Wall clock time and date at job start Tue Mar 31 2020 14:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99762 * 269.99560 * 5 4 3 7 7 H 1.07997 * 120.00488 * 324.55054 * 6 5 4 8 8 C 1.38817 * 119.99951 * 144.55459 * 6 5 4 9 9 N 1.31618 * 119.99887 * 337.68665 * 8 6 5 10 10 Si 1.86800 * 120.00188 * 157.69049 * 8 6 5 11 11 H 1.48507 * 109.46882 * 89.99851 * 10 8 6 12 12 H 1.48499 * 109.46928 * 209.99882 * 10 8 6 13 13 H 1.48500 * 109.46976 * 330.00056 * 10 8 6 14 14 C 1.46500 * 120.00441 * 90.00153 * 5 4 3 15 15 C 1.50695 * 109.47297 * 87.29567 * 14 5 4 16 16 N 1.31977 * 120.04404 * 90.00419 * 15 14 5 17 17 C 1.32296 * 120.07903 * 179.97438 * 16 15 14 18 18 Br 1.89097 * 119.92130 * 180.02562 * 17 16 15 19 19 C 1.38330 * 120.16031 * 0.02562 * 17 16 15 20 20 N 1.32195 * 120.09030 * 359.97438 * 19 17 16 21 21 C 1.32695 * 119.92170 * 359.73479 * 20 19 17 22 22 N 1.39058 * 120.07875 * 180.27433 * 21 20 19 23 23 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47392 * 300.00369 * 1 2 3 25 25 H 1.08995 * 109.47406 * 60.00262 * 1 2 3 26 26 H 1.08998 * 109.47014 * 239.99924 * 2 1 3 27 27 H 1.09002 * 109.46849 * 120.00064 * 2 1 3 28 28 H 1.09002 * 109.47302 * 59.99576 * 3 2 1 29 29 H 1.09002 * 109.47324 * 299.99773 * 3 2 1 30 30 H 1.08998 * 109.47014 * 59.99924 * 4 3 2 31 31 H 1.09002 * 109.47115 * 299.99583 * 4 3 2 32 32 H 0.96991 * 120.00405 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47639 * 207.30061 * 14 5 4 34 34 H 1.09005 * 109.46716 * 327.30364 * 14 5 4 35 35 H 1.08000 * 119.95365 * 180.02562 * 19 17 16 36 36 H 0.96998 * 119.99953 * 180.26379 * 22 21 20 37 37 H 0.96998 * 120.00328 * 0.26623 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2870 3.4695 -1.1844 7 1 4.6689 2.9215 -2.0330 8 6 4.0281 4.8288 -1.2956 9 7 3.1836 5.4076 -0.4685 10 14 4.8781 5.8363 -2.6191 11 1 4.0516 5.8307 -3.8529 12 1 5.0495 7.2329 -2.1444 13 1 6.2090 5.2462 -2.9122 14 6 4.3019 3.5140 1.2702 15 6 5.7041 3.2230 1.7393 16 7 6.6994 4.0094 1.3748 17 6 7.9306 3.7548 1.7865 18 35 9.3531 4.8849 1.2621 19 6 8.1798 2.6640 2.5998 20 7 7.1878 1.8720 2.9688 21 6 5.9507 2.1274 2.5625 22 7 4.9039 1.2997 2.9534 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9336 0.9285 -0.8891 31 1 3.9329 0.9288 0.8909 32 1 3.0024 6.3573 -0.5463 33 1 4.1817 4.5880 1.1286 34 1 3.5891 3.1640 2.0169 35 1 9.1862 2.4595 2.9343 36 1 4.0006 1.4853 2.6527 37 1 5.0769 0.5368 3.5269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140263761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:11 Heat of formation + Delta-G solvation = 44.838578 kcal Electronic energy + Delta-G solvation = -20615.131825 eV Core-core repulsion = 17473.415000 eV Total energy + Delta-G solvation = -3141.716825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.04261 -38.24469 -36.45387 -35.67970 -34.70072 -33.03454 -32.64916 -30.38393 -29.15619 -28.12593 -25.71985 -24.62909 -23.83825 -22.34205 -21.55275 -19.45967 -18.82496 -18.50157 -16.86353 -16.61430 -16.44515 -16.34606 -16.03089 -15.53291 -15.23371 -15.06720 -14.62642 -13.80563 -13.63403 -13.30930 -13.20741 -13.14415 -12.71647 -12.61328 -12.55216 -12.30369 -12.11487 -11.89655 -11.83878 -11.64250 -11.44459 -11.41058 -11.33692 -11.17130 -10.51634 -10.09571 -8.87662 -8.60373 -7.86753 -5.40245 -0.12466 0.23528 0.43715 1.40670 1.47225 1.54584 2.35647 2.49356 2.70191 3.24060 3.41055 3.51049 3.71238 3.75669 4.09298 4.20774 4.30805 4.46892 4.53913 4.57841 4.71648 4.86413 5.03916 5.09498 5.13225 5.15110 5.22847 5.43883 5.56647 5.61980 5.64817 5.78084 5.93588 6.27924 6.44092 6.70807 7.03511 7.14422 7.83410 8.30967 9.11375 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.005361 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.835733 B = 5221.805201 C = 7061.304675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.123 4.123 4 C 0.141 3.859 5 N -0.581 5.581 6 C -0.260 4.260 7 H 0.044 0.956 8 C -0.012 4.012 9 N -0.901 5.901 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.199 3.801 15 C 0.028 3.972 16 N -0.404 5.404 17 C -0.020 4.020 18 Br -0.008 7.008 19 C 0.130 3.870 20 N -0.505 5.505 21 C 0.371 3.629 22 N -0.815 5.815 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.252 0.748 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.205 0.795 36 H 0.418 0.582 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -8.639 8.686 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.015 3.985 5 N -0.300 5.300 6 C -0.390 4.390 7 H 0.062 0.938 8 C -0.211 4.211 9 N -0.544 5.544 10 Si 0.765 3.235 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.071 3.929 15 C -0.128 4.128 16 N -0.119 5.119 17 C -0.238 4.238 18 Br 0.074 6.926 19 C -0.032 4.032 20 N -0.228 5.228 21 C 0.127 3.873 22 N -0.363 5.363 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.221 0.779 36 H 0.253 0.747 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.280 -8.058 8.478 13.276 hybrid contribution -0.126 0.672 -0.861 1.099 sum 6.154 -7.387 7.617 12.266 Atomic orbital electron populations 1.21743 0.95604 1.01835 1.01360 1.21471 0.96121 0.95680 1.02126 1.21996 0.97415 0.96398 1.00454 1.21224 0.92695 0.85143 0.99391 1.43857 1.73825 1.11273 1.01070 1.18955 1.36772 0.92228 0.91048 0.93784 1.25417 0.97142 0.99203 0.99349 1.70012 1.33119 1.10777 1.40538 0.85784 0.79105 0.78567 0.80031 1.20889 1.21750 1.20889 1.19601 0.85211 1.01525 0.86582 1.23313 0.99060 0.93086 0.97292 1.67894 0.98990 1.28218 1.16838 1.23727 0.93773 1.00139 1.06191 1.96626 1.37900 1.66040 1.92009 1.23663 0.99794 0.87978 0.91741 1.68140 0.98458 1.29970 1.26281 1.19324 0.88757 0.89256 0.89955 1.42354 1.07121 1.30823 1.55965 0.91408 0.92773 0.94064 0.92572 0.90611 0.93276 0.95220 0.94969 0.91764 0.93905 0.90077 0.92029 0.77868 0.74718 0.75111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.12 -2.92 5.93 30.59 0.18 -2.74 16 3 C -0.12 -4.21 5.54 30.59 0.17 -4.04 16 4 C 0.14 5.24 5.61 86.38 0.48 5.73 16 5 N -0.58 -26.89 2.42 -706.35 -1.71 -28.60 16 6 C -0.26 -14.02 9.47 84.03 0.80 -13.23 16 7 H 0.04 2.47 7.92 -2.91 -0.02 2.44 16 8 C -0.01 -0.68 4.93 84.86 0.42 -0.26 16 9 N -0.90 -51.11 11.41 21.65 0.25 -50.87 16 10 Si 0.94 46.28 29.61 68.60 2.03 48.31 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 13 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 14 C 0.20 8.78 5.19 85.63 0.44 9.22 16 15 C 0.03 1.16 6.39 42.78 0.27 1.44 16 16 N -0.40 -17.64 10.39 -177.79 -1.85 -19.48 16 17 C -0.02 -0.73 7.17 84.64 0.61 -0.12 16 18 Br -0.01 -0.25 33.89 -20.37 -0.69 -0.94 16 19 C 0.13 3.91 10.95 84.66 0.93 4.84 16 20 N -0.50 -15.75 10.53 -192.54 -2.03 -17.78 16 21 C 0.37 12.27 7.75 132.98 1.03 13.30 16 22 N -0.81 -19.80 8.01 -55.16 -0.44 -20.24 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 1.26 8.04 -2.39 -0.02 1.24 16 31 H 0.06 2.00 5.42 -2.39 -0.01 1.98 16 32 H 0.25 14.00 8.31 -92.72 -0.77 13.23 16 33 H 0.08 4.32 5.42 -2.39 -0.01 4.31 16 34 H 0.06 2.36 6.49 -2.38 -0.02 2.35 16 35 H 0.20 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.42 9.92 5.29 -92.71 -0.49 9.43 16 37 H 0.42 7.62 8.95 -92.71 -0.83 6.79 16 Total: -1.00 -64.22 327.34 1.39 -62.82 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -0.21 Total: 15.31 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.05 Total: 11.47 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -5.78 Total: -136.98 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.94 kcal Total: -64.22 1.39 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140263761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.661 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds