Wall clock time and date at job start Tue Mar 31 2020 14:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99762 * 269.99560 * 5 4 3 7 7 H 1.07997 * 120.00488 * 324.55054 * 6 5 4 8 8 C 1.38817 * 119.99951 * 144.55459 * 6 5 4 9 9 N 1.31618 * 119.99887 * 337.68665 * 8 6 5 10 10 Si 1.86800 * 120.00188 * 157.69049 * 8 6 5 11 11 H 1.48507 * 109.46882 * 89.99851 * 10 8 6 12 12 H 1.48499 * 109.46928 * 209.99882 * 10 8 6 13 13 H 1.48500 * 109.46976 * 330.00056 * 10 8 6 14 14 C 1.46500 * 120.00441 * 90.00153 * 5 4 3 15 15 C 1.50695 * 109.47297 * 87.29567 * 14 5 4 16 16 N 1.31977 * 120.04404 * 90.00419 * 15 14 5 17 17 C 1.32296 * 120.07903 * 179.97438 * 16 15 14 18 18 Br 1.89097 * 119.92130 * 180.02562 * 17 16 15 19 19 C 1.38330 * 120.16031 * 0.02562 * 17 16 15 20 20 N 1.32195 * 120.09030 * 359.97438 * 19 17 16 21 21 C 1.32695 * 119.92170 * 359.73479 * 20 19 17 22 22 N 1.39058 * 120.07875 * 180.27433 * 21 20 19 23 23 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47392 * 300.00369 * 1 2 3 25 25 H 1.08995 * 109.47406 * 60.00262 * 1 2 3 26 26 H 1.08998 * 109.47014 * 239.99924 * 2 1 3 27 27 H 1.09002 * 109.46849 * 120.00064 * 2 1 3 28 28 H 1.09002 * 109.47302 * 59.99576 * 3 2 1 29 29 H 1.09002 * 109.47324 * 299.99773 * 3 2 1 30 30 H 1.08998 * 109.47014 * 59.99924 * 4 3 2 31 31 H 1.09002 * 109.47115 * 299.99583 * 4 3 2 32 32 H 0.96991 * 120.00405 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47639 * 207.30061 * 14 5 4 34 34 H 1.09005 * 109.46716 * 327.30364 * 14 5 4 35 35 H 1.08000 * 119.95365 * 180.02562 * 19 17 16 36 36 H 0.96998 * 119.99953 * 180.26379 * 22 21 20 37 37 H 0.96998 * 120.00328 * 0.26623 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2870 3.4695 -1.1844 7 1 4.6689 2.9215 -2.0330 8 6 4.0281 4.8288 -1.2956 9 7 3.1836 5.4076 -0.4685 10 14 4.8781 5.8363 -2.6191 11 1 4.0516 5.8307 -3.8529 12 1 5.0495 7.2329 -2.1444 13 1 6.2090 5.2462 -2.9122 14 6 4.3019 3.5140 1.2702 15 6 5.7041 3.2230 1.7393 16 7 6.6994 4.0094 1.3748 17 6 7.9306 3.7548 1.7865 18 35 9.3531 4.8849 1.2621 19 6 8.1798 2.6640 2.5998 20 7 7.1878 1.8720 2.9688 21 6 5.9507 2.1274 2.5625 22 7 4.9039 1.2997 2.9534 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9336 0.9285 -0.8891 31 1 3.9329 0.9288 0.8909 32 1 3.0024 6.3573 -0.5463 33 1 4.1817 4.5880 1.1286 34 1 3.5891 3.1640 2.0169 35 1 9.1862 2.4595 2.9343 36 1 4.0006 1.4853 2.6527 37 1 5.0769 0.5368 3.5269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140263761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:11 Heat of formation + Delta-G solvation = 62.608649 kcal Electronic energy + Delta-G solvation = -20614.361257 eV Core-core repulsion = 17473.415000 eV Total energy + Delta-G solvation = -3140.946257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62267 -36.64286 -35.09368 -34.32413 -33.15151 -31.36204 -31.21273 -28.97509 -27.72870 -26.48217 -24.06096 -23.20570 -22.41567 -20.92061 -20.04872 -18.07909 -17.26225 -16.89155 -15.30669 -15.19720 -14.90690 -14.82235 -14.59449 -13.98724 -13.71132 -13.51664 -13.28730 -12.37944 -12.20852 -11.96335 -11.85347 -11.30097 -11.09535 -11.03782 -10.80084 -10.68130 -10.56070 -10.46490 -10.27297 -10.11391 -10.08772 -10.03258 -9.86655 -9.72242 -8.64270 -8.53422 -7.54511 -6.73584 -5.87930 -3.38989 1.26054 1.67144 1.78708 3.39465 3.48473 3.54680 3.62487 4.11004 4.49964 4.74867 4.86280 5.05140 5.23632 5.35295 5.37145 5.49113 5.57528 5.64959 5.91658 5.93389 6.12974 6.20850 6.26809 6.35575 6.38850 6.47866 6.56426 6.64274 6.94934 7.16556 7.23937 7.44997 7.49284 7.77625 8.00622 8.33709 8.45613 9.06332 9.71598 10.23713 11.14737 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.005361 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.835733 B = 5221.805201 C = 7061.304675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.135 4.135 4 C 0.141 3.859 5 N -0.567 5.567 6 C -0.258 4.258 7 H 0.060 0.940 8 C 0.026 3.974 9 N -0.880 5.880 10 Si 0.896 3.104 11 H -0.288 1.288 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.190 3.810 15 C 0.056 3.944 16 N -0.366 5.366 17 C 0.005 3.995 18 Br -0.025 7.025 19 C 0.109 3.891 20 N -0.506 5.506 21 C 0.364 3.636 22 N -0.836 5.836 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.257 0.743 33 H 0.122 0.878 34 H 0.042 0.958 35 H 0.165 0.835 36 H 0.414 0.586 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 -6.507 7.197 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.174 4.174 4 C 0.015 3.985 5 N -0.286 5.286 6 C -0.387 4.387 7 H 0.077 0.923 8 C -0.176 4.176 9 N -0.521 5.521 10 Si 0.725 3.275 11 H -0.215 1.215 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.062 3.938 15 C -0.100 4.100 16 N -0.081 5.081 17 C -0.213 4.213 18 Br 0.058 6.942 19 C -0.053 4.053 20 N -0.230 5.230 21 C 0.120 3.880 22 N -0.384 5.384 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.139 0.861 34 H 0.060 0.940 35 H 0.182 0.818 36 H 0.249 0.751 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.624 -5.874 6.968 10.710 hybrid contribution -0.020 0.074 -0.491 0.497 sum 5.604 -5.801 6.477 10.344 Atomic orbital electron populations 1.21758 0.96667 1.00472 1.01768 1.21532 0.95216 0.98484 1.00907 1.22174 0.98668 0.94075 1.02529 1.21121 0.91759 0.86996 0.98665 1.43745 1.72884 1.10252 1.01711 1.18928 1.37744 0.91994 0.90077 0.92254 1.25012 0.96268 0.98426 0.97863 1.69927 1.31776 1.11178 1.39247 0.86415 0.80148 0.79832 0.81113 1.21508 1.21229 1.20105 1.19894 0.83472 1.03899 0.86536 1.23671 1.00023 0.91405 0.94918 1.68050 0.97458 1.26846 1.15794 1.23386 0.94264 0.98598 1.05004 1.96636 1.39422 1.66209 1.91959 1.23028 0.98389 0.89740 0.94145 1.67955 0.98703 1.29997 1.26324 1.19382 0.87747 0.89925 0.90947 1.42423 1.07878 1.31277 1.56785 0.93695 0.93056 0.92857 0.92669 0.93023 0.92908 0.91449 0.93846 0.94548 0.93318 0.86113 0.94015 0.81779 0.75096 0.77115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.13 -2.34 5.54 -26.73 -0.15 -2.48 16 4 C 0.14 2.67 5.61 -4.04 -0.02 2.65 16 5 N -0.57 -12.99 2.42 -174.61 -0.42 -13.41 16 6 C -0.26 -6.78 9.47 -15.06 -0.14 -6.93 16 7 H 0.06 1.60 7.92 -52.49 -0.42 1.19 16 8 C 0.03 0.69 4.93 -17.43 -0.09 0.60 16 9 N -0.88 -24.13 11.41 55.49 0.63 -23.49 16 10 Si 0.90 21.95 29.61 -169.99 -5.03 16.92 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.19 4.17 5.19 -5.20 -0.03 4.14 16 15 C 0.06 1.16 6.39 -82.16 -0.53 0.63 16 16 N -0.37 -8.02 10.39 -7.55 -0.08 -8.10 16 17 C 0.01 0.10 7.17 -17.32 -0.12 -0.02 16 18 Br -0.02 -0.40 33.89 -68.01 -2.30 -2.70 16 19 C 0.11 1.78 10.95 -17.36 -0.19 1.59 16 20 N -0.51 -8.68 10.53 -12.21 -0.13 -8.81 16 21 C 0.36 6.41 7.75 -154.67 -1.20 5.22 16 22 N -0.84 -11.45 8.01 31.21 0.25 -11.20 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 31 H 0.04 0.60 5.42 -51.93 -0.28 0.32 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.12 3.12 5.42 -51.93 -0.28 2.83 16 34 H 0.04 0.81 6.49 -51.93 -0.34 0.47 16 35 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.41 5.53 5.29 -40.82 -0.22 5.31 16 37 H 0.40 4.44 8.95 -40.82 -0.37 4.07 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -28.88 327.34 -9.24 -38.12 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.83 Total: 5.67 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.26 Total: 2.06 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.25 Total: -65.01 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.30 Total: -2.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.88 -9.24 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140263761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.730 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds