Wall clock time and date at job start Tue Mar 31 2020 15:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47105 * 274.63549 * 3 2 1 5 5 H 1.48500 * 109.47272 * 34.63656 * 3 2 1 6 6 H 1.48506 * 109.47406 * 154.63546 * 3 2 1 7 7 C 1.39913 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99542 * 162.92574 * 7 2 1 9 9 C 1.41017 * 120.00130 * 342.93356 * 7 2 1 10 10 C 1.40753 * 120.29071 * 334.26709 * 9 7 2 11 11 C 1.36406 * 119.96110 * 179.97438 * 10 9 7 12 12 C 1.39054 * 120.58320 * 0.02562 * 11 10 9 13 13 Cl 1.73595 * 119.70522 * 179.97438 * 12 11 10 14 14 C 1.38321 * 120.59098 * 359.72209 * 12 11 10 15 15 C 1.38676 * 120.01260 * 0.55718 * 14 12 11 16 16 N 1.38746 * 120.28524 * 179.72035 * 15 14 12 17 17 C 1.46503 * 119.99658 * 359.45273 * 16 15 14 18 18 C 1.50701 * 109.46807 * 180.27677 * 17 16 15 19 19 N 1.29905 * 124.85927 * 89.99935 * 18 17 16 20 20 C 1.36058 * 108.80068 * 179.97438 * 19 18 17 21 21 C 1.39589 * 133.80391 * 180.02562 * 20 19 18 22 22 C 1.37685 * 119.72918 * 179.97438 * 21 20 19 23 23 C 1.38721 * 120.42239 * 359.97438 * 22 21 20 24 24 C 1.37907 * 120.47646 * 0.02562 * 23 22 21 25 25 C 1.38673 * 119.87489 * 359.97438 * 24 23 22 26 26 O 1.34238 * 124.85157 * 269.69081 * 18 17 16 27 27 H 0.96998 * 119.99576 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.01541 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.70616 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.99550 * 180.30534 * 14 12 11 31 31 H 0.96999 * 120.00328 * 179.72308 * 16 15 14 32 32 H 1.09002 * 109.47102 * 300.26846 * 17 16 15 33 33 H 1.08997 * 109.47197 * 60.27586 * 17 16 15 34 34 H 1.07999 * 120.13566 * 359.95676 * 21 20 19 35 35 H 1.08002 * 119.78634 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.76108 * 180.02562 * 23 22 21 37 37 H 1.07995 * 120.06692 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3925 2.1029 -1.3955 5 1 1.4929 2.6224 0.7958 6 1 3.5862 1.4138 0.5998 7 6 2.0085 -1.2117 0.0005 8 1 3.0528 -1.2324 -0.2741 9 6 1.3500 -2.4059 0.3595 10 6 0.2253 -2.3699 1.2050 11 6 -0.4069 -3.5291 1.5475 12 6 0.0498 -4.7521 1.0688 13 17 -0.7717 -6.2134 1.5197 14 6 1.1497 -4.8143 0.2323 15 6 1.8145 -3.6516 -0.1269 16 7 2.9219 -3.7080 -0.9610 17 6 3.4006 -5.0009 -1.4564 18 6 4.6102 -4.7876 -2.3296 19 7 5.8384 -4.7752 -1.9067 20 6 6.6646 -4.5579 -2.9656 21 6 8.0493 -4.4488 -3.1043 22 6 8.5952 -4.2210 -4.3477 23 6 7.7780 -4.1001 -5.4621 24 6 6.4084 -4.2057 -5.3400 25 6 5.8416 -4.4350 -4.0953 26 8 4.5729 -4.5889 -3.6567 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1374 -1.4250 1.5817 29 1 -1.2698 -3.4966 2.1962 30 1 1.4932 -5.7690 -0.1379 31 1 3.3815 -2.8917 -1.2129 32 1 3.6693 -5.6364 -0.6126 33 1 2.6134 -5.4815 -2.0372 34 1 8.6899 -4.5423 -2.2398 35 1 9.6664 -4.1359 -4.4559 36 1 8.2176 -3.9219 -6.4324 37 1 5.7785 -4.1109 -6.2121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161973716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:46 Heat of formation + Delta-G solvation = 54.791092 kcal Electronic energy + Delta-G solvation = -23775.838272 eV Core-core repulsion = 20123.996874 eV Total energy + Delta-G solvation = -3651.841397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.32620 -38.37960 -38.06608 -35.64908 -35.13074 -34.43616 -33.49748 -30.87255 -30.67665 -29.60187 -28.44748 -26.28670 -24.96425 -23.31015 -22.54128 -21.81054 -20.85363 -20.27091 -18.20609 -17.53932 -17.30629 -16.90185 -16.57816 -15.68019 -15.21990 -14.89138 -14.41853 -14.15895 -14.07128 -13.79267 -13.51366 -13.08448 -12.91528 -12.62413 -12.49133 -12.33718 -12.12212 -11.73008 -11.67512 -11.53048 -11.37959 -11.17879 -10.77710 -10.55023 -10.51541 -10.13587 -9.81136 -9.70950 -9.21281 -9.00092 -8.97942 -8.63430 -7.46661 -6.90754 -6.54938 -4.31375 0.48982 1.03657 2.23586 2.39384 2.59589 2.96284 3.03073 3.04486 3.10532 3.41364 3.46050 3.65209 3.86979 4.33980 4.39163 4.52618 4.63018 4.89334 4.94712 4.97632 5.19936 5.44217 5.50735 5.61692 5.70721 5.85742 6.04735 6.09425 6.11272 6.12906 6.34810 6.43504 6.66377 6.86887 7.05344 7.18639 7.29795 7.54241 7.58373 7.82957 7.93680 8.15551 8.46829 8.58378 8.76383 8.85081 10.11039 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.003758 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.979516 B = 7448.158661 C = 9894.513879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.137 4.137 11 C -0.120 4.120 12 C -0.108 4.108 13 Cl -0.133 7.133 14 C -0.160 4.160 15 C 0.118 3.882 16 N -0.741 5.741 17 C 0.226 3.774 18 C 0.253 3.747 19 N -0.465 5.465 20 C 0.021 3.979 21 C -0.060 4.060 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.092 4.092 25 C 0.008 3.992 26 O -0.206 6.206 27 H 0.281 0.719 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.402 0.598 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 -5.570 -8.162 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.092 0.908 9 C 0.075 3.925 10 C -0.158 4.158 11 C -0.140 4.140 12 C -0.136 4.136 13 Cl -0.105 7.105 14 C -0.183 4.183 15 C 0.019 3.981 16 N -0.379 5.379 17 C 0.100 3.900 18 C 0.041 3.959 19 N -0.195 5.195 20 C -0.091 4.091 21 C -0.079 4.079 22 C -0.143 4.143 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.042 4.042 26 O -0.097 6.097 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.238 0.762 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.237 -5.805 -7.554 14.732 hybrid contribution 0.167 1.046 -0.859 1.364 sum 11.404 -4.759 -8.413 14.949 Atomic orbital electron populations 1.69827 1.07420 1.29291 1.35015 1.25802 0.94713 1.01090 0.92423 0.86357 0.80800 0.80946 0.79045 1.19679 1.19909 1.18469 1.19194 0.97356 0.91175 1.41052 0.90788 1.17273 0.93278 0.90148 0.91772 1.20728 0.98569 0.96564 0.99907 1.20200 1.00415 0.91215 1.02178 1.19887 0.99697 0.84749 1.09219 1.98223 1.79894 1.39727 1.92649 1.19798 0.98481 0.95828 1.04241 1.17538 0.90673 0.93697 0.96171 1.43668 1.33146 1.05088 1.56042 1.19540 0.87110 0.89802 0.93573 1.26651 0.95548 0.94617 0.79100 1.70719 0.99867 1.19368 1.29546 1.19985 0.95608 1.04874 0.88617 1.20346 0.90781 0.98409 0.98376 1.21035 1.00408 1.01080 0.91732 1.21003 0.91773 0.99267 0.99434 1.19909 0.94940 1.02891 0.93333 1.20414 0.82071 1.04620 0.97138 1.84568 1.28167 1.72193 1.24779 0.90760 0.85594 0.88544 0.88107 0.76180 0.88487 0.89916 0.84622 0.84599 0.84302 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.46 10.99 55.55 0.61 -18.85 16 2 C 0.08 1.85 5.14 -17.32 -0.09 1.76 16 3 Si 0.90 18.07 29.59 -169.99 -5.03 13.04 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.27 8.49 -37.90 -0.32 -11.59 16 8 H 0.07 1.76 6.70 -52.49 -0.35 1.41 16 9 C 0.08 1.97 5.58 -106.62 -0.59 1.38 16 10 C -0.14 -3.36 8.63 -39.29 -0.34 -3.69 16 11 C -0.12 -2.72 9.74 -39.94 -0.39 -3.11 16 12 C -0.11 -2.34 6.33 -39.25 -0.25 -2.59 16 13 Cl -0.13 -2.52 28.94 -51.86 -1.50 -4.02 16 14 C -0.16 -3.37 9.07 -39.39 -0.36 -3.73 16 15 C 0.12 2.62 6.68 -83.30 -0.56 2.06 16 16 N -0.74 -14.35 5.62 -59.38 -0.33 -14.68 16 17 C 0.23 3.56 5.53 -5.19 -0.03 3.54 16 18 C 0.25 4.06 7.60 -13.09 -0.10 3.96 16 19 N -0.47 -7.73 11.34 -8.70 -0.10 -7.83 16 20 C 0.02 0.31 7.24 -84.71 -0.61 -0.30 16 21 C -0.06 -0.69 10.10 -39.28 -0.40 -1.09 16 22 C -0.12 -1.07 10.02 -39.60 -0.40 -1.47 16 23 C -0.10 -0.82 10.03 -39.52 -0.40 -1.21 16 24 C -0.09 -0.99 10.06 -39.54 -0.40 -1.39 16 25 C 0.01 0.12 7.43 -38.64 -0.29 -0.17 16 26 O -0.21 -3.28 10.77 3.59 0.04 -3.24 16 27 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 28 H 0.13 3.19 6.22 -52.49 -0.33 2.86 16 29 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 30 H 0.10 1.89 6.72 -52.49 -0.35 1.53 16 31 H 0.40 8.05 6.69 -40.82 -0.27 7.78 16 32 H 0.10 1.44 7.95 -51.93 -0.41 1.03 16 33 H 0.08 1.20 7.94 -51.93 -0.41 0.79 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -27.53 337.05 -10.12 -37.66 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.38 Total: 10.48 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -5.51 Total: -17.63 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.18 Total: -41.36 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -1.50 Total: -4.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.53 -10.12 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161973716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.450 kcal (2) G-P(sol) polarization free energy of solvation -27.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds