134 1.34832 1.08145 0.90104 0.91920 1.24946 0.95300 0.95169 0.98998 1.69957 1.38731 1.22052 1.22994 0.86487 0.78201 0.80289 0.82741 1.19713 1.21068 1.21116 1.20867 1.00319 0.94225 0.87614 1.21763 0.91350 0.97911 0.98284 1.67846 1.16996 1.23160 1.01023 1.23277 0.98742 1.00671 0.99860 1.96697 1.37133 1.97434 1.61922 1.23227 0.88126 0.94187 0.97262 1.68105 1.21388 1.27359 1.05986 1.19177 0.88200 0.89511 0.88342 1.42391 1.23834 1.38963 1.31081 0.93365 0.92987 0.93659 0.90826 0.92621 0.92950 0.90285 0.95445 0.97901 0.92978 0.92341 0.90062 0.81160 0.74387 0.76573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 37.15 0.37 -1.84 16 2 C -0.16 -2.88 5.30 -26.73 -0.14 -3.03 16 3 C 0.07 1.36 5.02 -3.82 -0.02 1.34 16 4 N -0.53 -10.44 4.65 -237.51 -1.10 -11.54 16 5 C 0.19 4.46 4.50 -4.97 -0.02 4.44 16 6 C -0.50 -13.26 8.50 -34.44 -0.29 -13.56 16 7 H 0.06 1.68 7.11 -52.49 -0.37 1.30 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 10 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.10 1.67 4.55 -4.97 -0.02 1.65 16 15 C 0.06 0.98 5.61 -82.15 -0.46 0.52 16 16 N -0.38 -6.02 9.75 -7.54 -0.07 -6.09 16 17 C -0.01 -0.10 7.17 -17.32 -0.12 -0.22 16 18 Br -0.01 -0.17 33.89 -68.01 -2.30 -2.47 16 19 C 0.13 1.73 10.95 -17.36 -0.19 1.54 16 20 N -0.50 -7.16 10.53 -12.21 -0.13 -7.29 16 21 C 0.39 5.78 7.75 -154.68 -1.20 4.58 16 22 N -0.82 -10.17 8.99 31.21 0.28 -9.89 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.07 1.52 6.26 -51.93 -0.32 1.19 16 27 H 0.06 0.99 6.28 -51.93 -0.33 0.66 16 28 H 0.05 1.00 6.90 -51.93 -0.36 0.64 16 29 H 0.08 1.68 6.82 -51.93 -0.35 1.32 16 30 H 0.03 0.68 7.87 -51.93 -0.41 0.27 16 31 H 0.00 0.08 6.02 -51.93 -0.31 -0.23 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 1.01 5.90 -51.93 -0.31 0.71 16 34 H 0.08 1.25 6.51 -51.93 -0.34 0.91 16 35 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.42 5.35 6.94 -40.82 -0.28 5.07 16 37 H 0.40 4.14 8.96 -40.82 -0.37 3.77 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -28.76 323.02 -9.53 -38.29 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.58 Total: 5.92 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.20 Total: -3.15 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.29 Total: -59.45 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.30 Total: -2.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.76 -9.53 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140260632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.864 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds