Wall clock time and date at job start Tue Mar 31 2020 14:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 N 1.46901 * 109.47123 * 180.89120 * 3 2 1 5 5 C 1.46897 * 111.00003 * 61.29008 * 4 3 2 6 6 C 1.50708 * 109.46970 * 66.04261 * 5 4 3 7 7 H 1.07996 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00014 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99602 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00039 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46900 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46982 * 119.99675 * 10 8 6 13 13 H 1.48493 * 109.46787 * 240.00188 * 10 8 6 14 14 C 1.46898 * 111.00113 * 297.33731 * 4 3 2 15 15 C 1.50706 * 109.46982 * 288.59157 * 14 4 3 16 16 N 1.31978 * 120.04487 * 95.51828 * 15 14 4 17 17 C 1.32296 * 120.07208 * 179.97438 * 16 15 14 18 18 Br 1.89102 * 119.91577 * 179.97438 * 17 16 15 19 19 C 1.38319 * 120.16292 * 0.03118 * 17 16 15 20 20 N 1.32204 * 120.09242 * 359.96361 * 19 17 16 21 21 C 1.32679 * 119.92345 * 359.74666 * 20 19 17 22 22 N 1.39060 * 120.08559 * 180.27250 * 21 20 19 23 23 H 1.09005 * 109.47379 * 300.00017 * 1 2 3 24 24 H 1.09004 * 109.47615 * 59.99755 * 1 2 3 25 25 H 1.09009 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47461 * 240.00074 * 2 1 3 27 27 H 1.09004 * 109.46976 * 119.99842 * 2 1 3 28 28 H 1.09001 * 109.46611 * 60.89519 * 3 2 1 29 29 H 1.08994 * 109.47041 * 300.89344 * 3 2 1 30 30 H 1.08995 * 109.47391 * 186.04087 * 5 4 3 31 31 H 1.09001 * 109.47413 * 306.05086 * 5 4 3 32 32 H 0.97001 * 119.99193 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46995 * 48.58900 * 14 4 3 34 34 H 1.08995 * 109.47143 * 168.59449 * 14 4 3 35 35 H 1.08006 * 119.95617 * 179.97438 * 19 17 16 36 36 H 0.97000 * 119.99930 * 180.26771 * 22 21 20 37 37 H 0.97002 * 119.99262 * 0.25529 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4426 -0.0215 5 6 4.0175 0.7901 -1.2353 6 6 3.6411 1.6106 -2.4421 7 1 3.0805 2.5255 -2.3196 8 6 4.0134 1.1938 -3.7026 9 7 4.6966 0.0799 -3.8517 10 14 3.5475 2.2112 -5.1983 11 1 2.7864 3.4101 -4.7639 12 1 4.7791 2.6383 -5.9096 13 1 2.7071 1.3944 -6.1102 14 6 4.0530 0.8065 1.1856 15 6 3.8275 1.7068 2.3729 16 7 2.7741 1.5275 3.1475 17 6 2.5758 2.3172 4.1903 18 35 1.0646 2.0567 5.2967 19 6 3.4706 3.3335 4.4725 20 7 4.5281 3.5188 3.7010 21 6 4.7334 2.7253 2.6576 22 7 5.8476 2.9137 1.8472 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6897 1.9516 0.8979 29 1 1.6636 1.9609 -0.8818 30 1 5.1027 0.7078 -1.1761 31 1 3.5818 -0.2053 -1.3226 32 1 4.9588 -0.2130 -4.7385 33 1 3.5511 -0.1467 1.3518 34 1 5.1219 0.6366 1.0563 35 1 3.3053 3.9765 5.3244 36 1 5.9945 2.3353 1.0825 37 1 6.4778 3.6237 2.0466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140260632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:28 Heat of formation + Delta-G solvation = 31.813530 kcal Electronic energy + Delta-G solvation = -20462.163948 eV Core-core repulsion = 17319.882314 eV Total energy + Delta-G solvation = -3142.281634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.20903 -39.10454 -36.57474 -35.24139 -34.71852 -33.34176 -32.67416 -30.40029 -28.99416 -27.97171 -26.12479 -24.64874 -23.85793 -23.49480 -20.93128 -19.60032 -18.57140 -18.34532 -17.08369 -16.73387 -16.52405 -16.41908 -16.04774 -15.86949 -15.29663 -15.05709 -14.70892 -14.19393 -13.70528 -13.32081 -13.28672 -13.00041 -12.73574 -12.66156 -12.60581 -12.53705 -12.32236 -12.26258 -11.83046 -11.67637 -11.46574 -11.31669 -11.30377 -11.23246 -10.56168 -10.20929 -9.01389 -8.86551 -8.16227 -6.23315 -0.20850 0.10287 0.38550 1.40741 1.43361 1.54606 2.32387 2.41808 2.57483 3.09464 3.17676 3.34075 3.53951 3.60684 3.91401 4.14332 4.17522 4.23010 4.47618 4.51830 4.58932 4.72721 4.91577 5.01727 5.07087 5.14141 5.18552 5.34499 5.44173 5.52124 5.70360 5.85098 6.08245 6.25399 6.31077 6.48280 6.60603 6.91654 6.95617 7.45291 8.94050 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.003776 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.875867 B = 7412.568211 C = 8340.393083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.150 4.150 3 C 0.078 3.922 4 N -0.529 5.529 5 C 0.205 3.795 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.956 3.044 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.283 1.283 14 C 0.106 3.894 15 C 0.039 3.961 16 N -0.390 5.390 17 C -0.021 4.021 18 Br 0.007 6.993 19 C 0.147 3.853 20 N -0.510 5.510 21 C 0.387 3.613 22 N -0.810 5.810 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.015 0.985 31 H -0.020 1.020 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.207 0.793 36 H 0.421 0.579 37 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 4.654 19.095 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.189 4.189 3 C -0.050 4.050 4 N -0.253 5.253 5 C 0.080 3.920 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.570 5.570 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.209 1.209 14 C -0.023 4.023 15 C -0.115 4.115 16 N -0.106 5.106 17 C -0.240 4.240 18 Br 0.089 6.911 19 C -0.017 4.017 20 N -0.234 5.234 21 C 0.143 3.857 22 N -0.354 5.354 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.033 0.967 31 H -0.002 1.002 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.223 0.777 36 H 0.254 0.746 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.975 4.956 19.349 20.366 hybrid contribution 0.254 -0.567 -1.561 1.680 sum -3.721 4.389 17.788 18.696 Atomic orbital electron populations 1.21573 0.94351 1.01778 1.01561 1.21968 0.97554 0.98721 1.00633 1.21875 0.87421 0.95460 1.00286 1.62289 1.07685 1.54096 1.01212 1.19477 0.94156 0.92124 0.86285 1.21386 1.34359 1.07987 0.91339 0.92658 1.25687 0.95305 0.96147 1.01710 1.70058 1.39839 1.23469 1.23660 0.85526 0.77989 0.78862 0.79394 1.19311 1.20490 1.20868 1.20785 1.00654 0.94062 0.86804 1.21460 0.92568 0.98916 0.98564 1.67765 1.17168 1.23926 1.01717 1.23634 0.99848 1.00822 0.99735 1.96710 1.36019 1.97430 1.60947 1.23824 0.86873 0.93654 0.97330 1.68216 1.21987 1.27217 1.05956 1.19240 0.88416 0.89308 0.88747 1.42376 1.23436 1.39022 1.30517 0.92199 0.93246 0.92180 0.93807 0.92216 0.92240 0.92537 0.96693 1.00187 0.92865 0.93037 0.89053 0.77663 0.74588 0.75289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.91 71.98 0.71 -3.40 16 2 C -0.15 -5.48 5.30 30.59 0.16 -5.32 16 3 C 0.08 3.04 5.02 86.30 0.43 3.47 16 4 N -0.53 -21.18 4.65 -905.36 -4.21 -25.39 16 5 C 0.21 9.97 4.50 85.56 0.38 10.35 16 6 C -0.51 -27.43 8.50 25.60 0.22 -27.22 16 7 H 0.06 2.99 7.11 -2.91 -0.02 2.97 16 8 C 0.01 0.53 5.46 84.66 0.46 1.00 16 9 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 10 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.11 3.58 4.55 85.56 0.39 3.97 16 15 C 0.04 1.21 5.61 42.78 0.24 1.45 16 16 N -0.39 -12.08 9.75 -177.77 -1.73 -13.81 16 17 C -0.02 -0.55 7.17 84.64 0.61 0.05 16 18 Br 0.01 0.14 33.89 -20.37 -0.69 -0.55 16 19 C 0.15 3.38 10.95 84.66 0.93 4.31 16 20 N -0.51 -13.41 10.53 -192.54 -2.03 -15.44 16 21 C 0.39 10.94 7.75 132.99 1.03 11.97 16 22 N -0.81 -19.35 8.99 -55.17 -0.50 -19.85 16 23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.04 1.86 6.26 -2.39 -0.01 1.85 16 27 H 0.06 2.12 6.28 -2.39 -0.01 2.11 16 28 H 0.06 2.24 6.90 -2.39 -0.02 2.23 16 29 H 0.06 2.44 6.82 -2.39 -0.02 2.42 16 30 H 0.02 0.76 7.87 -2.39 -0.02 0.74 16 31 H -0.02 -1.03 6.02 -2.39 -0.01 -1.05 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.05 1.81 5.90 -2.39 -0.01 1.79 16 34 H 0.09 2.83 6.51 -2.39 -0.02 2.82 16 35 H 0.21 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.42 10.48 6.94 -92.71 -0.64 9.84 16 37 H 0.42 7.96 8.96 -92.71 -0.83 7.13 16 Total: -1.00 -60.96 323.02 -1.63 -62.59 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.35 Total: 19.56 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.57 Total: 0.63 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -8.18 Total: -127.49 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.69 Total: -0.55 kcal Total: -60.96 -1.63 -62.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140260632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.401 kcal (2) G-P(sol) polarization free energy of solvation -60.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds